Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36539 * 120.09000 * 2 1 4 4 C 1.40722 * 118.24145 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.27571 * 180.02562 * 4 3 2 6 6 C 1.36130 * 119.64719 * 179.97438 * 5 4 3 7 7 C 1.39437 * 120.91920 * 0.27284 * 6 5 4 8 8 C 1.35990 * 121.08964 * 359.45974 * 7 6 5 9 9 C 1.40838 * 119.73471 * 0.50806 * 8 7 6 10 10 N 1.33246 * 120.99713 * 179.74956 * 9 8 7 11 11 C 1.31907 * 121.30132 * 179.97438 * 10 9 8 12 12 C 1.48269 * 119.23875 * 180.02562 * 11 10 9 13 13 O 1.21497 * 119.99887 * 255.05099 * 12 11 10 14 14 N 1.34775 * 120.00056 * 75.05602 * 12 11 10 15 15 C 1.46503 * 120.00234 * 5.08861 * 14 12 11 16 16 C 1.46505 * 119.99918 * 185.09303 * 14 12 11 17 17 C 1.53008 * 109.47135 * 97.10015 * 16 14 12 18 18 H 1.09002 * 112.96170 * 48.42870 * 17 16 14 19 19 C 1.53944 * 113.76769 * 180.10978 * 17 16 14 20 20 C 1.53945 * 86.28999 * 137.90590 * 19 17 16 21 21 N 1.47583 * 113.76548 * 276.60472 * 17 16 14 22 22 C 1.36936 * 134.49600 * 41.05733 * 21 17 16 23 23 H 1.07994 * 120.00125 * 238.12203 * 22 21 17 24 24 C 1.38811 * 119.99558 * 58.12249 * 22 21 17 25 25 N 1.31624 * 119.99814 * 198.60761 * 24 22 21 26 26 Si 1.86790 * 120.00415 * 18.60513 * 24 22 21 27 27 H 1.48507 * 109.47400 * 91.66479 * 26 24 22 28 28 H 1.48507 * 109.47397 * 211.66166 * 26 24 22 29 29 H 1.48497 * 109.47356 * 331.66475 * 26 24 22 30 30 H 1.09000 * 109.47089 * 86.05247 * 1 2 3 31 31 H 1.08995 * 109.47038 * 206.05227 * 1 2 3 32 32 H 1.08994 * 109.47088 * 326.05139 * 1 2 3 33 33 H 1.08001 * 120.88217 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.17408 * 359.95748 * 5 4 3 35 35 H 1.07996 * 119.53778 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.45600 * 179.70053 * 7 6 5 37 37 H 1.08001 * 120.13481 * 180.28057 * 8 7 6 38 38 H 1.08993 * 109.47066 * 93.45882 * 15 14 12 39 39 H 1.08997 * 109.47302 * 213.46165 * 15 14 12 40 40 H 1.08999 * 109.46885 * 333.45995 * 15 14 12 41 41 H 1.08996 * 109.46818 * 217.09641 * 16 14 12 42 42 H 1.08996 * 109.46884 * 337.09989 * 16 14 12 43 43 H 1.08996 * 113.74069 * 252.25268 * 19 17 16 44 44 H 1.09003 * 113.74267 * 23.45177 * 19 17 16 45 45 H 1.09000 * 113.77028 * 90.69037 * 20 19 17 46 46 H 1.08996 * 113.77099 * 221.97891 * 20 19 17 47 47 H 0.96998 * 120.00355 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3654 2.3120 -0.0001 6 6 5.7242 2.2295 -0.0001 7 6 6.3668 0.9920 -0.0063 8 6 5.6570 -0.1679 -0.0015 9 6 4.2492 -0.1253 -0.0010 10 7 3.5288 -1.2462 -0.0013 11 6 2.2101 -1.2134 -0.0003 12 6 1.4539 -2.4887 -0.0002 13 8 0.9098 -2.8724 -1.0165 14 7 1.3700 -3.2223 1.1273 15 6 1.9297 -2.7076 2.3795 16 6 0.7191 -4.5346 1.1006 17 6 1.7804 -5.6275 0.9580 18 1 2.6086 -5.5097 1.6568 19 6 1.2011 -7.0532 0.9167 20 6 2.2159 -7.3253 -0.2085 21 7 2.2039 -5.8670 -0.4353 22 6 2.4762 -5.0604 -1.5078 23 1 1.9250 -5.1817 -2.4285 24 6 3.4609 -4.0867 -1.4115 25 7 3.4855 -3.0885 -2.2691 26 14 4.7508 -4.1928 -0.0647 27 1 5.9335 -4.9357 -0.5694 28 1 5.1611 -2.8232 0.3369 29 1 4.1837 -4.9038 1.1091 30 1 -0.3633 0.0707 -1.0252 31 1 -0.3633 -0.9232 0.4513 32 1 -0.3633 0.8524 0.5739 33 1 1.6675 2.1257 0.0004 34 1 3.8801 3.2768 0.0001 35 1 6.3126 3.1351 -0.0001 36 1 7.4462 0.9541 -0.0111 37 1 6.1706 -1.1179 -0.0019 38 1 1.1511 -2.1899 2.9397 39 1 2.3144 -3.5366 2.9734 40 1 2.7399 -2.0133 2.1570 41 1 0.1656 -4.6844 2.0276 42 1 0.0324 -4.5824 0.2555 43 1 1.3867 -7.6286 1.8236 44 1 0.1614 -7.0953 0.5921 45 1 3.1733 -7.7068 0.1461 46 1 1.8081 -7.9040 -1.0373 47 1 4.1733 -2.4079 -2.2016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085730838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = 106.421028 kcal Electronic energy + Delta-G solvation = -31467.547530 eV Core-core repulsion = 27618.394521 eV Total energy + Delta-G solvation = -3849.153009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75985 -39.06245 -37.70290 -36.53908 -34.57620 -33.84933 -31.97388 -31.54459 -30.15380 -28.57205 -27.90069 -26.90690 -26.06792 -24.60470 -22.74084 -22.45571 -22.18376 -21.87836 -19.44828 -19.11713 -17.65633 -17.16810 -16.52917 -16.29438 -15.76303 -15.17139 -14.89349 -14.80470 -14.34563 -14.19682 -14.09383 -13.45480 -13.40121 -13.12329 -12.93467 -12.92227 -12.82278 -12.55399 -12.23989 -12.07678 -12.02260 -11.86500 -11.61270 -11.42638 -11.29176 -11.22834 -11.19889 -10.77182 -10.58424 -10.15256 -10.10602 -9.89813 -9.80294 -9.37164 -9.01407 -8.56196 -8.32631 -8.08193 -7.99503 -7.73945 -6.14149 -5.66955 -3.32552 0.60179 0.99168 2.23022 3.01292 3.43485 3.60286 3.70720 3.79015 3.82297 4.31798 4.65016 4.75387 4.84072 4.88380 4.93258 5.06166 5.08658 5.20234 5.26024 5.39359 5.47073 5.54877 5.55951 5.65580 5.69200 5.71347 5.77543 5.91531 5.94011 6.00353 6.01905 6.04814 6.19694 6.20412 6.23898 6.30474 6.36024 6.40958 6.52799 6.55078 6.61143 6.73118 6.76518 6.83004 7.02478 7.23042 7.37256 8.11349 8.20700 8.29345 8.62519 9.11887 9.16111 9.96615 10.80544 11.45142 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.005341 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.797179 B = 5241.096654 C = 6128.589293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.072 4.072 4 C -0.097 4.097 5 C -0.102 4.102 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.080 4.080 9 C 0.127 3.873 10 N -0.411 5.411 11 C 0.162 3.838 12 C 0.575 3.425 13 O -0.447 6.447 14 N -0.612 5.612 15 C 0.083 3.917 16 C 0.128 3.872 17 C 0.107 3.893 18 H 0.051 0.949 19 C -0.146 4.146 20 C 0.096 3.904 21 N -0.597 5.597 22 C -0.244 4.244 23 H 0.065 0.935 24 C 0.072 3.928 25 N -0.864 5.864 26 Si 0.860 3.140 27 H -0.311 1.311 28 H -0.257 1.257 29 H -0.271 1.271 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.045 0.955 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 10.333 11.090 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.098 4.098 4 C -0.099 4.099 5 C -0.121 4.121 6 C -0.136 4.136 7 C -0.136 4.136 8 C -0.099 4.099 9 C 0.004 3.996 10 N -0.121 5.121 11 C 0.006 3.994 12 C 0.358 3.642 13 O -0.313 6.313 14 N -0.348 5.348 15 C -0.061 4.061 16 C 0.005 3.995 17 C 0.001 3.999 18 H 0.068 0.932 19 C -0.185 4.185 20 C -0.028 4.028 21 N -0.325 5.325 22 C -0.372 4.372 23 H 0.082 0.918 24 C -0.134 4.134 25 N -0.501 5.501 26 Si 0.689 3.311 27 H -0.240 1.240 28 H -0.182 1.182 29 H -0.197 1.197 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.063 0.937 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.468 9.663 10.203 14.129 hybrid contribution 0.938 0.752 0.658 1.371 sum -0.530 10.415 10.861 15.057 Atomic orbital electron populations 1.20755 0.89961 1.02723 1.03173 1.20517 0.97670 0.92883 1.00310 1.21125 0.92471 0.97910 0.98302 1.18889 0.94122 0.94517 1.02376 1.20882 0.94016 0.96802 1.00367 1.20844 0.94617 0.97668 1.00502 1.20826 1.00093 0.92090 1.00549 1.21060 0.91682 0.99308 0.97825 1.18978 0.94252 0.87862 0.98546 1.68335 1.05893 1.28669 1.09162 1.21423 0.90142 0.93763 0.94049 1.17483 0.81058 0.82205 0.83417 1.90873 1.42915 1.67444 1.30113 1.47462 1.60042 1.18940 1.08397 1.21627 0.98090 0.99599 0.86789 1.21666 0.95507 0.81005 1.01349 1.23186 0.94055 0.91984 0.90676 0.93217 1.23551 0.99616 0.97099 0.98264 1.22788 0.94754 0.90466 0.94784 1.46043 1.79213 1.00480 1.06787 1.18132 1.15167 1.11877 0.92063 0.91763 1.25880 0.96094 0.95864 0.95537 1.69909 1.32952 1.10335 1.36933 0.87201 0.82641 0.77489 0.83730 1.24019 1.18197 1.19706 0.90215 0.91258 0.91347 0.84479 0.85672 0.85971 0.85704 0.84751 0.93491 0.91691 0.91870 0.92161 0.88932 0.93190 0.90559 0.95559 0.93700 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.66 36.01 0.35 -1.21 16 2 C -0.11 -1.93 5.89 -104.48 -0.62 -2.54 16 3 C -0.07 -1.08 9.54 -39.26 -0.37 -1.45 16 4 C -0.10 -1.56 5.75 -106.71 -0.61 -2.18 16 5 C -0.10 -1.30 9.77 -39.52 -0.39 -1.68 16 6 C -0.12 -1.41 9.96 -39.89 -0.40 -1.81 16 7 C -0.12 -1.57 9.94 -39.94 -0.40 -1.96 16 8 C -0.08 -1.40 9.77 -39.41 -0.39 -1.79 16 9 C 0.13 2.45 6.61 -84.85 -0.56 1.89 16 10 N -0.41 -9.12 4.82 -7.54 -0.04 -9.15 16 11 C 0.16 3.45 4.68 -82.96 -0.39 3.06 16 12 C 0.58 13.16 2.96 -12.14 -0.04 13.13 16 13 O -0.45 -12.09 13.57 5.37 0.07 -12.02 16 14 N -0.61 -12.31 2.88 -182.53 -0.53 -12.83 16 15 C 0.08 1.36 10.39 59.85 0.62 1.99 16 16 C 0.13 2.48 5.40 -4.04 -0.02 2.46 16 17 C 0.11 2.29 3.50 -66.86 -0.23 2.05 16 18 H 0.05 1.13 6.12 -51.93 -0.32 0.81 16 19 C -0.15 -2.64 7.86 -25.81 -0.20 -2.84 16 20 C 0.10 2.07 8.93 -2.97 -0.03 2.04 16 21 N -0.60 -15.23 2.47 -170.73 -0.42 -15.65 16 22 C -0.24 -7.28 8.68 -15.06 -0.13 -7.41 16 23 H 0.06 2.18 8.06 -52.49 -0.42 1.76 16 24 C 0.07 2.13 3.07 -17.43 -0.05 2.08 16 25 N -0.86 -26.69 12.34 55.49 0.69 -26.00 16 26 Si 0.86 22.96 26.01 -169.99 -4.42 18.53 16 27 H -0.31 -8.80 7.11 56.52 0.40 -8.40 16 28 H -0.26 -6.43 4.21 56.52 0.24 -6.19 16 29 H -0.27 -7.09 4.81 56.52 0.27 -6.82 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.06 6.89 -51.93 -0.36 0.70 16 32 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 2.49 6.72 -52.49 -0.35 2.14 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 40 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 41 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.09 2.02 7.17 -51.93 -0.37 1.65 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.80 7.71 -40.82 -0.31 7.49 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -36.24 364.72 -10.04 -46.28 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.04 Total: 1.53 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.85 Total: 3.82 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.30 Total: -63.64 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.42 Total: 18.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.24 -10.04 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085730838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.702 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds