Wall clock time and date at job start Tue Mar 31 2020 22:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39442 * 119.53963 * 2 1 4 4 C 1.35998 * 121.08319 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73141 * 0.02818 * 4 3 2 6 6 N 1.33270 * 120.97451 * 180.26851 * 5 4 3 7 7 C 1.31883 * 121.29689 * 180.27178 * 6 5 4 8 8 C 1.48280 * 119.23914 * 179.71852 * 7 6 5 9 9 O 1.21503 * 119.99363 * 185.34645 * 8 7 6 10 10 N 1.34766 * 120.00438 * 5.34312 * 8 7 6 11 11 C 1.46504 * 119.99980 * 4.92240 * 10 8 7 12 12 C 1.46498 * 120.00356 * 184.93031 * 10 8 7 13 13 C 1.53003 * 109.46624 * 274.27600 * 12 10 8 14 14 H 1.09001 * 112.73846 * 316.42148 * 13 12 10 15 15 C 1.53493 * 113.52221 * 87.21851 * 13 12 10 16 16 C 1.53238 * 83.43166 * 140.68439 * 15 13 12 17 17 N 1.47060 * 88.08196 * 334.10255 * 16 15 13 18 18 C 1.36935 * 136.05599 * 207.19998 * 17 16 15 19 19 H 1.08004 * 119.99738 * 174.43088 * 18 17 16 20 20 C 1.38805 * 120.00221 * 354.15147 * 18 17 16 21 21 N 1.31624 * 120.00053 * 0.28014 * 20 18 17 22 22 Si 1.86805 * 120.00272 * 180.27442 * 20 18 17 23 23 H 1.48496 * 109.47152 * 90.00173 * 22 20 18 24 24 H 1.48498 * 109.47042 * 210.00383 * 22 20 18 25 25 H 1.48499 * 109.46938 * 330.00050 * 22 20 18 26 26 C 1.40278 * 121.51580 * 359.44006 * 7 6 5 27 27 C 1.36503 * 119.82018 * 0.28238 * 26 7 6 28 28 C 1.40752 * 118.24436 * 359.97438 * 27 26 7 29 29 C 1.36128 * 119.54616 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47510 * 89.99867 * 1 2 3 31 31 H 1.09001 * 109.47290 * 210.00048 * 1 2 3 32 32 H 1.09004 * 109.47378 * 329.99704 * 1 2 3 33 33 H 1.08002 * 119.45903 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.13160 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47516 * 174.77017 * 11 10 8 36 36 H 1.08997 * 109.47428 * 294.77562 * 11 10 8 37 37 H 1.09005 * 109.47086 * 54.77211 * 11 10 8 38 38 H 1.09001 * 109.47728 * 154.28048 * 12 10 8 39 39 H 1.08994 * 109.47168 * 34.26966 * 12 10 8 40 40 H 1.08997 * 114.20896 * 254.44421 * 15 13 12 41 41 H 1.09003 * 114.20775 * 27.06801 * 15 13 12 42 42 H 1.09004 * 113.38389 * 219.29064 * 16 15 13 43 43 H 1.09002 * 113.47021 * 88.93149 * 16 15 13 44 44 H 0.96997 * 120.00185 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.08779 * 180.25302 * 26 7 6 46 46 H 1.08002 * 120.88052 * 180.02562 * 27 26 7 47 47 H 1.08005 * 120.17249 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.2132 0.0000 4 6 3.5539 1.2498 0.0005 5 6 4.2850 0.0462 0.0005 6 7 5.6176 0.0532 0.0063 7 6 6.3087 -1.0701 0.0010 8 6 7.7902 -1.0091 0.0015 9 8 8.4402 -2.0304 -0.1014 10 7 8.4157 0.1791 0.1161 11 6 7.6364 1.3978 0.3482 12 6 9.8749 0.2522 0.0084 13 6 10.5017 -0.0261 1.3761 14 1 9.9875 0.4885 2.1878 15 6 10.7370 -1.5179 1.6499 16 6 12.0376 -1.0157 2.2859 17 7 11.9610 0.1551 1.3993 18 6 12.8554 1.0267 0.8376 19 1 12.5148 1.7693 0.1312 20 6 14.1987 0.9597 1.1806 21 7 14.6138 0.0547 2.0415 22 14 15.4176 2.1538 0.4203 23 1 15.5171 3.3676 1.2699 24 1 16.7506 1.5063 0.3241 25 1 14.9542 2.5365 -0.9376 26 6 5.6743 -2.3213 0.0006 27 6 4.3111 -2.3912 0.0000 28 6 3.5824 -1.1870 0.0003 29 6 2.1782 -1.1843 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6381 2.1389 0.0004 34 1 4.0707 2.1981 0.0001 35 1 8.3133 2.2376 0.5051 36 1 7.0057 1.5964 -0.5183 37 1 7.0102 1.2661 1.2307 38 1 10.1650 1.2475 -0.3285 39 1 10.2239 -0.4903 -0.7091 40 1 10.0333 -1.9592 2.3557 41 1 10.8817 -2.1197 0.7527 42 1 12.8945 -1.6583 2.0833 43 1 11.9366 -0.7675 3.3424 44 1 15.5525 0.0081 2.2815 45 1 6.2630 -3.2268 0.0003 46 1 3.8049 -3.3453 0.0001 47 1 1.6336 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085712698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:54 Heat of formation + Delta-G solvation = 77.723166 kcal Electronic energy + Delta-G solvation = -28609.366751 eV Core-core repulsion = 24758.969309 eV Total energy + Delta-G solvation = -3850.397442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13702 -40.90295 -39.65354 -38.18430 -36.64059 -34.57801 -34.26428 -33.10049 -31.24045 -30.19488 -29.90157 -28.39019 -27.24211 -25.46112 -25.20638 -24.62061 -23.49210 -22.99010 -21.14477 -20.81009 -18.99538 -18.75573 -18.41105 -17.83969 -17.25219 -16.99757 -16.51113 -16.42948 -15.83636 -15.64119 -15.33379 -15.25909 -15.03429 -14.97321 -14.44376 -14.12356 -14.09211 -13.99705 -13.87868 -13.79639 -13.44177 -13.27487 -13.00150 -12.94619 -12.61927 -12.58120 -12.41972 -12.30144 -12.23066 -12.15201 -11.84069 -11.65688 -11.60322 -11.30872 -11.15176 -10.85792 -10.35989 -9.78758 -9.56749 -9.15811 -8.91927 -7.89964 -5.24041 -0.82450 -0.32516 0.93893 1.39746 1.45221 1.48429 1.56739 1.86363 2.19994 2.48187 2.91236 3.08290 3.30385 3.41800 3.57549 3.65209 3.79704 3.85046 3.88460 4.02433 4.18573 4.21742 4.32446 4.35425 4.37359 4.41421 4.45486 4.66467 4.68887 4.78971 4.83789 4.86119 4.90635 4.93327 5.02125 5.03998 5.05323 5.07765 5.12155 5.20811 5.25628 5.34369 5.45434 5.49631 5.51875 5.59615 5.70992 5.88658 5.91290 6.31462 6.62215 6.89681 7.07011 7.59946 8.61863 9.28979 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.002247 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.394941 B =12458.588227 C =13154.858615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.096 4.096 4 C -0.097 4.097 5 C 0.090 3.910 6 N -0.442 5.442 7 C 0.097 3.903 8 C 0.556 3.444 9 O -0.555 6.555 10 N -0.591 5.591 11 C 0.103 3.897 12 C 0.131 3.869 13 C 0.136 3.864 14 H 0.046 0.954 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.627 5.627 18 C -0.223 4.223 19 H 0.092 0.908 20 C -0.073 4.073 21 N -0.957 5.957 22 Si 0.983 3.017 23 H -0.285 1.285 24 H -0.297 1.297 25 H -0.264 1.264 26 C -0.139 4.139 27 C -0.053 4.053 28 C -0.094 4.094 29 C -0.110 4.110 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.017 0.983 44 H 0.248 0.752 45 H 0.148 0.852 46 H 0.180 0.820 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.764 0.148 -5.026 35.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.115 4.115 4 C -0.115 4.115 5 C -0.033 4.033 6 N -0.154 5.154 7 C -0.056 4.056 8 C 0.343 3.657 9 O -0.432 6.432 10 N -0.322 5.322 11 C -0.038 4.038 12 C 0.007 3.993 13 C 0.029 3.971 14 H 0.063 0.937 15 C -0.163 4.163 16 C 0.026 3.974 17 N -0.354 5.354 18 C -0.351 4.351 19 H 0.109 0.891 20 C -0.266 4.266 21 N -0.606 5.606 22 Si 0.810 3.190 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.189 1.189 26 C -0.160 4.160 27 C -0.078 4.078 28 C -0.096 4.096 29 C -0.128 4.128 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.176 0.824 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.166 0.834 46 H 0.197 0.803 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -33.703 0.657 -5.150 34.100 hybrid contribution 1.198 -0.236 0.093 1.224 sum -32.505 0.421 -5.057 32.899 Atomic orbital electron populations 1.20935 0.88483 1.04294 1.03587 1.20176 0.98182 0.92593 0.96420 1.21219 0.93414 0.99311 0.97579 1.21056 0.94409 0.96519 0.99551 1.19376 0.88897 0.94515 1.00548 1.68292 1.07897 1.28925 1.10324 1.21124 0.93051 0.90857 1.00537 1.18383 0.86815 0.83391 0.77138 1.90768 1.66721 1.34497 1.51255 1.47818 1.06872 1.08376 1.69169 1.22026 0.94847 0.84376 1.02591 1.21586 0.77970 1.02298 0.97437 1.22489 0.85093 0.94078 0.95417 0.93687 1.23288 0.96929 0.95740 1.00378 1.21893 0.95161 0.88020 0.92310 1.45955 1.01293 1.33512 1.54593 1.19346 0.87827 1.09667 1.18281 0.89073 1.25745 0.99044 1.01389 1.00394 1.70061 1.14647 1.37788 1.38080 0.85016 0.77797 0.77813 0.78350 1.21192 1.22333 1.18867 1.21790 0.96224 0.98047 0.99897 1.21801 0.92659 0.99212 0.94138 1.19244 0.96063 0.93739 1.00577 1.21155 0.91118 0.99956 1.00601 0.89796 0.90256 0.90083 0.82439 0.83637 0.91043 0.90093 0.91597 0.89875 0.91724 0.91310 0.90844 0.94907 0.96557 0.94356 0.83443 0.80317 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 9.98 71.23 0.71 0.29 16 2 C -0.07 -0.70 5.85 -20.07 -0.12 -0.82 16 3 C -0.10 -1.01 9.58 22.04 0.21 -0.79 16 4 C -0.10 -1.51 9.99 22.38 0.22 -1.28 16 5 C 0.09 1.89 6.61 40.47 0.27 2.16 16 6 N -0.44 -11.09 5.97 -177.76 -1.06 -12.15 16 7 C 0.10 2.70 6.65 42.31 0.28 2.99 16 8 C 0.56 18.91 7.62 86.92 0.66 19.57 16 9 O -0.55 -21.94 14.43 -3.72 -0.05 -22.00 16 10 N -0.59 -19.43 2.88 -849.70 -2.45 -21.88 16 11 C 0.10 2.67 8.97 127.77 1.15 3.81 16 12 C 0.13 5.06 5.32 86.38 0.46 5.52 16 13 C 0.14 6.03 4.29 41.79 0.18 6.21 16 14 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 15 C -0.13 -5.57 6.77 30.84 0.21 -5.36 16 16 C 0.15 8.04 7.26 83.09 0.60 8.64 16 17 N -0.63 -34.15 3.65 -714.44 -2.61 -36.76 16 18 C -0.22 -12.84 10.55 84.03 0.89 -11.96 16 19 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 20 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 21 N -0.96 -60.53 11.66 21.65 0.25 -60.28 16 22 Si 0.98 46.95 29.55 68.60 2.03 48.97 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 26 C -0.14 -3.21 9.54 22.36 0.21 -3.00 16 27 C -0.05 -0.87 9.88 22.48 0.22 -0.65 16 28 C -0.09 -1.65 5.75 -21.22 -0.12 -1.77 16 29 C -0.11 -1.26 9.37 22.31 0.21 -1.05 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.17 8.07 -2.39 -0.02 0.15 16 32 H 0.08 0.16 8.08 -2.38 -0.02 0.14 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.07 1.72 7.78 -2.39 -0.02 1.71 16 36 H 0.08 1.92 6.93 -2.39 -0.02 1.91 16 37 H 0.07 1.66 7.21 -2.38 -0.02 1.65 16 38 H 0.08 3.10 7.88 -2.39 -0.02 3.08 16 39 H 0.06 2.75 7.35 -2.39 -0.02 2.73 16 40 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.07 3.42 7.63 -2.39 -0.02 3.40 16 42 H 0.03 1.91 7.39 -2.38 -0.02 1.89 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.15 3.38 7.61 -2.91 -0.02 3.36 16 46 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 47 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -76.45 385.81 3.79 -72.66 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.97 Total: 12.77 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.71 Total: 18.66 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.86 Total: -131.06 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.45 3.79 -72.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085712698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.382 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds