Wall clock time and date at job start Tue Mar 31 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39314 * 119.11534 * 2 1 4 4 C 1.36571 * 119.90421 * 179.97438 * 3 2 1 5 5 C 1.40894 * 118.15729 * 359.97438 * 4 3 2 6 6 C 1.40187 * 121.21335 * 180.02562 * 5 4 3 7 7 C 1.38548 * 119.39942 * 180.02562 * 6 5 4 8 8 C 1.47770 * 119.80309 * 180.02562 * 7 6 5 9 9 O 1.21566 * 119.99991 * 329.14807 * 8 7 6 10 10 N 1.34777 * 120.00021 * 149.14846 * 8 7 6 11 11 C 1.46500 * 119.99691 * 4.80405 * 10 8 7 12 12 C 1.46497 * 119.99886 * 184.80660 * 10 8 7 13 13 C 1.53005 * 109.47039 * 94.52478 * 12 10 8 14 14 H 1.09001 * 112.96308 * 67.10824 * 13 12 10 15 15 C 1.53944 * 113.77129 * 295.42599 * 13 12 10 16 16 C 1.53944 * 86.28892 * 222.09327 * 15 13 12 17 17 N 1.47579 * 113.76639 * 198.92687 * 13 12 10 18 18 C 1.36932 * 134.49854 * 318.94419 * 17 13 12 19 19 H 1.07996 * 119.99752 * 5.53378 * 18 17 13 20 20 C 1.38812 * 120.00088 * 185.52628 * 18 17 13 21 21 N 1.31623 * 120.00105 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46837 * 90.00519 * 22 20 18 24 24 H 1.48499 * 109.47171 * 210.00387 * 22 20 18 25 25 H 1.48500 * 109.47140 * 330.00509 * 22 20 18 26 26 C 1.40631 * 120.39019 * 359.97438 * 7 6 5 27 27 C 1.35701 * 120.92332 * 359.76834 * 26 7 6 28 28 C 1.40753 * 120.11416 * 0.48649 * 27 26 7 29 29 N 1.31123 * 119.11240 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47814 * 269.98679 * 1 2 3 31 31 H 1.08997 * 109.47172 * 29.98814 * 1 2 3 32 32 H 1.09003 * 109.47154 * 149.98224 * 1 2 3 33 33 H 1.08005 * 120.04721 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.92334 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.29865 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.46749 * 94.66599 * 11 10 8 37 37 H 1.09001 * 109.46892 * 214.66007 * 11 10 8 38 38 H 1.08994 * 109.47532 * 334.66219 * 11 10 8 39 39 H 1.09001 * 109.47055 * 214.52370 * 12 10 8 40 40 H 1.09000 * 109.47412 * 334.52674 * 12 10 8 41 41 H 1.08999 * 113.73683 * 336.44217 * 15 13 12 42 42 H 1.09001 * 113.73924 * 107.63702 * 15 13 12 43 43 H 1.09000 * 113.76617 * 137.91334 * 16 15 13 44 44 H 1.08998 * 113.76619 * 269.19184 * 16 15 13 45 45 H 0.96994 * 119.99814 * 179.97438 * 21 20 18 46 46 H 1.07996 * 119.53754 * 180.02562 * 26 7 6 47 47 H 1.08002 * 119.94311 * 180.27030 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5504 1.2359 0.0005 5 6 4.2323 0.0030 0.0016 6 6 5.6331 -0.0525 0.0027 7 6 6.2649 -1.2855 0.0033 8 6 7.7410 -1.3544 0.0050 9 8 8.3909 -0.4797 -0.5339 10 7 8.3668 -2.3868 0.6041 11 6 7.5850 -3.4935 1.1612 12 6 9.8286 -2.4024 0.6983 13 6 10.2590 -1.8207 2.0464 14 1 9.9712 -2.4467 2.8910 15 6 9.8991 -0.3346 2.2244 16 6 11.2979 -0.1736 2.8468 17 7 11.6672 -1.3806 2.0819 18 6 12.8438 -1.8880 1.5992 19 1 12.8363 -2.7713 0.9778 20 6 14.0462 -1.2671 1.9083 21 7 14.0554 -0.1908 2.6660 22 14 15.6515 -1.9599 1.2503 23 1 15.9556 -1.3406 -0.0647 24 1 16.7486 -1.6590 2.2048 25 1 15.5262 -3.4306 1.0878 26 6 5.5098 -2.4719 0.0032 27 6 4.1533 -2.4351 0.0073 28 6 3.4803 -1.1988 0.0015 29 7 2.1449 -1.1456 -0.0005 30 1 -0.3635 -0.0002 1.0277 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6312 2.1445 0.0004 34 1 4.0926 2.1699 0.0001 35 1 6.2144 0.8577 0.0024 36 1 7.5143 -4.2947 0.4256 37 1 8.0746 -3.8678 2.0602 38 1 6.5845 -3.1414 1.4122 39 1 10.1872 -3.4282 0.6140 40 1 10.2511 -1.8024 -0.1078 41 1 9.7727 0.2019 1.2841 42 1 9.0825 -0.1618 2.9253 43 1 11.8207 0.7273 2.5254 44 1 11.3166 -0.3134 3.9276 45 1 14.8956 0.2428 2.8823 46 1 6.0165 -3.4255 0.0040 47 1 3.5890 -3.3560 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085883356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:24 Heat of formation + Delta-G solvation = 78.570905 kcal Electronic energy + Delta-G solvation = -28630.679653 eV Core-core repulsion = 24780.318971 eV Total energy + Delta-G solvation = -3850.360681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09845 -41.08062 -39.53976 -37.98707 -36.64945 -34.54286 -34.25155 -33.15246 -31.18510 -30.41581 -29.85733 -28.64104 -27.67968 -25.34743 -24.86627 -24.76758 -23.43502 -23.06972 -21.07610 -20.66288 -19.56817 -18.65711 -18.28610 -17.69710 -17.13571 -17.06444 -16.63456 -16.33587 -15.88670 -15.71166 -15.56992 -15.34493 -15.21875 -14.80977 -14.50866 -14.22818 -14.04040 -13.89301 -13.86298 -13.82864 -13.36447 -13.18013 -13.06882 -12.95428 -12.89830 -12.62325 -12.50215 -12.31611 -12.26715 -11.94500 -11.83998 -11.61267 -11.55407 -11.28081 -10.92947 -10.86380 -10.51784 -9.72893 -9.66685 -9.27500 -8.89555 -7.90019 -5.23079 -0.78452 -0.33456 0.87109 1.41282 1.43801 1.46980 1.54721 1.83625 2.20075 2.48878 3.02863 3.16963 3.28462 3.36708 3.48977 3.56373 3.68535 3.85797 3.88808 3.98946 4.01974 4.16253 4.21937 4.30783 4.36107 4.41427 4.46593 4.61793 4.68763 4.75965 4.80314 4.83263 4.84648 4.89156 4.91428 4.95624 4.98634 5.01802 5.07774 5.20128 5.20985 5.22809 5.26303 5.45573 5.52112 5.55472 5.71150 5.77406 5.93326 6.37352 6.90334 6.91371 7.10934 7.61578 8.57982 9.28267 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.002239 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.443606 B =12503.923533 C =12992.819797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.173 4.173 4 C -0.053 4.053 5 C -0.134 4.134 6 C -0.034 4.034 7 C -0.141 4.141 8 C 0.552 3.448 9 O -0.576 6.576 10 N -0.598 5.598 11 C 0.048 3.952 12 C 0.128 3.872 13 C 0.135 3.865 14 H 0.062 0.938 15 C -0.135 4.135 16 C 0.161 3.839 17 N -0.629 5.629 18 C -0.226 4.226 19 H 0.088 0.912 20 C -0.074 4.074 21 N -0.958 5.958 22 Si 0.979 3.021 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.263 1.263 26 C -0.085 4.085 27 C -0.103 4.103 28 C 0.129 3.871 29 N -0.506 5.506 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.021 0.979 45 H 0.247 0.753 46 H 0.178 0.822 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.163 -3.218 -4.217 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.006 3.994 3 C -0.192 4.192 4 C -0.078 4.078 5 C -0.136 4.136 6 C -0.054 4.054 7 C -0.144 4.144 8 C 0.342 3.658 9 O -0.456 6.456 10 N -0.329 5.329 11 C -0.092 4.092 12 C 0.004 3.996 13 C 0.029 3.971 14 H 0.079 0.921 15 C -0.173 4.173 16 C 0.035 3.965 17 N -0.355 5.355 18 C -0.355 4.355 19 H 0.106 0.894 20 C -0.267 4.267 21 N -0.607 5.607 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.188 1.188 26 C -0.104 4.104 27 C -0.121 4.121 28 C 0.008 3.992 29 N -0.217 5.217 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.195 0.805 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -30.858 -3.688 -4.532 31.406 hybrid contribution 2.202 0.840 0.000 2.357 sum -28.656 -2.848 -4.532 29.152 Atomic orbital electron populations 1.20918 0.86116 1.04828 1.04431 1.22252 0.98925 0.88160 0.90053 1.22113 0.94628 1.00410 1.02048 1.21909 0.95368 0.97395 0.93127 1.18932 0.93819 0.95523 1.05315 1.21433 0.92959 0.97638 0.93381 1.19814 0.91761 0.95457 1.07369 1.18698 0.87957 0.81194 0.77962 1.90791 1.68069 1.40210 1.46530 1.47667 1.06521 1.21921 1.56767 1.22871 0.97554 0.88571 1.00236 1.21428 0.78996 1.01657 0.97498 1.22660 0.83872 0.94697 0.95886 0.92059 1.23533 0.96455 0.96934 1.00397 1.22014 0.90806 0.90363 0.93314 1.46306 1.02055 1.24374 1.62809 1.19418 0.83591 1.08918 1.23531 0.89388 1.25703 1.00993 0.98958 1.01025 1.70039 1.25518 1.22478 1.42673 0.85071 0.78964 0.78419 0.76856 1.21647 1.22183 1.18780 1.21812 0.93796 0.98737 0.96038 1.20918 0.93677 0.96917 1.00635 1.19297 0.89626 0.93592 0.96670 1.67965 1.08124 1.30037 1.15536 0.88787 0.87945 0.90579 0.80887 0.82073 0.84770 0.89210 0.90011 0.87726 0.89423 0.92386 0.91454 0.90991 0.95241 0.96073 0.94426 0.80528 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.14 71.23 0.72 -0.08 16 2 C 0.16 2.38 6.78 42.92 0.29 2.68 16 3 C -0.17 -2.15 9.64 22.14 0.21 -1.94 16 4 C -0.05 -0.84 9.89 22.53 0.22 -0.62 16 5 C -0.13 -2.87 5.74 -21.28 -0.12 -2.99 16 6 C -0.03 -0.83 9.34 22.82 0.21 -0.62 16 7 C -0.14 -3.49 5.51 -20.10 -0.11 -3.60 16 8 C 0.55 17.44 6.92 86.76 0.60 18.04 16 9 O -0.58 -23.68 14.79 -3.92 -0.06 -23.74 16 10 N -0.60 -16.72 2.79 -850.28 -2.37 -19.09 16 11 C 0.05 0.81 8.81 127.77 1.13 1.93 16 12 C 0.13 4.60 5.46 86.38 0.47 5.07 16 13 C 0.14 5.56 4.59 45.09 0.21 5.77 16 14 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.13 -5.69 7.22 31.25 0.23 -5.47 16 16 C 0.16 8.30 7.38 86.48 0.64 8.94 16 17 N -0.63 -33.54 3.57 -694.06 -2.48 -36.01 16 18 C -0.23 -12.97 10.51 84.03 0.88 -12.09 16 19 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 20 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.96 -60.50 11.53 21.65 0.25 -60.25 16 22 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 C -0.08 -1.52 7.33 22.27 0.16 -1.36 16 27 C -0.10 -1.85 9.95 22.30 0.22 -1.63 16 28 C 0.13 2.79 6.61 40.35 0.27 3.06 16 29 N -0.51 -10.36 10.23 -176.58 -1.81 -12.16 16 30 H 0.09 0.52 8.14 -2.38 -0.02 0.51 16 31 H 0.10 0.27 8.07 -2.39 -0.02 0.25 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.13 3.35 7.91 -2.91 -0.02 3.33 16 36 H 0.09 1.03 7.46 -2.39 -0.02 1.01 16 37 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 38 H 0.10 1.46 4.58 -2.39 -0.01 1.45 16 39 H 0.09 2.81 8.11 -2.39 -0.02 2.79 16 40 H 0.06 2.54 7.23 -2.39 -0.02 2.52 16 41 H 0.07 3.11 6.68 -2.39 -0.02 3.09 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.03 1.71 7.42 -2.39 -0.02 1.69 16 44 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.18 2.18 4.61 -2.91 -0.01 2.16 16 47 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -81.41 382.31 3.25 -78.17 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.99 Total: 12.71 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.70 Total: 11.17 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.41 Total: -127.52 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -81.41 3.25 -78.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085883356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.738 kcal (2) G-P(sol) polarization free energy of solvation -81.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds