Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39432 * 119.54512 * 2 1 4 4 C 1.36000 * 121.08326 * 180.02562 * 3 2 1 5 5 C 1.40819 * 119.74026 * 0.04193 * 4 3 2 6 6 N 1.33267 * 120.99804 * 179.97438 * 5 4 3 7 7 C 1.31883 * 121.30326 * 180.02562 * 6 5 4 8 8 C 1.48270 * 119.24357 * 179.97438 * 7 6 5 9 9 O 1.21493 * 120.00195 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99669 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00180 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47405 * 179.97438 * 11 10 8 13 13 H 1.08999 * 112.84276 * 43.80956 * 12 11 10 14 14 C 1.53779 * 113.61286 * 174.99944 * 12 11 10 15 15 C 1.53791 * 87.07819 * 140.07059 * 14 12 11 16 16 H 1.08997 * 113.60847 * 89.19914 * 15 14 12 17 17 N 1.46500 * 113.61199 * 220.01993 * 15 14 12 18 18 C 1.36935 * 119.99795 * 204.99621 * 17 15 14 19 19 H 1.08006 * 119.99956 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00104 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99934 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99927 * 22 20 18 26 26 C 1.53771 * 113.69613 * 272.54176 * 12 11 10 27 27 C 1.40275 * 121.51987 * 0.26860 * 7 6 5 28 28 C 1.36510 * 119.81302 * 359.42286 * 27 7 6 29 29 C 1.40753 * 118.24453 * 0.58406 * 28 27 7 30 30 C 1.36133 * 119.53812 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46783 * 269.97824 * 1 2 3 32 32 H 1.09005 * 109.47195 * 29.97231 * 1 2 3 33 33 H 1.08994 * 109.47704 * 149.98108 * 1 2 3 34 34 H 1.07992 * 119.45590 * 0.04560 * 3 2 1 35 35 H 1.08000 * 120.12717 * 180.02562 * 4 3 2 36 36 H 0.96999 * 120.00395 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46660 * 60.00101 * 11 10 8 38 38 H 1.08997 * 109.47315 * 300.00953 * 11 10 8 39 39 H 1.09000 * 113.61366 * 25.52612 * 14 12 11 40 40 H 1.09000 * 113.61846 * 254.61852 * 14 12 11 41 41 H 0.96997 * 120.00022 * 25.00095 * 17 15 14 42 42 H 0.97004 * 120.00335 * 0.02562 * 21 20 18 43 43 H 1.09001 * 113.61986 * 105.45408 * 26 12 11 44 44 H 1.09007 * 113.61470 * 334.55859 * 26 12 11 45 45 H 1.08003 * 120.09421 * 179.72298 * 27 7 6 46 46 H 1.08005 * 120.87813 * 180.26227 * 28 27 7 47 47 H 1.07995 * 120.17948 * 359.95178 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5541 1.2495 -0.0005 5 6 4.2852 0.0460 -0.0020 6 7 5.6178 0.0525 -0.0030 7 6 6.3086 -1.0710 -0.0049 8 6 7.7900 -1.0104 -0.0066 9 8 8.4400 -2.0369 -0.0078 10 7 8.4156 0.1834 -0.0067 11 6 9.8795 0.2433 -0.0078 12 6 10.3301 1.7055 -0.0084 13 1 9.7625 2.3234 0.6873 14 6 11.8530 1.8807 0.1133 15 6 11.7254 3.0160 -0.9163 16 1 11.5407 3.9925 -0.4686 17 7 12.8082 3.0379 -1.9028 18 6 13.1361 4.2082 -2.5337 19 1 12.5967 5.1152 -2.3036 20 6 14.1616 4.2289 -3.4689 21 7 14.8186 3.1236 -3.7496 22 14 14.6094 5.8255 -4.3289 23 1 13.7269 6.9154 -3.8403 24 1 14.4318 5.6651 -5.7945 25 1 16.0250 6.1655 -4.0362 26 6 10.4514 2.3142 -1.4152 27 6 5.6740 -2.3220 -0.0114 28 6 4.3107 -2.3915 -0.0041 29 6 3.5823 -1.1871 -0.0027 30 6 2.1781 -1.1844 -0.0005 31 1 -0.3633 -0.0004 1.0278 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5141 34 1 1.6384 2.1387 0.0007 35 1 4.0709 2.1978 -0.0001 36 1 7.8968 1.0029 -0.0053 37 1 10.2628 -0.2550 -0.8983 38 1 10.2642 -0.2556 0.8816 39 1 12.4214 1.0243 -0.2494 40 1 12.1764 2.2184 1.0979 41 1 13.2928 2.2234 -2.1092 42 1 14.5859 2.2943 -3.3033 43 1 9.6432 3.0018 -1.6648 44 1 10.6365 1.5762 -2.1959 45 1 6.2624 -3.2276 -0.0174 46 1 3.8043 -3.3455 -0.0048 47 1 1.6336 -2.1170 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086144306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = 42.338823 kcal Electronic energy + Delta-G solvation = -27251.608836 eV Core-core repulsion = 23399.677014 eV Total energy + Delta-G solvation = -3851.931822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41748 -39.80033 -38.59431 -37.59355 -34.90980 -34.03388 -33.53396 -32.56377 -30.70508 -30.10628 -28.36833 -26.89073 -25.14398 -24.72320 -23.88686 -23.35363 -22.52035 -21.27247 -20.90734 -19.21614 -18.48344 -18.09723 -17.24585 -17.23536 -16.04831 -15.85558 -15.66358 -15.04623 -14.96409 -14.80282 -14.67254 -14.51450 -14.10720 -13.90753 -13.72969 -13.54419 -13.42089 -13.41178 -13.12906 -12.84714 -12.02283 -11.97649 -11.91095 -11.89317 -11.68746 -11.52142 -11.03695 -10.96263 -10.73255 -10.57821 -10.31748 -10.21999 -10.02432 -9.89297 -9.78973 -9.21332 -9.11393 -9.02320 -8.85336 -8.65156 -7.01673 -6.10068 -3.09730 -0.22747 0.25226 1.49396 2.06541 2.92312 2.95058 3.52287 3.59085 3.67841 3.68421 3.71963 4.07673 4.23956 4.26627 4.46750 4.54253 4.65645 4.67574 4.81396 4.92905 4.95328 4.98847 5.01760 5.07168 5.18214 5.29861 5.35385 5.45698 5.49904 5.50763 5.57756 5.63590 5.76825 5.77924 5.83354 5.89002 5.93897 6.00521 6.03982 6.20918 6.23870 6.29543 6.34063 6.40508 6.55475 6.75644 7.05176 7.18910 7.49782 7.82932 8.04491 8.76080 9.23369 10.09722 10.24941 11.38327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.001849 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.917042 B =15137.906551 C =16265.286215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.103 4.103 4 C -0.080 4.080 5 C 0.120 3.880 6 N -0.441 5.441 7 C 0.118 3.882 8 C 0.565 3.435 9 O -0.533 6.533 10 N -0.701 5.701 11 C 0.130 3.870 12 C -0.126 4.126 13 H 0.090 0.910 14 C -0.143 4.143 15 C 0.171 3.829 16 H 0.077 0.923 17 N -0.725 5.725 18 C -0.335 4.335 19 H 0.066 0.934 20 C -0.046 4.046 21 N -0.944 5.944 22 Si 1.086 2.914 23 H -0.295 1.295 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.160 4.160 27 C -0.123 4.123 28 C -0.065 4.065 29 C -0.082 4.082 30 C -0.106 4.106 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.411 0.589 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.368 0.632 42 H 0.256 0.744 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.138 -9.262 11.437 34.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.074 4.074 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.004 4.004 6 N -0.152 5.152 7 C -0.036 4.036 8 C 0.349 3.651 9 O -0.409 6.409 10 N -0.352 5.352 11 C 0.007 3.993 12 C -0.145 4.145 13 H 0.108 0.892 14 C -0.183 4.183 15 C 0.059 3.941 16 H 0.095 0.905 17 N -0.364 5.364 18 C -0.466 4.466 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.589 5.589 22 Si 0.917 3.083 23 H -0.221 1.221 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.201 4.201 27 C -0.143 4.143 28 C -0.091 4.091 29 C -0.084 4.084 30 C -0.125 4.125 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -29.296 -8.189 10.332 32.126 hybrid contribution -1.652 -1.390 1.060 2.405 sum -30.948 -9.578 11.392 34.341 Atomic orbital electron populations 1.20878 0.90586 1.03275 1.02743 1.19790 0.96663 0.92971 0.97952 1.20857 0.93969 0.97964 0.99471 1.20904 0.93590 0.96981 0.98332 1.18831 0.88812 0.93022 0.99747 1.67809 1.07584 1.29836 1.10016 1.21382 0.94378 0.89610 0.98254 1.17907 0.85658 0.84206 0.77369 1.90791 1.65941 1.33976 1.50219 1.45916 1.08247 1.08418 1.72623 1.21529 0.78137 0.97288 1.02351 1.22630 0.97883 0.94065 0.99965 0.89161 1.23461 0.93461 1.00878 1.00491 1.21465 0.88021 0.95220 0.89384 0.90516 1.42424 1.38424 1.09288 1.46242 1.20172 1.17276 0.88638 1.20536 0.91592 1.25795 0.95418 1.04697 0.98439 1.70814 1.43134 0.99646 1.45351 0.83147 0.75647 0.73573 0.75946 1.22112 1.22027 1.21999 1.23931 1.01229 1.00366 0.94608 1.21763 0.95128 0.98926 0.98528 1.21461 0.93673 0.97849 0.96079 1.18953 0.94867 0.93973 1.00637 1.20846 0.92076 0.98410 1.01150 0.90710 0.91082 0.91213 0.84964 0.84163 0.75284 0.90960 0.91368 0.90252 0.91866 0.79831 0.93285 0.92591 0.90504 0.83094 0.83632 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 9.98 36.01 0.36 -0.05 16 2 C -0.07 -0.45 5.85 -104.93 -0.61 -1.06 16 3 C -0.10 -0.66 9.58 -39.94 -0.38 -1.04 16 4 C -0.08 -0.67 9.99 -39.41 -0.39 -1.06 16 5 C 0.12 1.25 6.61 -84.85 -0.56 0.69 16 6 N -0.44 -5.21 9.47 -7.54 -0.07 -5.28 16 7 C 0.12 1.44 6.75 -82.95 -0.56 0.88 16 8 C 0.56 7.94 7.81 -12.13 -0.09 7.84 16 9 O -0.53 -8.87 16.28 5.37 0.09 -8.78 16 10 N -0.70 -9.10 5.54 -61.11 -0.34 -9.44 16 11 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 12 C -0.13 -1.76 3.75 -89.81 -0.34 -2.09 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.14 -2.31 7.39 -25.91 -0.19 -2.51 16 15 C 0.17 3.40 4.48 -67.11 -0.30 3.10 16 16 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 17 N -0.72 -18.32 5.40 -52.63 -0.28 -18.60 16 18 C -0.34 -9.52 9.97 -15.06 -0.15 -9.67 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 21 N -0.94 -29.56 13.70 55.49 0.76 -28.80 16 22 Si 1.09 26.28 29.92 -169.99 -5.09 21.20 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C -0.16 -2.75 7.43 -25.92 -0.19 -2.94 16 27 C -0.12 -1.24 9.54 -39.44 -0.38 -1.62 16 28 C -0.06 -0.52 9.88 -39.26 -0.39 -0.91 16 29 C -0.08 -0.73 5.75 -106.71 -0.61 -1.35 16 30 C -0.11 -0.71 9.37 -39.52 -0.37 -1.08 16 31 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.41 4.83 7.78 -40.82 -0.32 4.51 16 37 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.32 8.08 -51.93 -0.42 0.91 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.37 9.61 6.76 -40.82 -0.28 9.34 16 42 H 0.26 7.89 6.78 -40.82 -0.28 7.61 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 45 H 0.15 1.41 7.60 -52.48 -0.40 1.01 16 46 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -34.51 394.52 -11.05 -45.56 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.78 Total: 10.75 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -5.28 Total: -12.55 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.07 Total: -62.12 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.51 -11.05 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086144306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.900 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds