Wall clock time and date at job start Tue Mar 31 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39312 * 119.06170 * 2 1 4 4 C 1.38857 * 119.57711 * 180.30213 * 3 2 1 5 5 C 1.47900 * 121.11383 * 179.70022 * 4 3 2 6 6 O 1.21544 * 120.00503 * 132.39406 * 5 4 3 7 7 N 1.34775 * 119.99751 * 312.39965 * 5 4 3 8 8 C 1.46504 * 120.00068 * 4.67190 * 7 5 4 9 9 C 1.46502 * 120.00062 * 184.67737 * 7 5 4 10 10 C 1.52999 * 109.47620 * 87.41542 * 9 7 5 11 11 H 1.09004 * 112.96352 * 290.53614 * 10 9 7 12 12 C 1.53952 * 113.76891 * 62.20599 * 10 9 7 13 13 C 1.53941 * 86.28915 * 137.91068 * 12 10 9 14 14 N 1.47578 * 113.77225 * 158.84920 * 10 9 7 15 15 C 1.36940 * 134.48980 * 41.07161 * 14 10 9 16 16 H 1.07995 * 119.99796 * 4.29595 * 15 14 10 17 17 C 1.38808 * 119.99706 * 184.29074 * 15 14 10 18 18 N 1.31618 * 120.00509 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99775 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47039 * 90.00158 * 19 17 15 21 21 H 1.48504 * 109.47018 * 210.00075 * 19 17 15 22 22 H 1.48495 * 109.46975 * 330.00116 * 19 17 15 23 23 C 1.41823 * 117.77725 * 359.42178 * 4 3 2 24 24 C 1.40099 * 121.37487 * 180.27163 * 23 4 3 25 25 C 1.36247 * 119.64542 * 179.97438 * 24 23 4 26 26 C 1.39353 * 120.83848 * 0.03068 * 25 24 23 27 27 C 1.36064 * 121.04411 * 359.96712 * 26 25 24 28 28 C 1.40710 * 119.74260 * 0.02562 * 27 26 25 29 29 N 1.30973 * 119.05349 * 179.66914 * 2 1 3 30 30 H 1.08999 * 109.47084 * 270.33509 * 1 2 3 31 31 H 1.09005 * 109.46886 * 30.32698 * 1 2 3 32 32 H 1.08993 * 109.47582 * 150.33070 * 1 2 3 33 33 H 1.08001 * 120.21358 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47014 * 88.53868 * 8 7 5 35 35 H 1.09003 * 109.46908 * 208.53855 * 8 7 5 36 36 H 1.08998 * 109.46957 * 328.53213 * 8 7 5 37 37 H 1.09001 * 109.47077 * 207.41470 * 9 7 5 38 38 H 1.08999 * 109.47203 * 327.41168 * 9 7 5 39 39 H 1.08994 * 113.74441 * 252.26224 * 12 10 9 40 40 H 1.09008 * 113.73893 * 23.46031 * 12 10 9 41 41 H 1.09000 * 113.76815 * 90.69291 * 13 12 10 42 42 H 1.09003 * 113.77294 * 221.98239 * 13 12 10 43 43 H 0.96998 * 120.00319 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.17623 * 0.02562 * 24 23 4 45 45 H 1.07998 * 119.58330 * 180.02562 * 25 24 23 46 46 H 1.07991 * 119.47798 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.12754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2302 -0.0064 5 6 4.3250 2.5033 -0.0132 6 8 5.2488 2.6673 0.7595 7 7 3.9866 3.4816 -0.8762 8 6 2.8108 3.3254 -1.7361 9 6 4.7946 4.7011 -0.9546 10 6 5.9379 4.4926 -1.9497 11 1 6.6898 3.7890 -1.5922 12 6 5.4654 4.2176 -3.3889 13 6 6.5936 5.1658 -3.8338 14 7 6.5028 5.7491 -2.4787 15 6 6.8156 6.9654 -1.9327 16 1 6.7124 7.1225 -0.8693 17 6 7.2654 7.9962 -2.7463 18 7 7.3908 7.8049 -4.0424 19 14 7.6928 9.6552 -2.0014 20 1 9.1262 9.6692 -1.6136 21 1 7.4395 10.7257 -2.9990 22 1 6.8525 9.8895 -0.7997 23 6 4.2445 -0.0185 0.0000 24 6 5.6434 -0.0938 -0.0001 25 6 6.2528 -1.3124 0.0067 26 6 5.5020 -2.4865 0.0130 27 6 4.1419 -2.4496 0.0133 28 6 3.4772 -1.2094 0.0066 29 7 2.1431 -1.1449 0.0066 30 1 -0.3633 0.0060 1.0276 31 1 -0.3633 0.8871 -0.5189 32 1 -0.3634 -0.8929 -0.5086 33 1 1.6319 2.1461 -0.0004 34 1 1.9283 3.6980 -1.2160 35 1 2.9560 3.8912 -2.6564 36 1 2.6734 2.2711 -1.9758 37 1 4.1700 5.5301 -1.2874 38 1 5.2059 4.9283 0.0290 39 1 5.6083 3.1853 -3.7080 40 1 4.4645 4.5935 -3.6015 41 1 7.5396 4.6612 -4.0304 42 1 6.3033 5.8508 -4.6305 43 1 7.7055 8.5251 -4.6108 44 1 6.2357 0.8093 -0.0046 45 1 7.3312 -1.3693 0.0070 46 1 6.0078 -3.4406 0.0179 47 1 3.5747 -3.3687 0.0179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085958815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:35 Heat of formation + Delta-G solvation = 86.261514 kcal Electronic energy + Delta-G solvation = -29279.183026 eV Core-core repulsion = 25429.155835 eV Total energy + Delta-G solvation = -3850.027191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37313 -39.60719 -37.83337 -37.59030 -35.32929 -33.68361 -32.26094 -32.14942 -30.45767 -28.62983 -27.99463 -27.86206 -26.73456 -24.44568 -23.52686 -23.27991 -22.72632 -21.88318 -19.48341 -19.00551 -18.34938 -17.66364 -17.20059 -16.67642 -15.99677 -15.64771 -15.58025 -14.92960 -14.88102 -14.66765 -14.42556 -14.06468 -13.85508 -13.68950 -13.48839 -13.30476 -13.28453 -12.81683 -12.64289 -12.51611 -12.31947 -12.17450 -11.74678 -11.59580 -11.54368 -11.43428 -11.06875 -10.93647 -10.70401 -10.64311 -10.49955 -10.30176 -9.85247 -9.76441 -9.62398 -9.47856 -8.90079 -8.78424 -8.48698 -8.40619 -6.87945 -5.75861 -3.09558 -0.00872 0.56303 1.59582 2.55581 2.72024 3.01652 3.39161 3.44522 3.45796 3.86471 3.87788 4.13491 4.39868 4.46968 4.47764 4.62468 4.86653 4.90427 5.03678 5.08515 5.11067 5.17632 5.24725 5.28391 5.31060 5.41294 5.47283 5.53987 5.56616 5.63338 5.65734 5.77260 5.84656 5.85957 5.91130 6.12841 6.14052 6.22364 6.28181 6.30723 6.39123 6.53659 6.62963 6.67617 6.75171 7.24005 7.35976 7.44803 7.58937 7.65728 7.98924 8.09466 9.04757 9.71395 10.60417 11.40278 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.002802 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.895292 B = 9988.718798 C =10694.478568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.155 3.845 3 C -0.145 4.145 4 C -0.051 4.051 5 C 0.554 3.446 6 O -0.523 6.523 7 N -0.593 5.593 8 C 0.069 3.931 9 C 0.116 3.884 10 C 0.130 3.870 11 H 0.046 0.954 12 C -0.158 4.158 13 C 0.156 3.844 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C -0.074 4.074 24 C -0.084 4.084 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.100 4.100 28 C 0.134 3.866 29 N -0.467 5.467 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.253 0.747 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.377 -19.396 5.304 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.003 3.997 3 C -0.165 4.165 4 C -0.062 4.062 5 C 0.341 3.659 6 O -0.399 6.399 7 N -0.325 5.325 8 C -0.074 4.074 9 C -0.007 4.007 10 C 0.022 3.978 11 H 0.063 0.937 12 C -0.197 4.197 13 C 0.031 3.969 14 N -0.327 5.327 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.077 4.077 24 C -0.103 4.103 25 C -0.136 4.136 26 C -0.115 4.115 27 C -0.119 4.119 28 C 0.012 3.988 29 N -0.177 5.177 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.154 -19.752 5.689 24.403 hybrid contribution 0.930 1.726 0.360 1.993 sum -12.224 -18.026 6.048 22.604 Atomic orbital electron populations 1.20790 0.88137 1.03908 1.03463 1.21398 0.97227 0.87625 0.93493 1.22325 0.93337 1.00006 1.00867 1.20439 0.94018 0.93472 0.98288 1.18112 0.83646 0.82950 0.81211 1.90813 1.29512 1.80309 1.39288 1.47749 1.28385 1.18433 1.37974 1.22130 0.87165 1.02735 0.95401 1.21902 0.93247 0.84071 1.01448 1.22519 0.92779 0.89833 0.92681 0.93669 1.23772 1.00290 0.98388 0.97215 1.22294 0.92879 0.91462 0.90227 1.46055 1.73507 1.07228 1.05930 1.19021 1.38035 0.85775 0.92221 0.90373 1.24764 1.01917 0.98066 0.95540 1.69817 1.52031 1.32021 1.02855 0.86153 0.78286 0.83629 0.77898 1.21652 1.21655 1.20584 1.18597 0.94968 0.92163 1.01940 1.21276 0.92941 0.99424 0.96614 1.21021 1.00678 0.92072 0.99844 1.20962 0.93712 0.98792 0.98021 1.20761 0.94196 0.96024 1.00910 1.18774 0.88768 0.92763 0.98518 1.67629 1.08708 1.28803 1.12541 0.90030 0.90239 0.90105 0.83649 0.92351 0.89790 0.91137 0.89331 0.90246 0.93436 0.90856 0.95917 0.90412 0.93701 0.84117 0.85202 0.85149 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.14 36.01 0.37 -0.31 16 2 C 0.16 1.58 6.78 -82.56 -0.56 1.02 16 3 C -0.14 -1.52 7.38 -38.95 -0.29 -1.81 16 4 C -0.05 -0.68 4.99 -104.34 -0.52 -1.20 16 5 C 0.55 8.68 6.76 -12.30 -0.08 8.60 16 6 O -0.52 -9.99 14.93 5.33 0.08 -9.91 16 7 N -0.59 -8.60 2.75 -182.67 -0.50 -9.11 16 8 C 0.07 0.72 8.73 59.85 0.52 1.25 16 9 C 0.12 2.07 5.36 -4.04 -0.02 2.04 16 10 C 0.13 2.67 4.58 -66.86 -0.31 2.36 16 11 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 12 C -0.16 -2.94 7.09 -25.79 -0.18 -3.12 16 13 C 0.16 3.68 7.63 -2.85 -0.02 3.66 16 14 N -0.60 -15.20 3.58 -169.72 -0.61 -15.80 16 15 C -0.22 -6.18 10.51 -15.06 -0.16 -6.34 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.10 11.33 55.49 0.63 -26.47 16 19 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.07 -1.02 5.76 -106.52 -0.61 -1.63 16 24 C -0.08 -1.13 9.21 -39.60 -0.36 -1.49 16 25 C -0.12 -1.27 9.96 -39.88 -0.40 -1.66 16 26 C -0.10 -0.88 9.94 -39.95 -0.40 -1.28 16 27 C -0.10 -1.05 9.98 -39.43 -0.39 -1.44 16 28 C 0.13 1.70 6.61 -84.87 -0.56 1.14 16 29 N -0.47 -5.67 10.19 -7.25 -0.07 -5.74 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.15 1.17 6.36 -52.49 -0.33 0.84 16 34 H 0.06 0.48 7.31 -51.93 -0.38 0.10 16 35 H 0.08 0.90 6.08 -51.93 -0.32 0.58 16 36 H 0.07 0.67 5.94 -51.93 -0.31 0.37 16 37 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 38 H 0.08 1.55 7.44 -51.93 -0.39 1.16 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.26 6.49 -51.92 -0.34 0.92 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 2.00 6.99 -51.93 -0.36 1.63 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.14 2.11 6.25 -52.49 -0.33 1.79 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -33.85 380.60 -10.36 -44.21 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.52 Total: 0.48 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -4.08 Total: -0.51 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.56 Total: -57.12 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.85 -10.36 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.474 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds