Wall clock time and date at job start Tue Mar 31 2020 22:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39437 * 119.53936 * 2 1 4 4 C 1.35989 * 121.08492 * 179.97438 * 3 2 1 5 5 C 1.40829 * 119.73821 * 359.97438 * 4 3 2 6 6 N 1.33270 * 120.99524 * 179.97438 * 5 4 3 7 7 C 1.31879 * 121.30023 * 180.02562 * 6 5 4 8 8 C 1.48271 * 119.24131 * 179.97438 * 7 6 5 9 9 O 1.21495 * 120.00320 * 174.55334 * 8 7 6 10 10 N 1.34784 * 119.99882 * 354.54321 * 8 7 6 11 11 C 1.46503 * 119.99515 * 5.06825 * 10 8 7 12 12 C 1.46499 * 120.00326 * 185.05642 * 10 8 7 13 13 C 1.52999 * 109.46622 * 83.18751 * 12 10 8 14 14 H 1.08998 * 112.96770 * 311.50251 * 13 12 10 15 15 C 1.53948 * 113.77036 * 179.82265 * 13 12 10 16 16 C 1.53941 * 86.29307 * 222.09449 * 15 13 12 17 17 N 1.47581 * 113.77060 * 83.33001 * 13 12 10 18 18 C 1.36938 * 134.48771 * 318.94053 * 17 13 12 19 19 H 1.07996 * 120.00708 * 2.84429 * 18 17 13 20 20 C 1.38820 * 119.99675 * 182.83840 * 18 17 13 21 21 N 1.31620 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47059 * 60.00345 * 22 20 18 24 24 H 1.48499 * 109.46950 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47163 * 300.00365 * 22 20 18 26 26 C 1.40281 * 121.52315 * 359.97438 * 7 6 5 27 27 C 1.36506 * 119.81329 * 0.02562 * 26 7 6 28 28 C 1.40759 * 118.24555 * 0.02562 * 27 26 7 29 29 C 1.36129 * 119.54388 * 179.72506 * 2 1 3 30 30 H 1.08994 * 109.46697 * 90.00464 * 1 2 3 31 31 H 1.09002 * 109.46910 * 209.99967 * 1 2 3 32 32 H 1.09000 * 109.47326 * 329.99844 * 1 2 3 33 33 H 1.07997 * 119.45693 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.13320 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.47703 * 58.45261 * 11 10 8 36 36 H 1.09001 * 109.46532 * 178.45594 * 11 10 8 37 37 H 1.09002 * 109.46768 * 298.44907 * 11 10 8 38 38 H 1.08996 * 109.47522 * 203.18845 * 12 10 8 39 39 H 1.09000 * 109.46855 * 323.19554 * 12 10 8 40 40 H 1.09004 * 113.73588 * 336.44306 * 15 13 12 41 41 H 1.08999 * 113.74042 * 107.63522 * 15 13 12 42 42 H 1.09001 * 113.77089 * 137.90346 * 16 15 13 43 43 H 1.08999 * 113.76662 * 269.19468 * 16 15 13 44 44 H 0.97006 * 119.99818 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.09605 * 180.02562 * 26 7 6 46 46 H 1.08002 * 120.88043 * 180.02562 * 27 26 7 47 47 H 1.08001 * 120.17470 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5539 1.2498 0.0005 5 6 4.2852 0.0463 0.0016 6 7 5.6179 0.0530 0.0016 7 6 6.3087 -1.0704 0.0022 8 6 7.7902 -1.0097 0.0016 9 8 8.4401 -2.0312 0.1019 10 7 8.4159 0.1789 -0.1105 11 6 7.6361 1.4191 -0.1199 12 6 9.8757 0.2306 -0.2226 13 6 10.2837 -0.0004 -1.6790 14 1 9.7929 -0.8649 -2.1262 15 6 11.8051 0.0381 -1.9107 16 6 11.4904 0.8484 -3.1812 17 7 10.2271 1.2160 -2.5127 18 6 9.3532 2.2647 -2.6220 19 1 8.4972 2.3249 -1.9663 20 6 9.5679 3.2504 -3.5756 21 7 10.6109 3.1768 -4.3749 22 14 8.3755 4.6806 -3.7252 23 1 8.3333 5.4262 -2.4417 24 1 8.8251 5.5883 -4.8110 25 1 7.0199 4.1638 -4.0421 26 6 5.6743 -2.3216 0.0032 27 6 4.3110 -2.3912 0.0033 28 6 3.5825 -1.1868 0.0016 29 6 2.1783 -1.1843 0.0057 30 1 -0.3632 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6383 2.1388 -0.0004 34 1 4.0707 2.1981 0.0009 35 1 7.0547 1.4898 0.7994 36 1 8.3111 2.2721 -0.1894 37 1 6.9623 1.4181 -0.9767 38 1 10.2308 1.2081 0.1036 39 1 10.3159 -0.5441 0.4053 40 1 12.3501 0.6025 -1.1540 41 1 12.2437 -0.9399 -2.1092 42 1 12.1630 1.6906 -3.3431 43 1 11.3557 0.2344 -4.0717 44 1 10.7607 3.8655 -5.0415 45 1 6.2627 -3.2271 0.0041 46 1 3.8047 -3.3452 0.0045 47 1 1.6337 -2.1169 0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085712697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:51 Heat of formation + Delta-G solvation = 76.590954 kcal Electronic energy + Delta-G solvation = -29330.685409 eV Core-core repulsion = 25480.238870 eV Total energy + Delta-G solvation = -3850.446538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16160 -40.85706 -39.52006 -38.22202 -36.56480 -34.59046 -34.24869 -33.12779 -31.28153 -30.35302 -29.69296 -28.39527 -27.32623 -25.34129 -25.23613 -24.72133 -23.51831 -23.02545 -21.06473 -20.76859 -19.04745 -18.81388 -18.37564 -17.87111 -17.17751 -16.86426 -16.70382 -16.49187 -15.85771 -15.63239 -15.37434 -15.25515 -15.03304 -14.82258 -14.72677 -14.30057 -14.13033 -14.04903 -13.92986 -13.57592 -13.26706 -13.09226 -12.99039 -12.91544 -12.69444 -12.49086 -12.45385 -12.34805 -12.26582 -12.20127 -11.80478 -11.63348 -11.48787 -11.36292 -11.18795 -10.80158 -10.32457 -9.83092 -9.57648 -9.19420 -8.85615 -7.84061 -5.15628 -0.84823 -0.35716 0.90788 1.35033 1.43665 1.47162 1.52333 1.90564 2.17714 2.49398 2.90459 3.05105 3.32894 3.43472 3.51193 3.60733 3.77231 3.82362 3.96245 3.99339 4.16084 4.23216 4.30862 4.32437 4.40840 4.42701 4.55558 4.66079 4.67552 4.76394 4.76554 4.88403 4.88859 4.90239 4.99504 5.00619 5.03474 5.05625 5.10382 5.22091 5.30909 5.35015 5.46481 5.50517 5.55789 5.63205 5.71863 5.86013 5.98564 6.29855 6.60452 6.98438 7.02223 7.68710 8.64862 9.34043 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.003655 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.181630 B = 7658.164290 C = 9601.284629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.103 4.103 5 C 0.088 3.912 6 N -0.448 5.448 7 C 0.090 3.910 8 C 0.557 3.443 9 O -0.565 6.565 10 N -0.585 5.585 11 C 0.112 3.888 12 C 0.124 3.876 13 C 0.129 3.871 14 H 0.026 0.974 15 C -0.129 4.129 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.224 4.224 19 H 0.102 0.898 20 C -0.073 4.073 21 N -0.959 5.959 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.299 1.299 25 H -0.283 1.283 26 C -0.138 4.138 27 C -0.051 4.051 28 C -0.094 4.094 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.007 0.993 44 H 0.244 0.756 45 H 0.152 0.848 46 H 0.185 0.815 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.267 -8.741 13.022 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.035 4.035 6 N -0.160 5.160 7 C -0.062 4.062 8 C 0.344 3.656 9 O -0.445 6.445 10 N -0.314 5.314 11 C -0.030 4.030 12 C 0.001 3.999 13 C 0.022 3.978 14 H 0.043 0.957 15 C -0.168 4.168 16 C 0.028 3.972 17 N -0.350 5.350 18 C -0.352 4.352 19 H 0.119 0.881 20 C -0.265 4.265 21 N -0.609 5.609 22 Si 0.793 3.207 23 H -0.193 1.193 24 H -0.225 1.225 25 H -0.210 1.210 26 C -0.159 4.159 27 C -0.077 4.077 28 C -0.096 4.096 29 C -0.125 4.125 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.169 0.831 46 H 0.202 0.798 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.646 -8.084 12.967 24.889 hybrid contribution -0.383 0.252 -0.988 1.089 sum -20.029 -7.832 11.979 24.617 Atomic orbital electron populations 1.20932 0.88189 1.04438 1.03569 1.20190 0.98326 0.92436 0.96472 1.21204 0.93174 0.99535 0.97569 1.21051 0.94683 0.96508 0.99890 1.19387 0.88899 0.94660 1.00583 1.68343 1.08130 1.29297 1.10236 1.21247 0.93447 0.90950 1.00565 1.18328 0.86866 0.83365 0.77005 1.90694 1.66823 1.34415 1.52547 1.47790 1.07923 1.06824 1.68840 1.21987 0.94658 0.84272 1.02088 1.21895 0.78482 1.03140 0.96399 1.22657 0.95103 0.88489 0.91541 0.95687 1.23573 0.94537 1.00247 0.98428 1.22076 0.87594 0.94722 0.92778 1.46565 1.25468 1.19672 1.43319 1.19821 1.04176 0.97435 1.13757 0.88061 1.25582 1.00215 1.02103 0.98597 1.70025 1.30754 1.35930 1.24150 0.85354 0.78416 0.79438 0.77531 1.19317 1.22516 1.20970 1.21798 0.96292 0.97827 0.99936 1.21835 0.92612 0.99173 0.94057 1.19254 0.96168 0.93598 1.00557 1.21183 0.90969 1.00014 1.00368 0.89937 0.89855 0.90077 0.82572 0.84471 0.90473 0.91339 0.92783 0.89233 0.89038 0.88851 0.90005 0.93776 0.97514 0.94710 0.83053 0.79796 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.98 71.24 0.71 -0.08 16 2 C -0.07 -1.02 5.85 -20.06 -0.12 -1.13 16 3 C -0.10 -1.53 9.58 22.04 0.21 -1.32 16 4 C -0.10 -2.31 9.99 22.38 0.22 -2.09 16 5 C 0.09 2.39 6.61 40.47 0.27 2.66 16 6 N -0.45 -14.33 5.89 -177.76 -1.05 -15.38 16 7 C 0.09 2.99 6.69 42.30 0.28 3.27 16 8 C 0.56 21.13 7.60 86.91 0.66 21.79 16 9 O -0.57 -23.16 15.96 -3.70 -0.06 -23.21 16 10 N -0.58 -22.08 2.89 -849.70 -2.46 -24.54 16 11 C 0.11 4.00 7.28 127.77 0.93 4.93 16 12 C 0.12 4.65 5.25 86.38 0.45 5.10 16 13 C 0.13 5.59 4.49 45.09 0.20 5.79 16 14 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 15 C -0.13 -4.98 7.86 31.25 0.25 -4.74 16 16 C 0.15 7.67 7.44 86.48 0.64 8.31 16 17 N -0.62 -32.56 3.57 -694.16 -2.48 -35.04 16 18 C -0.22 -12.41 10.35 84.04 0.87 -11.54 16 19 H 0.10 5.22 3.94 -2.91 -0.01 5.21 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.96 -59.32 11.45 21.65 0.25 -59.08 16 22 Si 0.96 46.17 29.55 68.60 2.03 48.19 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 C -0.14 -3.66 9.54 22.36 0.21 -3.45 16 27 C -0.05 -1.02 9.88 22.48 0.22 -0.80 16 28 C -0.09 -2.04 5.75 -21.22 -0.12 -2.16 16 29 C -0.11 -1.61 9.37 22.31 0.21 -1.40 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.37 8.07 -2.39 -0.02 0.35 16 32 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.08 2.44 7.12 -2.39 -0.02 2.42 16 36 H 0.07 2.53 6.40 -2.39 -0.02 2.51 16 37 H 0.05 2.11 6.60 -2.39 -0.02 2.09 16 38 H 0.09 3.30 7.77 -2.39 -0.02 3.28 16 39 H 0.09 3.16 7.57 -2.39 -0.02 3.14 16 40 H 0.09 3.28 8.10 -2.38 -0.02 3.26 16 41 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.04 2.41 7.29 -2.39 -0.02 2.39 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.24 14.81 8.31 -92.70 -0.77 14.04 16 45 H 0.15 3.79 7.61 -2.91 -0.02 3.77 16 46 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -75.72 381.29 3.79 -71.92 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.98 Total: 17.73 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.57 Total: 19.41 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -5.74 Total: -134.04 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -75.72 3.79 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085712697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.514 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds