Wall clock time and date at job start Tue Mar 31 2020 22:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39046 * 121.01910 * 2 1 4 4 C 1.47765 * 120.26538 * 359.97438 * 3 2 1 5 5 O 1.21561 * 119.99827 * 354.18839 * 4 3 2 6 6 N 1.34778 * 120.00179 * 174.19106 * 4 3 2 7 7 C 1.46495 * 120.00351 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47259 * 180.02562 * 7 6 4 9 9 H 1.09003 * 112.85343 * 43.79976 * 8 7 6 10 10 C 1.53779 * 113.61596 * 175.00043 * 8 7 6 11 11 C 1.53782 * 87.08322 * 139.97797 * 10 8 7 12 12 H 1.09004 * 113.61355 * 89.20148 * 11 10 8 13 13 N 1.46500 * 113.61534 * 220.01669 * 11 10 8 14 14 C 1.36939 * 120.00110 * 205.00002 * 13 11 10 15 15 H 1.08006 * 119.99596 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99936 * 180.02562 * 14 13 11 17 17 N 1.31618 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46823 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46837 * 119.99758 * 18 16 14 21 21 H 1.48498 * 109.46830 * 239.99880 * 18 16 14 22 22 C 1.53782 * 87.08047 * 334.56741 * 11 10 8 23 23 C 1.40557 * 119.46723 * 180.25380 * 3 2 1 24 24 N 1.30823 * 121.53760 * 359.40287 * 23 3 2 25 25 C 1.33798 * 121.71560 * 0.63461 * 24 23 3 26 26 C 1.40532 * 120.82234 * 179.68006 * 25 24 23 27 27 C 1.36127 * 119.81311 * 179.97438 * 26 25 24 28 28 C 1.39348 * 121.09534 * 0.02562 * 27 26 25 29 29 C 1.36134 * 120.83730 * 359.94130 * 28 27 26 30 30 C 1.40491 * 121.02113 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47385 * 83.64621 * 1 2 3 32 32 H 1.09000 * 109.47232 * 203.65066 * 1 2 3 33 33 H 1.09000 * 109.47367 * 323.64668 * 1 2 3 34 34 H 0.97005 * 119.99537 * 359.97438 * 6 4 3 35 35 H 1.08993 * 109.46940 * 59.99696 * 7 6 4 36 36 H 1.09003 * 109.46885 * 300.00001 * 7 6 4 37 37 H 1.09005 * 113.61296 * 254.52379 * 10 8 7 38 38 H 1.08997 * 113.61670 * 25.34573 * 10 8 7 39 39 H 0.97000 * 120.00067 * 25.00471 * 13 11 10 40 40 H 0.97004 * 119.99421 * 179.97438 * 17 16 14 41 41 H 1.08994 * 113.61261 * 270.87940 * 22 11 10 42 42 H 1.09005 * 113.61224 * 139.98132 * 22 11 10 43 43 H 1.07994 * 119.23025 * 179.72531 * 23 3 2 44 44 H 1.08001 * 120.09373 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.45534 * 180.02562 * 27 26 25 46 46 H 1.08003 * 119.58100 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.19430 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5136 2.4875 -0.0006 5 8 0.3031 2.5173 -0.1076 6 7 2.2081 3.6365 0.1176 7 6 1.5044 4.9213 0.1164 8 6 2.5179 6.0581 0.2620 9 1 3.3995 5.9221 -0.3643 10 6 1.8929 7.4587 0.1501 11 6 2.8323 7.8832 1.2913 12 1 3.8002 8.2479 0.9473 13 7 2.2030 8.7749 2.2685 14 6 2.9737 9.6267 3.0141 15 1 4.0455 9.6413 2.8812 16 6 2.3775 10.4712 3.9404 17 7 1.0713 10.4537 4.1017 18 14 3.4289 11.6326 4.9579 19 1 4.8568 11.4588 4.5893 20 1 3.0159 13.0342 4.6934 21 1 3.2496 11.3275 6.4001 22 6 2.8461 6.4073 1.7233 23 6 3.6286 1.1536 -0.0054 24 7 4.2824 0.0205 0.0011 25 6 3.6482 -1.1576 0.0007 26 6 4.3695 -2.3637 0.0011 27 6 3.7032 -3.5508 0.0011 28 6 2.3104 -3.5943 0.0003 29 6 1.5764 -2.4478 0.0006 30 6 2.2310 -1.2040 0.0005 31 1 -0.3634 0.1137 -1.0213 32 1 -0.3634 -0.9413 0.4123 33 1 -0.3634 0.8276 0.6092 34 1 3.1741 3.6126 0.2033 35 1 0.8018 4.9515 0.9492 36 1 0.9612 5.0372 -0.8215 37 1 2.1034 7.9564 -0.7966 38 1 0.8369 7.4884 0.4183 39 1 1.2405 8.7620 2.3876 40 1 0.6548 11.0436 4.7494 41 1 2.0510 6.1498 2.4230 42 1 3.8261 6.0562 2.0467 43 1 4.1812 2.0814 -0.0099 44 1 5.4494 -2.3489 0.0013 45 1 4.2633 -4.4742 0.0019 46 1 1.8069 -4.5498 0.0000 47 1 0.4974 -2.4937 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086150990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:21 Heat of formation + Delta-G solvation = 27.238409 kcal Electronic energy + Delta-G solvation = -27573.672644 eV Core-core repulsion = 23721.086019 eV Total energy + Delta-G solvation = -3852.586625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.19013 -40.74767 -39.77580 -37.91190 -36.29123 -35.50605 -35.00857 -32.42899 -31.74155 -31.31580 -29.39509 -28.24337 -26.43837 -25.96260 -25.13066 -24.83415 -22.52418 -22.26173 -21.87032 -20.57201 -19.42037 -18.97685 -18.82659 -18.09886 -17.03319 -16.84016 -16.62501 -16.42451 -16.10588 -15.63115 -15.49057 -15.39536 -15.20589 -15.01708 -14.82324 -14.53748 -14.38428 -13.90628 -13.82467 -13.41065 -13.22044 -13.17880 -13.02851 -12.91338 -12.78389 -12.74528 -12.64863 -12.43300 -12.15111 -12.05173 -11.56994 -11.53490 -11.25815 -11.09714 -10.97546 -10.81305 -10.45920 -10.14934 -9.83618 -9.25130 -8.96631 -7.94379 -5.22340 -0.83030 -0.43612 0.81166 1.47491 1.48020 1.49719 1.58103 2.05088 2.20460 2.56904 3.02637 3.15177 3.37744 3.44286 3.54823 3.56990 3.72911 3.76226 3.78477 3.90191 3.96687 4.18954 4.27569 4.29464 4.36912 4.40396 4.42455 4.45041 4.56457 4.58962 4.67569 4.78337 4.91590 4.96655 4.98938 5.00635 5.03607 5.06752 5.16686 5.25050 5.35299 5.39614 5.41826 5.43844 5.49363 5.54254 5.74833 5.83639 6.28365 6.46106 6.75548 7.12635 7.33787 8.12699 8.33979 9.29329 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.001800 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.978986 B =15552.618643 C =16018.721450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.041 3.959 3 C -0.221 4.221 4 C 0.562 3.438 5 O -0.564 6.564 6 N -0.708 5.708 7 C 0.140 3.860 8 C -0.096 4.096 9 H 0.123 0.877 10 C -0.135 4.135 11 C 0.142 3.858 12 H 0.081 0.919 13 N -0.730 5.730 14 C -0.240 4.240 15 H 0.079 0.921 16 C -0.081 4.081 17 N -0.972 5.972 18 Si 0.972 3.028 19 H -0.264 1.264 20 H -0.294 1.294 21 H -0.296 1.296 22 C -0.154 4.154 23 C 0.164 3.836 24 N -0.501 5.501 25 C 0.120 3.880 26 C -0.120 4.120 27 C -0.078 4.078 28 C -0.116 4.116 29 C -0.095 4.095 30 C -0.130 4.130 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.185 0.815 44 H 0.144 0.856 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 -31.926 -13.034 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 C -0.226 4.226 4 C 0.350 3.650 5 O -0.445 6.445 6 N -0.360 5.360 7 C 0.016 3.984 8 C -0.115 4.115 9 H 0.141 0.859 10 C -0.175 4.175 11 C 0.032 3.968 12 H 0.099 0.901 13 N -0.367 5.367 14 C -0.372 4.372 15 H 0.097 0.903 16 C -0.273 4.273 17 N -0.623 5.623 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.222 1.222 21 H -0.224 1.224 22 C -0.195 4.195 23 C -0.010 4.010 24 N -0.209 5.209 25 C 0.000 4.000 26 C -0.138 4.138 27 C -0.098 4.098 28 C -0.134 4.134 29 C -0.114 4.114 30 C -0.132 4.132 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.202 0.798 44 H 0.162 0.838 45 H 0.182 0.818 46 H 0.181 0.819 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.026 -31.874 -13.037 34.802 hybrid contribution -0.577 1.254 0.983 1.694 sum 4.449 -30.620 -12.053 33.207 Atomic orbital electron populations 1.21147 0.88138 1.04353 1.04208 1.20939 0.97892 0.90911 0.86977 1.20754 0.95670 0.93711 1.12489 1.18153 0.86612 0.84066 0.76219 1.90724 1.14827 1.87557 1.51392 1.45820 1.11543 1.05190 1.73431 1.21277 0.94549 0.80968 1.01571 1.22486 0.98988 0.92565 0.97482 0.85913 1.23317 0.99402 0.95347 0.99412 1.21977 0.96196 0.88931 0.89652 0.90108 1.42642 1.06237 1.44079 1.43775 1.19782 0.91576 1.12517 1.13350 0.90263 1.25592 0.96893 1.02651 1.02131 1.69833 1.09862 1.43069 1.39537 0.85080 0.78537 0.78270 0.77940 1.18772 1.22177 1.22368 1.23737 1.00968 0.99115 0.95684 1.23328 0.89838 0.97341 0.90474 1.67980 1.40002 0.98059 1.14871 1.19432 0.90328 0.93222 0.96977 1.21070 1.01183 0.90125 1.01463 1.21442 0.94976 0.98548 0.94831 1.21404 0.94171 0.99533 0.98278 1.21425 1.01582 0.90494 0.97868 1.18920 0.93963 0.94817 1.05499 0.89401 0.89070 0.89805 0.74960 0.93128 0.91104 0.90246 0.91402 0.79654 0.94158 0.92609 0.91432 0.79849 0.83783 0.81845 0.81947 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.49 71.24 0.60 -1.65 16 2 C 0.04 0.86 5.99 -19.12 -0.11 0.75 16 3 C -0.22 -4.84 5.89 -20.00 -0.12 -4.96 16 4 C 0.56 13.81 7.72 86.76 0.67 14.48 16 5 O -0.56 -17.22 13.44 -3.91 -0.05 -17.27 16 6 N -0.71 -14.58 5.51 -466.08 -2.57 -17.15 16 7 C 0.14 3.33 5.51 86.38 0.48 3.81 16 8 C -0.10 -2.25 3.75 -10.27 -0.04 -2.29 16 9 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 10 C -0.14 -4.01 7.39 31.12 0.23 -3.78 16 11 C 0.14 5.27 4.48 45.52 0.20 5.47 16 12 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 13 N -0.73 -36.60 5.40 -320.43 -1.73 -38.33 16 14 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 17 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 18 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 C -0.15 -4.80 7.43 31.12 0.23 -4.57 16 23 C 0.16 3.19 10.67 85.41 0.91 4.10 16 24 N -0.50 -11.00 10.30 -187.70 -1.93 -12.94 16 25 C 0.12 2.46 6.61 40.28 0.27 2.72 16 26 C -0.12 -1.78 9.97 22.34 0.22 -1.56 16 27 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 28 C -0.12 -0.99 9.96 22.05 0.22 -0.77 16 29 C -0.10 -1.19 9.32 22.35 0.21 -0.99 16 30 C -0.13 -2.46 5.74 -21.29 -0.12 -2.58 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.14 6.21 -2.39 -0.01 1.12 16 33 H 0.08 1.97 5.92 -2.39 -0.01 1.95 16 34 H 0.41 6.13 6.54 -92.70 -0.61 5.52 16 35 H 0.05 1.45 7.84 -2.39 -0.02 1.44 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.08 16 38 H 0.07 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.37 20.28 7.92 -92.71 -0.73 19.55 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.06 2.01 7.90 -2.39 -0.02 1.99 16 42 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.18 2.37 6.42 -2.91 -0.02 2.35 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 46 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 47 H 0.15 1.24 6.30 -2.91 -0.02 1.22 16 Total: -1.00 -74.68 385.17 1.08 -73.60 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.32 Total: 32.64 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 5.37 Total: -8.95 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.95 Total: -128.38 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.05 Total: -17.27 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.68 1.08 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086150990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.843 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds