Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36539 * 120.09000 * 2 1 4 4 C 1.40722 * 118.24145 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.27571 * 180.02562 * 4 3 2 6 6 C 1.36130 * 119.64719 * 179.97438 * 5 4 3 7 7 C 1.39437 * 120.91920 * 0.27284 * 6 5 4 8 8 C 1.35990 * 121.08964 * 359.45974 * 7 6 5 9 9 C 1.40838 * 119.73471 * 0.50806 * 8 7 6 10 10 N 1.33246 * 120.99713 * 179.74956 * 9 8 7 11 11 C 1.31907 * 121.30132 * 179.97438 * 10 9 8 12 12 C 1.48269 * 119.23875 * 180.02562 * 11 10 9 13 13 O 1.21497 * 119.99887 * 255.05099 * 12 11 10 14 14 N 1.34775 * 120.00056 * 75.05602 * 12 11 10 15 15 C 1.46503 * 120.00234 * 5.08861 * 14 12 11 16 16 C 1.46505 * 119.99918 * 185.09303 * 14 12 11 17 17 C 1.53008 * 109.47135 * 97.10015 * 16 14 12 18 18 H 1.09002 * 112.96170 * 48.42870 * 17 16 14 19 19 C 1.53944 * 113.76769 * 180.10978 * 17 16 14 20 20 C 1.53945 * 86.28999 * 137.90590 * 19 17 16 21 21 N 1.47583 * 113.76548 * 276.60472 * 17 16 14 22 22 C 1.36936 * 134.49600 * 41.05733 * 21 17 16 23 23 H 1.07994 * 120.00125 * 238.12203 * 22 21 17 24 24 C 1.38811 * 119.99558 * 58.12249 * 22 21 17 25 25 N 1.31624 * 119.99814 * 198.60761 * 24 22 21 26 26 Si 1.86790 * 120.00415 * 18.60513 * 24 22 21 27 27 H 1.48507 * 109.47400 * 91.66479 * 26 24 22 28 28 H 1.48507 * 109.47397 * 211.66166 * 26 24 22 29 29 H 1.48497 * 109.47356 * 331.66475 * 26 24 22 30 30 H 1.09000 * 109.47089 * 86.05247 * 1 2 3 31 31 H 1.08995 * 109.47038 * 206.05227 * 1 2 3 32 32 H 1.08994 * 109.47088 * 326.05139 * 1 2 3 33 33 H 1.08001 * 120.88217 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.17408 * 359.95748 * 5 4 3 35 35 H 1.07996 * 119.53778 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.45600 * 179.70053 * 7 6 5 37 37 H 1.08001 * 120.13481 * 180.28057 * 8 7 6 38 38 H 1.08993 * 109.47066 * 93.45882 * 15 14 12 39 39 H 1.08997 * 109.47302 * 213.46165 * 15 14 12 40 40 H 1.08999 * 109.46885 * 333.45995 * 15 14 12 41 41 H 1.08996 * 109.46818 * 217.09641 * 16 14 12 42 42 H 1.08996 * 109.46884 * 337.09989 * 16 14 12 43 43 H 1.08996 * 113.74069 * 252.25268 * 19 17 16 44 44 H 1.09003 * 113.74267 * 23.45177 * 19 17 16 45 45 H 1.09000 * 113.77028 * 90.69037 * 20 19 17 46 46 H 1.08996 * 113.77099 * 221.97891 * 20 19 17 47 47 H 0.96998 * 120.00355 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3654 2.3120 -0.0001 6 6 5.7242 2.2295 -0.0001 7 6 6.3668 0.9920 -0.0063 8 6 5.6570 -0.1679 -0.0015 9 6 4.2492 -0.1253 -0.0010 10 7 3.5288 -1.2462 -0.0013 11 6 2.2101 -1.2134 -0.0003 12 6 1.4539 -2.4887 -0.0002 13 8 0.9098 -2.8724 -1.0165 14 7 1.3700 -3.2223 1.1273 15 6 1.9297 -2.7076 2.3795 16 6 0.7191 -4.5346 1.1006 17 6 1.7804 -5.6275 0.9580 18 1 2.6086 -5.5097 1.6568 19 6 1.2011 -7.0532 0.9167 20 6 2.2159 -7.3253 -0.2085 21 7 2.2039 -5.8670 -0.4353 22 6 2.4762 -5.0604 -1.5078 23 1 1.9250 -5.1817 -2.4285 24 6 3.4609 -4.0867 -1.4115 25 7 3.4855 -3.0885 -2.2691 26 14 4.7508 -4.1928 -0.0647 27 1 5.9335 -4.9357 -0.5694 28 1 5.1611 -2.8232 0.3369 29 1 4.1837 -4.9038 1.1091 30 1 -0.3633 0.0707 -1.0252 31 1 -0.3633 -0.9232 0.4513 32 1 -0.3633 0.8524 0.5739 33 1 1.6675 2.1257 0.0004 34 1 3.8801 3.2768 0.0001 35 1 6.3126 3.1351 -0.0001 36 1 7.4462 0.9541 -0.0111 37 1 6.1706 -1.1179 -0.0019 38 1 1.1511 -2.1899 2.9397 39 1 2.3144 -3.5366 2.9734 40 1 2.7399 -2.0133 2.1570 41 1 0.1656 -4.6844 2.0276 42 1 0.0324 -4.5824 0.2555 43 1 1.3867 -7.6286 1.8236 44 1 0.1614 -7.0953 0.5921 45 1 3.1733 -7.7068 0.1461 46 1 1.8081 -7.9040 -1.0373 47 1 4.1733 -2.4079 -2.2016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085730838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = 82.320739 kcal Electronic energy + Delta-G solvation = -31468.592597 eV Core-core repulsion = 27618.394521 eV Total energy + Delta-G solvation = -3850.198076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04466 -40.62318 -39.34836 -37.83619 -36.21770 -35.11507 -34.18061 -32.71262 -31.38246 -30.35126 -29.64134 -28.04017 -27.49965 -26.01475 -24.73760 -23.94283 -23.45475 -23.01796 -21.04578 -20.83358 -18.93307 -18.60277 -18.36686 -17.67346 -17.39030 -16.92743 -16.42749 -16.28313 -15.63037 -15.54508 -15.42416 -15.08833 -14.88426 -14.80458 -14.51180 -14.17423 -14.05056 -13.99408 -13.91320 -13.66448 -13.43378 -13.31527 -13.26184 -12.99653 -12.64889 -12.52986 -12.48705 -12.33756 -12.27761 -11.83426 -11.78255 -11.67790 -11.33948 -11.29691 -10.76254 -10.33825 -10.00401 -9.57295 -9.37027 -9.15945 -8.20746 -7.94189 -5.61089 -0.56594 -0.21875 1.05632 1.37255 1.45455 1.68572 1.71696 2.00294 2.28592 2.63246 3.07597 3.17276 3.33910 3.48061 3.57590 3.71330 3.83816 3.92916 3.96175 4.10474 4.21141 4.23855 4.28673 4.37627 4.42914 4.45937 4.50803 4.57223 4.64690 4.70073 4.73090 4.76642 4.81674 4.87662 4.95150 5.03028 5.05961 5.07887 5.10431 5.16182 5.20277 5.41719 5.47196 5.61210 5.62896 5.82889 5.94243 6.10759 6.42562 6.57321 6.80125 6.97108 7.53582 7.67115 8.64461 9.20476 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.005341 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.797179 B = 5241.096654 C = 6128.589293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.135 4.135 3 C -0.052 4.052 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.094 4.094 8 C -0.126 4.126 9 C 0.094 3.906 10 N -0.454 5.454 11 C 0.133 3.867 12 C 0.578 3.422 13 O -0.511 6.511 14 N -0.615 5.615 15 C 0.081 3.919 16 C 0.129 3.871 17 C 0.103 3.897 18 H 0.045 0.955 19 C -0.114 4.114 20 C 0.087 3.913 21 N -0.627 5.627 22 C -0.243 4.243 23 H 0.001 0.999 24 C 0.045 3.955 25 N -0.898 5.898 26 Si 0.913 3.087 27 H -0.335 1.335 28 H -0.239 1.239 29 H -0.259 1.259 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.033 0.967 46 H 0.043 0.957 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.625 13.262 14.616 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C -0.077 4.077 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.145 4.145 9 C -0.029 4.029 10 N -0.165 5.165 11 C -0.022 4.022 12 C 0.363 3.637 13 O -0.382 6.382 14 N -0.350 5.350 15 C -0.061 4.061 16 C 0.006 3.994 17 C -0.003 4.003 18 H 0.063 0.937 19 C -0.152 4.152 20 C -0.037 4.037 21 N -0.356 5.356 22 C -0.372 4.372 23 H 0.019 0.981 24 C -0.158 4.158 25 N -0.537 5.537 26 Si 0.742 3.258 27 H -0.266 1.266 28 H -0.163 1.163 29 H -0.185 1.185 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.204 0.796 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.171 0.829 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.307 12.580 13.800 18.719 hybrid contribution 0.937 -0.103 -0.461 1.049 sum -0.370 12.477 13.339 18.268 Atomic orbital electron populations 1.20731 0.88317 1.03650 1.03023 1.20774 0.98952 0.92498 1.01550 1.21638 0.92092 0.98798 0.95191 1.19235 0.95126 0.94514 1.02356 1.21388 0.94330 0.97125 0.98050 1.21365 0.94883 0.98320 0.98399 1.21242 1.01494 0.91550 0.97045 1.21010 0.91529 0.99821 1.02113 1.19369 0.94906 0.88784 0.99854 1.68072 1.06580 1.30922 1.10886 1.21337 0.90357 0.94201 0.96321 1.17900 0.80012 0.82762 0.83065 1.90827 1.45738 1.69339 1.32339 1.47637 1.59469 1.18802 1.09085 1.21822 0.98830 1.00047 0.85439 1.21676 0.94724 0.80477 1.02560 1.23309 0.94469 0.94933 0.87562 0.93732 1.23340 0.98985 0.94492 0.98373 1.22979 0.96387 0.87893 0.96458 1.46266 1.79707 1.02120 1.07486 1.17590 1.14502 1.13159 0.91923 0.98140 1.26158 0.97255 0.95119 0.97244 1.70030 1.33511 1.11139 1.39000 0.86412 0.79456 0.78011 0.81877 1.26570 1.16332 1.18477 0.91370 0.93101 0.86997 0.79602 0.81267 0.81389 0.82872 0.87614 0.89720 0.90229 0.93548 0.86973 0.92112 0.88790 0.89279 0.94945 0.93822 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.82 9.66 71.24 0.69 -2.13 16 2 C -0.14 -4.65 5.89 -19.77 -0.12 -4.76 16 3 C -0.05 -1.41 9.54 22.48 0.21 -1.20 16 4 C -0.11 -3.33 5.75 -21.22 -0.12 -3.45 16 5 C -0.09 -1.87 9.77 22.31 0.22 -1.65 16 6 C -0.11 -2.13 9.96 22.07 0.22 -1.91 16 7 C -0.09 -2.31 9.94 22.04 0.22 -2.09 16 8 C -0.13 -4.47 9.77 22.38 0.22 -4.25 16 9 C 0.09 3.68 6.61 40.48 0.27 3.95 16 10 N -0.45 -20.96 4.82 -177.77 -0.86 -21.82 16 11 C 0.13 5.86 4.68 42.29 0.20 6.06 16 12 C 0.58 27.74 2.96 86.91 0.26 28.00 16 13 O -0.51 -29.87 13.57 -3.71 -0.05 -29.92 16 14 N -0.62 -24.97 2.88 -849.71 -2.44 -27.42 16 15 C 0.08 2.57 10.39 127.77 1.33 3.90 16 16 C 0.13 4.94 5.40 86.38 0.47 5.40 16 17 C 0.10 4.30 3.50 45.09 0.16 4.45 16 18 H 0.05 1.94 6.12 -2.39 -0.01 1.93 16 19 C -0.11 -3.79 7.86 31.25 0.25 -3.55 16 20 C 0.09 3.70 8.93 86.48 0.77 4.47 16 21 N -0.63 -33.00 2.47 -694.06 -1.71 -34.71 16 22 C -0.24 -15.50 8.68 84.03 0.73 -14.77 16 23 H 0.00 0.08 8.06 -2.91 -0.02 0.06 16 24 C 0.05 2.84 3.07 84.86 0.26 3.10 16 25 N -0.90 -59.62 12.34 21.65 0.27 -59.36 16 26 Si 0.91 50.24 26.01 68.60 1.78 52.03 16 27 H -0.33 -19.50 7.11 99.48 0.71 -18.79 16 28 H -0.24 -12.46 4.21 99.48 0.42 -12.05 16 29 H -0.26 -13.51 4.81 99.48 0.48 -13.03 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.58 6.89 -2.39 -0.02 1.57 16 32 H 0.11 2.05 8.11 -2.39 -0.02 2.03 16 33 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.11 4.19 6.72 -2.91 -0.02 4.17 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.25 8.06 -2.39 -0.02 2.23 16 40 H 0.05 1.65 6.16 -2.39 -0.01 1.64 16 41 H 0.11 3.10 8.12 -2.39 -0.02 3.08 16 42 H 0.06 2.75 7.17 -2.39 -0.02 2.73 16 43 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.09 2.79 8.10 -2.39 -0.02 2.77 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.25 16.44 7.71 -92.71 -0.72 15.72 16 Total: -1.00 -92.19 364.72 3.72 -88.47 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.51 Total: 13.15 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.22 Total: 19.58 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -4.75 Total: -143.30 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.92 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.78 Total: 52.03 kcal Total: -92.19 3.72 -88.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085730838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.792 kcal (2) G-P(sol) polarization free energy of solvation -92.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds