Wall clock time and date at job start Tue Mar 31 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39312 * 119.06170 * 2 1 4 4 C 1.38857 * 119.57711 * 180.30213 * 3 2 1 5 5 C 1.47900 * 121.11383 * 179.70022 * 4 3 2 6 6 O 1.21544 * 120.00503 * 132.39406 * 5 4 3 7 7 N 1.34775 * 119.99751 * 312.39965 * 5 4 3 8 8 C 1.46504 * 120.00068 * 4.67190 * 7 5 4 9 9 C 1.46502 * 120.00062 * 184.67737 * 7 5 4 10 10 C 1.52999 * 109.47620 * 87.41542 * 9 7 5 11 11 H 1.09004 * 112.96352 * 290.53614 * 10 9 7 12 12 C 1.53952 * 113.76891 * 62.20599 * 10 9 7 13 13 C 1.53941 * 86.28915 * 137.91068 * 12 10 9 14 14 N 1.47578 * 113.77225 * 158.84920 * 10 9 7 15 15 C 1.36940 * 134.48980 * 41.07161 * 14 10 9 16 16 H 1.07995 * 119.99796 * 4.29595 * 15 14 10 17 17 C 1.38808 * 119.99706 * 184.29074 * 15 14 10 18 18 N 1.31618 * 120.00509 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99775 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47039 * 90.00158 * 19 17 15 21 21 H 1.48504 * 109.47018 * 210.00075 * 19 17 15 22 22 H 1.48495 * 109.46975 * 330.00116 * 19 17 15 23 23 C 1.41823 * 117.77725 * 359.42178 * 4 3 2 24 24 C 1.40099 * 121.37487 * 180.27163 * 23 4 3 25 25 C 1.36247 * 119.64542 * 179.97438 * 24 23 4 26 26 C 1.39353 * 120.83848 * 0.03068 * 25 24 23 27 27 C 1.36064 * 121.04411 * 359.96712 * 26 25 24 28 28 C 1.40710 * 119.74260 * 0.02562 * 27 26 25 29 29 N 1.30973 * 119.05349 * 179.66914 * 2 1 3 30 30 H 1.08999 * 109.47084 * 270.33509 * 1 2 3 31 31 H 1.09005 * 109.46886 * 30.32698 * 1 2 3 32 32 H 1.08993 * 109.47582 * 150.33070 * 1 2 3 33 33 H 1.08001 * 120.21358 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47014 * 88.53868 * 8 7 5 35 35 H 1.09003 * 109.46908 * 208.53855 * 8 7 5 36 36 H 1.08998 * 109.46957 * 328.53213 * 8 7 5 37 37 H 1.09001 * 109.47077 * 207.41470 * 9 7 5 38 38 H 1.08999 * 109.47203 * 327.41168 * 9 7 5 39 39 H 1.08994 * 113.74441 * 252.26224 * 12 10 9 40 40 H 1.09008 * 113.73893 * 23.46031 * 12 10 9 41 41 H 1.09000 * 113.76815 * 90.69291 * 13 12 10 42 42 H 1.09003 * 113.77294 * 221.98239 * 13 12 10 43 43 H 0.96998 * 120.00319 * 180.02562 * 18 17 15 44 44 H 1.08002 * 120.17623 * 0.02562 * 24 23 4 45 45 H 1.07998 * 119.58330 * 180.02562 * 25 24 23 46 46 H 1.07991 * 119.47798 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.12754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2302 -0.0064 5 6 4.3250 2.5033 -0.0132 6 8 5.2488 2.6673 0.7595 7 7 3.9866 3.4816 -0.8762 8 6 2.8108 3.3254 -1.7361 9 6 4.7946 4.7011 -0.9546 10 6 5.9379 4.4926 -1.9497 11 1 6.6898 3.7890 -1.5922 12 6 5.4654 4.2176 -3.3889 13 6 6.5936 5.1658 -3.8338 14 7 6.5028 5.7491 -2.4787 15 6 6.8156 6.9654 -1.9327 16 1 6.7124 7.1225 -0.8693 17 6 7.2654 7.9962 -2.7463 18 7 7.3908 7.8049 -4.0424 19 14 7.6928 9.6552 -2.0014 20 1 9.1262 9.6692 -1.6136 21 1 7.4395 10.7257 -2.9990 22 1 6.8525 9.8895 -0.7997 23 6 4.2445 -0.0185 0.0000 24 6 5.6434 -0.0938 -0.0001 25 6 6.2528 -1.3124 0.0067 26 6 5.5020 -2.4865 0.0130 27 6 4.1419 -2.4496 0.0133 28 6 3.4772 -1.2094 0.0066 29 7 2.1431 -1.1449 0.0066 30 1 -0.3633 0.0060 1.0276 31 1 -0.3633 0.8871 -0.5189 32 1 -0.3634 -0.8929 -0.5086 33 1 1.6319 2.1461 -0.0004 34 1 1.9283 3.6980 -1.2160 35 1 2.9560 3.8912 -2.6564 36 1 2.6734 2.2711 -1.9758 37 1 4.1700 5.5301 -1.2874 38 1 5.2059 4.9283 0.0290 39 1 5.6083 3.1853 -3.7080 40 1 4.4645 4.5935 -3.6015 41 1 7.5396 4.6612 -4.0304 42 1 6.3033 5.8508 -4.6305 43 1 7.7055 8.5251 -4.6108 44 1 6.2357 0.8093 -0.0046 45 1 7.3312 -1.3693 0.0070 46 1 6.0078 -3.4406 0.0179 47 1 3.5747 -3.3687 0.0179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085958815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:34 Heat of formation + Delta-G solvation = 66.074438 kcal Electronic energy + Delta-G solvation = -29280.058404 eV Core-core repulsion = 25429.155835 eV Total energy + Delta-G solvation = -3850.902569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30472 -40.82088 -39.49936 -38.40179 -36.60429 -34.67152 -34.17940 -32.98246 -31.39567 -29.92132 -29.85948 -28.68971 -27.79192 -25.54560 -25.32874 -24.50667 -23.56887 -23.18157 -21.04078 -20.36131 -19.19536 -18.75622 -18.57329 -18.05496 -17.26744 -17.11196 -16.61333 -16.39954 -15.95109 -15.73621 -15.68851 -15.40860 -15.00698 -14.90948 -14.57197 -14.27198 -14.08691 -13.94784 -13.88497 -13.71366 -13.49576 -13.29822 -13.02229 -12.91300 -12.58169 -12.56655 -12.44960 -12.35657 -12.30895 -12.25601 -11.83425 -11.66629 -11.58302 -11.39998 -11.33226 -10.85404 -10.48251 -9.78744 -9.69872 -9.29279 -8.92652 -7.90187 -5.25212 -0.89308 -0.26296 0.67222 1.43663 1.45064 1.47526 1.54641 1.76356 1.94947 2.46795 2.99982 3.11233 3.18560 3.28837 3.41855 3.60556 3.61814 3.80931 3.83297 4.06178 4.09866 4.15562 4.21893 4.24310 4.34662 4.39725 4.43534 4.49228 4.60964 4.69920 4.73729 4.81957 4.86105 4.89174 4.90820 4.97409 4.99340 5.01849 5.05160 5.18372 5.20354 5.33742 5.36423 5.45646 5.51993 5.54903 5.67306 5.83469 5.93694 6.22095 6.82444 6.90225 6.91792 7.60013 8.55500 9.25577 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.002802 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.895292 B = 9988.718798 C =10694.478568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.152 3.848 3 C -0.126 4.126 4 C -0.076 4.076 5 C 0.555 3.445 6 O -0.570 6.570 7 N -0.589 5.589 8 C 0.061 3.939 9 C 0.134 3.866 10 C 0.130 3.870 11 H 0.025 0.975 12 C -0.123 4.123 13 C 0.148 3.852 14 N -0.626 5.626 15 C -0.233 4.233 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.950 5.950 19 Si 0.975 3.025 20 H -0.292 1.292 21 H -0.290 1.290 22 H -0.267 1.267 23 C -0.093 4.093 24 C -0.118 4.118 25 C -0.111 4.111 26 C -0.090 4.090 27 C -0.102 4.102 28 C 0.114 3.886 29 N -0.478 5.478 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.008 0.992 42 H 0.053 0.947 43 H 0.249 0.751 44 H 0.112 0.888 45 H 0.148 0.852 46 H 0.168 0.832 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 -21.014 5.575 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.001 4.001 3 C -0.146 4.146 4 C -0.087 4.087 5 C 0.343 3.657 6 O -0.449 6.449 7 N -0.320 5.320 8 C -0.080 4.080 9 C 0.010 3.990 10 C 0.023 3.977 11 H 0.043 0.957 12 C -0.161 4.161 13 C 0.023 3.977 14 N -0.353 5.353 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.255 4.255 18 N -0.599 5.599 19 Si 0.803 3.197 20 H -0.219 1.219 21 H -0.217 1.217 22 H -0.192 1.192 23 C -0.096 4.096 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.007 4.007 29 N -0.188 5.188 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.191 0.809 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.130 0.870 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.998 -21.405 5.959 27.379 hybrid contribution 1.794 2.115 0.300 2.790 sum -14.204 -19.290 6.259 24.759 Atomic orbital electron populations 1.20928 0.85083 1.05379 1.04620 1.22059 0.99053 0.86894 0.92070 1.22650 0.92070 1.01486 0.98424 1.20272 0.95130 0.92022 1.01237 1.18506 0.83073 0.83654 0.80458 1.90780 1.31682 1.81181 1.41293 1.47736 1.28960 1.17002 1.38317 1.22442 0.86429 1.03935 0.95183 1.21429 0.92730 0.85740 0.99132 1.22570 0.93026 0.87400 0.94721 0.95712 1.23528 0.99384 0.98688 0.94495 1.22275 0.94166 0.92134 0.89153 1.46433 1.73793 1.07886 1.07151 1.19346 1.37268 0.87073 0.92408 0.90435 1.25561 1.02482 1.01479 0.96019 1.69995 1.53229 1.32723 1.03959 0.85140 0.77748 0.79376 0.77444 1.21899 1.21672 1.19186 1.18762 0.95145 0.92903 1.02747 1.21175 0.93226 0.99505 0.99761 1.21324 1.01829 0.91746 0.98022 1.21319 0.93423 0.99587 0.96591 1.21112 0.94858 0.96040 1.00013 1.19088 0.89241 0.93140 0.99253 1.67722 1.08358 1.29782 1.12923 0.88845 0.87615 0.89826 0.80855 0.89076 0.89554 0.89808 0.88800 0.92672 0.90814 0.88644 0.97373 0.92841 0.94232 0.86988 0.83457 0.81467 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.14 71.24 0.72 -0.19 16 2 C 0.15 2.68 6.78 42.95 0.29 2.97 16 3 C -0.13 -2.34 7.38 22.68 0.17 -2.17 16 4 C -0.08 -1.99 4.99 -19.68 -0.10 -2.09 16 5 C 0.55 17.64 6.76 86.80 0.59 18.23 16 6 O -0.57 -23.08 14.93 -3.86 -0.06 -23.13 16 7 N -0.59 -16.61 2.75 -850.12 -2.34 -18.95 16 8 C 0.06 1.10 8.73 127.77 1.12 2.22 16 9 C 0.13 4.79 5.36 86.38 0.46 5.25 16 10 C 0.13 5.44 4.58 45.09 0.21 5.65 16 11 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 12 C -0.12 -4.47 7.09 31.25 0.22 -4.25 16 13 C 0.15 7.13 7.63 86.43 0.66 7.79 16 14 N -0.63 -32.46 3.58 -690.87 -2.48 -34.94 16 15 C -0.23 -13.19 10.51 84.03 0.88 -12.31 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 17 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 18 N -0.95 -57.39 11.33 21.65 0.25 -57.14 16 19 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C -0.09 -2.57 5.76 -21.09 -0.12 -2.69 16 24 C -0.12 -3.32 9.21 22.26 0.20 -3.11 16 25 C -0.11 -2.34 9.96 22.07 0.22 -2.12 16 26 C -0.09 -1.48 9.94 22.03 0.22 -1.26 16 27 C -0.10 -1.94 9.98 22.37 0.22 -1.72 16 28 C 0.11 2.78 6.61 40.33 0.27 3.05 16 29 N -0.48 -10.65 10.19 -176.84 -1.80 -12.46 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.40 8.07 -2.38 -0.02 0.38 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.17 2.10 6.36 -2.91 -0.02 2.08 16 34 H 0.09 1.09 7.31 -2.39 -0.02 1.07 16 35 H 0.09 1.56 6.08 -2.39 -0.01 1.54 16 36 H 0.08 1.33 5.94 -2.39 -0.01 1.32 16 37 H 0.09 3.27 8.05 -2.39 -0.02 3.25 16 38 H 0.05 2.24 7.44 -2.39 -0.02 2.22 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.10 3.07 6.49 -2.38 -0.02 3.06 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.05 2.83 6.99 -2.39 -0.02 2.81 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 44 H 0.11 3.73 6.25 -2.91 -0.02 3.71 16 45 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.17 1.47 8.06 -2.92 -0.02 1.45 16 47 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -78.09 380.60 3.28 -74.81 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.99 Total: 13.45 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.70 Total: 10.13 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.37 Total: -123.49 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -78.09 3.28 -74.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.884 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds