Wall clock time and date at job start Tue Mar 31 2020 22:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39046 * 121.01910 * 2 1 4 4 C 1.47765 * 120.26538 * 359.97438 * 3 2 1 5 5 O 1.21561 * 119.99827 * 354.18839 * 4 3 2 6 6 N 1.34778 * 120.00179 * 174.19106 * 4 3 2 7 7 C 1.46495 * 120.00351 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47259 * 180.02562 * 7 6 4 9 9 H 1.09003 * 112.85343 * 43.79976 * 8 7 6 10 10 C 1.53779 * 113.61596 * 175.00043 * 8 7 6 11 11 C 1.53782 * 87.08322 * 139.97797 * 10 8 7 12 12 H 1.09004 * 113.61355 * 89.20148 * 11 10 8 13 13 N 1.46500 * 113.61534 * 220.01669 * 11 10 8 14 14 C 1.36939 * 120.00110 * 205.00002 * 13 11 10 15 15 H 1.08006 * 119.99596 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99936 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46823 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46837 * 119.99758 * 18 16 14 21 21 H 1.48498 * 109.46830 * 239.99880 * 18 16 14 22 22 C 1.53782 * 87.08047 * 334.56741 * 11 10 8 23 23 C 1.40557 * 119.46723 * 180.25380 * 3 2 1 24 24 N 1.30823 * 121.53760 * 359.40287 * 23 3 2 25 25 C 1.33798 * 121.71560 * 0.63461 * 24 23 3 26 26 C 1.40532 * 120.82234 * 179.68006 * 25 24 23 27 27 C 1.36127 * 119.81311 * 179.97438 * 26 25 24 28 28 C 1.39348 * 121.09534 * 0.02562 * 27 26 25 29 29 C 1.36134 * 120.83730 * 359.94130 * 28 27 26 30 30 C 1.40491 * 121.02113 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47385 * 83.64621 * 1 2 3 32 32 H 1.09000 * 109.47232 * 203.65066 * 1 2 3 33 33 H 1.09000 * 109.47367 * 323.64668 * 1 2 3 34 34 H 0.97005 * 119.99537 * 359.97438 * 6 4 3 35 35 H 1.08993 * 109.46940 * 59.99696 * 7 6 4 36 36 H 1.09003 * 109.46885 * 300.00001 * 7 6 4 37 37 H 1.09005 * 113.61296 * 254.52379 * 10 8 7 38 38 H 1.08997 * 113.61670 * 25.34573 * 10 8 7 39 39 H 0.97000 * 120.00067 * 25.00471 * 13 11 10 40 40 H 0.97004 * 119.99421 * 179.97438 * 17 16 14 41 41 H 1.08994 * 113.61261 * 270.87940 * 22 11 10 42 42 H 1.09005 * 113.61224 * 139.98132 * 22 11 10 43 43 H 1.07994 * 119.23025 * 179.72531 * 23 3 2 44 44 H 1.08001 * 120.09373 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.45534 * 180.02562 * 27 26 25 46 46 H 1.08003 * 119.58100 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.19430 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5136 2.4875 -0.0006 5 8 0.3031 2.5173 -0.1076 6 7 2.2081 3.6365 0.1176 7 6 1.5044 4.9213 0.1164 8 6 2.5179 6.0581 0.2620 9 1 3.3995 5.9221 -0.3643 10 6 1.8929 7.4587 0.1501 11 6 2.8323 7.8832 1.2913 12 1 3.8002 8.2479 0.9473 13 7 2.2030 8.7749 2.2685 14 6 2.9737 9.6267 3.0141 15 1 4.0455 9.6413 2.8812 16 6 2.3775 10.4712 3.9404 17 7 1.0713 10.4537 4.1017 18 14 3.4289 11.6326 4.9579 19 1 4.8568 11.4588 4.5893 20 1 3.0159 13.0342 4.6934 21 1 3.2496 11.3275 6.4001 22 6 2.8461 6.4073 1.7233 23 6 3.6286 1.1536 -0.0054 24 7 4.2824 0.0205 0.0011 25 6 3.6482 -1.1576 0.0007 26 6 4.3695 -2.3637 0.0011 27 6 3.7032 -3.5508 0.0011 28 6 2.3104 -3.5943 0.0003 29 6 1.5764 -2.4478 0.0006 30 6 2.2310 -1.2040 0.0005 31 1 -0.3634 0.1137 -1.0213 32 1 -0.3634 -0.9413 0.4123 33 1 -0.3634 0.8276 0.6092 34 1 3.1741 3.6126 0.2033 35 1 0.8018 4.9515 0.9492 36 1 0.9612 5.0372 -0.8215 37 1 2.1034 7.9564 -0.7966 38 1 0.8369 7.4884 0.4183 39 1 1.2405 8.7620 2.3876 40 1 0.6548 11.0436 4.7494 41 1 2.0510 6.1498 2.4230 42 1 3.8261 6.0562 2.0467 43 1 4.1812 2.0814 -0.0099 44 1 5.4494 -2.3489 0.0013 45 1 4.2633 -4.4742 0.0019 46 1 1.8069 -4.5498 0.0000 47 1 0.4974 -2.4937 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086150990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:22 Heat of formation + Delta-G solvation = 48.152458 kcal Electronic energy + Delta-G solvation = -27572.765743 eV Core-core repulsion = 23721.086019 eV Total energy + Delta-G solvation = -3851.679724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.48096 -39.79582 -38.52320 -37.26580 -35.25967 -34.50093 -33.35136 -31.36117 -30.73503 -30.21068 -28.52724 -27.15114 -25.10865 -24.63576 -24.31487 -23.69334 -21.53557 -21.24258 -20.98748 -19.24384 -18.52428 -18.15007 -17.35879 -17.04083 -16.12295 -15.94087 -15.63448 -15.03943 -14.88319 -14.81023 -14.61568 -14.49826 -14.25956 -13.83834 -13.53458 -13.48536 -13.15234 -13.09870 -12.92297 -12.41893 -12.20573 -12.18528 -11.95303 -11.88973 -11.82318 -11.41657 -11.24249 -10.86329 -10.56117 -10.52866 -10.31519 -10.14847 -10.07125 -9.84294 -9.64808 -9.49730 -9.28589 -9.07098 -8.88363 -8.62126 -6.97244 -5.79401 -3.08200 -0.15277 0.21682 1.46100 2.20449 2.94328 3.00830 3.41887 3.47546 3.49839 3.69857 3.79195 4.08162 4.24840 4.28761 4.39492 4.54342 4.57454 4.67198 4.79414 4.93572 4.96098 4.99695 5.05908 5.20597 5.27526 5.38900 5.45375 5.47127 5.48698 5.56174 5.61892 5.78400 5.80117 5.81799 5.90676 5.94320 6.04305 6.07929 6.10237 6.23310 6.29462 6.34139 6.36494 6.41351 6.58079 6.80859 7.09794 7.33414 7.46354 7.68780 8.02911 8.39206 9.50389 10.08638 10.42679 11.43010 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001800 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.978986 B =15552.618643 C =16018.721450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.049 3.951 3 C -0.204 4.204 4 C 0.561 3.439 5 O -0.532 6.532 6 N -0.718 5.718 7 C 0.133 3.867 8 C -0.128 4.128 9 H 0.089 0.911 10 C -0.142 4.142 11 C 0.166 3.834 12 H 0.076 0.924 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.161 4.161 23 C 0.168 3.832 24 N -0.482 5.482 25 C 0.145 3.855 26 C -0.099 4.099 27 C -0.091 4.091 28 C -0.123 4.123 29 C -0.086 4.086 30 C -0.114 4.114 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.162 0.838 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -29.297 -11.958 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.041 3.959 3 C -0.209 4.209 4 C 0.348 3.652 5 O -0.411 6.411 6 N -0.369 5.369 7 C 0.010 3.990 8 C -0.148 4.148 9 H 0.107 0.893 10 C -0.181 4.181 11 C 0.053 3.947 12 H 0.094 0.906 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.202 4.202 23 C -0.006 4.006 24 N -0.189 5.189 25 C 0.024 3.976 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.141 4.141 29 C -0.104 4.104 30 C -0.116 4.116 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.179 0.821 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.148 0.852 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.275 -29.204 -11.921 31.713 hybrid contribution -0.081 0.633 0.709 0.954 sum 3.194 -28.570 -11.212 30.857 Atomic orbital electron populations 1.21211 0.88641 1.04018 1.04535 1.20691 0.97346 0.90503 0.87387 1.20809 0.95145 0.94311 1.10669 1.17927 0.86946 0.83396 0.76913 1.90736 1.13448 1.87068 1.49815 1.45980 1.10912 1.06086 1.73933 1.21491 0.94893 0.80379 1.02249 1.22656 0.98316 0.94072 0.99722 0.89288 1.23446 1.00777 0.93679 1.00248 1.21523 0.95349 0.88593 0.89197 0.90638 1.42420 1.06880 1.43180 1.42580 1.19354 0.90979 1.13130 1.14027 0.91025 1.24774 0.95739 1.00287 1.00176 1.69673 1.08154 1.41755 1.38399 0.86119 0.79313 0.80738 0.80029 1.20525 1.21844 1.21871 1.23959 1.00973 1.01461 0.93848 1.23026 0.90114 0.96628 0.90852 1.67956 1.39481 0.97475 1.14028 1.19012 0.89598 0.92625 0.96369 1.20846 1.00623 0.90068 1.00259 1.21006 0.94541 0.98093 0.97489 1.20961 0.94124 0.98636 1.00359 1.21134 1.00423 0.90996 0.97897 1.18730 0.94003 0.94093 1.04813 0.89397 0.91514 0.87527 0.76566 0.90941 0.91476 0.91973 0.90085 0.78071 0.93505 0.90319 0.92722 0.82099 0.84427 0.85055 0.85236 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.49 36.01 0.31 -0.88 16 2 C 0.05 0.52 5.99 -103.48 -0.62 -0.10 16 3 C -0.20 -2.23 5.89 -104.83 -0.62 -2.85 16 4 C 0.56 6.89 7.72 -12.37 -0.10 6.80 16 5 O -0.53 -7.91 13.44 5.31 0.07 -7.84 16 6 N -0.72 -7.76 5.51 -61.28 -0.34 -8.09 16 7 C 0.13 1.64 5.51 -4.05 -0.02 1.62 16 8 C -0.13 -1.63 3.75 -89.81 -0.34 -1.97 16 9 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 10 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 11 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 12 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 13 N -0.71 -17.59 5.40 -52.63 -0.28 -17.87 16 14 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 C -0.16 -2.58 7.43 -25.92 -0.19 -2.77 16 23 C 0.17 1.67 10.67 -17.11 -0.18 1.49 16 24 N -0.48 -5.37 10.30 -10.68 -0.11 -5.48 16 25 C 0.14 1.52 6.61 -84.79 -0.56 0.96 16 26 C -0.10 -0.81 9.97 -39.48 -0.39 -1.21 16 27 C -0.09 -0.56 9.94 -39.93 -0.40 -0.96 16 28 C -0.12 -0.73 9.96 -39.93 -0.40 -1.13 16 29 C -0.09 -0.63 9.32 -39.46 -0.37 -1.00 16 30 C -0.11 -1.13 5.74 -106.82 -0.61 -1.74 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.45 6.21 -51.93 -0.32 0.13 16 33 H 0.11 1.20 5.92 -51.93 -0.31 0.89 16 34 H 0.40 3.35 6.54 -40.82 -0.27 3.08 16 35 H 0.07 1.02 7.84 -51.93 -0.41 0.62 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 39 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.16 1.14 6.42 -52.49 -0.34 0.80 16 44 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 46 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 47 H 0.14 0.72 6.30 -52.48 -0.33 0.39 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -33.25 385.17 -10.86 -44.11 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.47 Total: 10.11 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -5.23 Total: -10.63 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.01 Total: -58.80 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.07 Total: -7.84 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.25 -10.86 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.261 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds