Wall clock time and date at job start Tue Mar 31 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39442 * 119.53963 * 2 1 4 4 C 1.35998 * 121.08319 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73141 * 0.02818 * 4 3 2 6 6 N 1.33270 * 120.97451 * 180.26851 * 5 4 3 7 7 C 1.31883 * 121.29689 * 180.27178 * 6 5 4 8 8 C 1.48280 * 119.23914 * 179.71852 * 7 6 5 9 9 O 1.21503 * 119.99363 * 185.34645 * 8 7 6 10 10 N 1.34766 * 120.00438 * 5.34312 * 8 7 6 11 11 C 1.46504 * 119.99980 * 4.92240 * 10 8 7 12 12 C 1.46498 * 120.00356 * 184.93031 * 10 8 7 13 13 C 1.53003 * 109.46624 * 274.27600 * 12 10 8 14 14 H 1.09001 * 112.73846 * 316.42148 * 13 12 10 15 15 C 1.53493 * 113.52221 * 87.21851 * 13 12 10 16 16 C 1.53238 * 83.43166 * 140.68439 * 15 13 12 17 17 N 1.47060 * 88.08196 * 334.10255 * 16 15 13 18 18 C 1.36935 * 136.05599 * 207.19998 * 17 16 15 19 19 H 1.08004 * 119.99738 * 174.43088 * 18 17 16 20 20 C 1.38805 * 120.00221 * 354.15147 * 18 17 16 21 21 N 1.31624 * 120.00053 * 0.28014 * 20 18 17 22 22 Si 1.86805 * 120.00272 * 180.27442 * 20 18 17 23 23 H 1.48496 * 109.47152 * 90.00173 * 22 20 18 24 24 H 1.48498 * 109.47042 * 210.00383 * 22 20 18 25 25 H 1.48499 * 109.46938 * 330.00050 * 22 20 18 26 26 C 1.40278 * 121.51580 * 359.44006 * 7 6 5 27 27 C 1.36503 * 119.82018 * 0.28238 * 26 7 6 28 28 C 1.40752 * 118.24436 * 359.97438 * 27 26 7 29 29 C 1.36128 * 119.54616 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47510 * 89.99867 * 1 2 3 31 31 H 1.09001 * 109.47290 * 210.00048 * 1 2 3 32 32 H 1.09004 * 109.47378 * 329.99704 * 1 2 3 33 33 H 1.08002 * 119.45903 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.13160 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47516 * 174.77017 * 11 10 8 36 36 H 1.08997 * 109.47428 * 294.77562 * 11 10 8 37 37 H 1.09005 * 109.47086 * 54.77211 * 11 10 8 38 38 H 1.09001 * 109.47728 * 154.28048 * 12 10 8 39 39 H 1.08994 * 109.47168 * 34.26966 * 12 10 8 40 40 H 1.08997 * 114.20896 * 254.44421 * 15 13 12 41 41 H 1.09003 * 114.20775 * 27.06801 * 15 13 12 42 42 H 1.09004 * 113.38389 * 219.29064 * 16 15 13 43 43 H 1.09002 * 113.47021 * 88.93149 * 16 15 13 44 44 H 0.96997 * 120.00185 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.08779 * 180.25302 * 26 7 6 46 46 H 1.08002 * 120.88052 * 180.02562 * 27 26 7 47 47 H 1.08005 * 120.17249 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.2132 0.0000 4 6 3.5539 1.2498 0.0005 5 6 4.2850 0.0462 0.0005 6 7 5.6176 0.0532 0.0063 7 6 6.3087 -1.0701 0.0010 8 6 7.7902 -1.0091 0.0015 9 8 8.4402 -2.0304 -0.1014 10 7 8.4157 0.1791 0.1161 11 6 7.6364 1.3978 0.3482 12 6 9.8749 0.2522 0.0084 13 6 10.5017 -0.0261 1.3761 14 1 9.9875 0.4885 2.1878 15 6 10.7370 -1.5179 1.6499 16 6 12.0376 -1.0157 2.2859 17 7 11.9610 0.1551 1.3993 18 6 12.8554 1.0267 0.8376 19 1 12.5148 1.7693 0.1312 20 6 14.1987 0.9597 1.1806 21 7 14.6138 0.0547 2.0415 22 14 15.4176 2.1538 0.4203 23 1 15.5171 3.3676 1.2699 24 1 16.7506 1.5063 0.3241 25 1 14.9542 2.5365 -0.9376 26 6 5.6743 -2.3213 0.0006 27 6 4.3111 -2.3912 0.0000 28 6 3.5824 -1.1870 0.0003 29 6 2.1782 -1.1843 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6381 2.1389 0.0004 34 1 4.0707 2.1981 0.0001 35 1 8.3133 2.2376 0.5051 36 1 7.0057 1.5964 -0.5183 37 1 7.0102 1.2661 1.2307 38 1 10.1650 1.2475 -0.3285 39 1 10.2239 -0.4903 -0.7091 40 1 10.0333 -1.9592 2.3557 41 1 10.8817 -2.1197 0.7527 42 1 12.8945 -1.6583 2.0833 43 1 11.9366 -0.7675 3.3424 44 1 15.5525 0.0081 2.2815 45 1 6.2630 -3.2268 0.0003 46 1 3.8049 -3.3453 0.0001 47 1 1.6336 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085712698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:55 Heat of formation + Delta-G solvation = 96.752837 kcal Electronic energy + Delta-G solvation = -28608.541562 eV Core-core repulsion = 24758.969309 eV Total energy + Delta-G solvation = -3849.572254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30956 -39.65713 -38.01833 -37.29132 -35.31707 -33.80288 -32.48815 -32.08029 -30.56325 -28.81915 -27.80563 -27.53865 -26.13811 -24.48402 -23.61305 -23.25677 -22.46646 -22.00446 -19.79135 -19.03732 -18.25617 -17.40158 -17.08576 -16.65514 -15.81630 -15.71898 -15.50993 -14.82162 -14.68041 -14.58846 -14.40934 -13.97877 -13.93294 -13.77361 -13.49158 -13.34776 -13.26824 -12.78676 -12.68630 -12.53737 -12.14944 -11.91417 -11.84497 -11.61928 -11.56238 -11.35999 -11.00431 -10.88622 -10.79468 -10.67592 -10.36298 -10.13788 -9.75577 -9.68910 -9.41207 -9.30074 -9.00673 -8.72058 -8.53088 -8.17012 -6.78557 -5.70043 -3.01811 -0.06732 0.40166 1.63933 2.25035 3.10517 3.16278 3.42820 3.47099 3.49609 3.82324 3.89699 4.20548 4.34157 4.38830 4.50311 4.57729 4.66250 4.76017 4.92885 5.10218 5.11969 5.14784 5.28761 5.40648 5.43306 5.49455 5.54574 5.61728 5.67887 5.72315 5.77521 5.80050 5.94451 6.00878 6.07235 6.09585 6.12979 6.15745 6.21887 6.47804 6.50160 6.67558 6.76643 6.90426 6.92819 7.34077 7.43570 7.57157 7.65053 7.67271 8.05407 8.32803 9.10259 9.77271 10.74356 11.48101 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.002247 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.394941 B =12458.588227 C =13154.858615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.080 4.080 5 C 0.115 3.885 6 N -0.435 5.435 7 C 0.123 3.877 8 C 0.559 3.441 9 O -0.520 6.520 10 N -0.589 5.589 11 C 0.098 3.902 12 C 0.116 3.884 13 C 0.130 3.870 14 H 0.040 0.960 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.602 5.602 18 C -0.217 4.217 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.121 4.121 27 C -0.067 4.067 28 C -0.085 4.085 29 C -0.105 4.105 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.253 0.747 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.743 -1.014 -4.268 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.124 4.124 4 C -0.099 4.099 5 C -0.008 4.008 6 N -0.147 5.147 7 C -0.031 4.031 8 C 0.344 3.656 9 O -0.395 6.395 10 N -0.320 5.320 11 C -0.045 4.045 12 C -0.007 4.007 13 C 0.022 3.978 14 H 0.057 0.943 15 C -0.189 4.189 16 C 0.029 3.971 17 N -0.328 5.328 18 C -0.344 4.344 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.141 4.141 27 C -0.093 4.093 28 C -0.087 4.087 29 C -0.123 4.123 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.624 -0.528 -4.380 29.951 hybrid contribution 0.243 0.096 -0.156 0.304 sum -29.381 -0.432 -4.535 29.732 Atomic orbital electron populations 1.20859 0.90745 1.03140 1.02633 1.19749 0.96533 0.93011 0.98495 1.20825 0.94006 0.97831 0.99785 1.20868 0.93524 0.96920 0.98546 1.18981 0.89355 0.92901 0.99597 1.68445 1.06767 1.29260 1.10242 1.21524 0.94781 0.89458 0.97323 1.17885 0.85392 0.84024 0.78298 1.90805 1.65552 1.33434 1.49757 1.47792 1.08045 1.07173 1.69005 1.21941 0.95018 0.85589 1.01964 1.22015 0.76054 1.02767 0.99883 1.22449 0.87240 0.94406 0.93716 0.94267 1.23555 0.98826 0.95575 1.00953 1.21939 0.94589 0.88125 0.92446 1.45640 0.99137 1.33473 1.54517 1.18880 0.87200 1.09812 1.18502 0.90276 1.24818 0.97011 0.99355 0.99335 1.69858 1.14745 1.35743 1.36137 0.86146 0.80907 0.80332 0.78547 1.21690 1.21680 1.20614 1.21783 0.95050 0.99040 0.98246 1.21437 0.93715 0.97758 0.96404 1.18953 0.94761 0.94092 1.00864 1.20838 0.92179 0.98300 1.01006 0.90832 0.91303 0.91208 0.85177 0.84329 0.91694 0.91139 0.91938 0.90439 0.89811 0.93307 0.89929 0.91801 0.95918 0.93713 0.83087 0.83814 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 9.98 36.00 0.36 -0.11 16 2 C -0.08 -0.52 5.85 -104.94 -0.61 -1.13 16 3 C -0.10 -0.72 9.58 -39.94 -0.38 -1.11 16 4 C -0.08 -0.70 9.99 -39.41 -0.39 -1.09 16 5 C 0.11 1.27 6.61 -84.85 -0.56 0.71 16 6 N -0.44 -5.53 5.97 -7.54 -0.04 -5.58 16 7 C 0.12 1.70 6.65 -82.95 -0.55 1.15 16 8 C 0.56 9.28 7.62 -12.14 -0.09 9.19 16 9 O -0.52 -9.92 14.43 5.36 0.08 -9.84 16 10 N -0.59 -9.60 2.88 -182.53 -0.53 -10.13 16 11 C 0.10 1.29 8.97 59.85 0.54 1.83 16 12 C 0.12 2.21 5.32 -4.04 -0.02 2.19 16 13 C 0.13 2.84 4.29 -72.39 -0.31 2.53 16 14 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.15 -3.27 6.77 -26.35 -0.18 -3.45 16 16 C 0.15 3.93 7.26 -8.64 -0.06 3.87 16 17 N -0.60 -16.01 3.65 -177.17 -0.65 -16.66 16 18 C -0.22 -6.15 10.55 -15.06 -0.16 -6.31 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.13 11.66 55.49 0.65 -27.48 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.12 -1.40 9.54 -39.44 -0.38 -1.78 16 27 C -0.07 -0.62 9.88 -39.26 -0.39 -1.01 16 28 C -0.08 -0.83 5.75 -106.72 -0.61 -1.44 16 29 C -0.10 -0.78 9.37 -39.52 -0.37 -1.15 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 32 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.06 0.82 7.78 -51.93 -0.40 0.41 16 36 H 0.07 0.86 6.93 -51.93 -0.36 0.50 16 37 H 0.06 0.80 7.21 -51.93 -0.37 0.43 16 38 H 0.08 1.45 7.88 -51.93 -0.41 1.04 16 39 H 0.08 1.73 7.35 -51.93 -0.38 1.35 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.86 7.63 -51.93 -0.40 1.46 16 42 H 0.06 1.77 7.39 -51.93 -0.38 1.38 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -34.11 385.81 -10.85 -44.97 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.88 Total: -1.12 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -4.27 Total: 2.53 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.57 Total: -59.84 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.11 -10.85 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085712698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.718 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds