Wall clock time and date at job start Tue Mar 31 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39435 * 119.54664 * 2 1 4 4 C 1.35997 * 121.08595 * 180.02562 * 3 2 1 5 5 C 1.40814 * 119.74316 * 359.91681 * 4 3 2 6 6 N 1.33265 * 121.00390 * 180.08461 * 5 4 3 7 7 C 1.31879 * 121.30522 * 179.97438 * 6 5 4 8 8 C 1.48276 * 119.24179 * 179.97438 * 7 6 5 9 9 O 1.21498 * 120.00316 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99666 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.09000 * 112.84840 * 45.33093 * 12 11 10 14 14 C 1.53782 * 113.61310 * 176.53224 * 12 11 10 15 15 C 1.53782 * 87.08171 * 139.98033 * 14 12 11 16 16 H 1.08994 * 113.61158 * 220.01625 * 15 14 12 17 17 N 1.46495 * 113.61488 * 89.11435 * 15 14 12 18 18 C 1.36939 * 119.99850 * 155.00408 * 17 15 14 19 19 H 1.08000 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99996 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46765 * 60.00383 * 22 20 18 24 24 H 1.48501 * 109.46874 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47238 * 299.99834 * 22 20 18 26 26 C 1.53779 * 113.61411 * 274.13435 * 12 11 10 27 27 C 1.40281 * 121.52348 * 0.26574 * 7 6 5 28 28 C 1.36502 * 119.80998 * 359.49146 * 27 7 6 29 29 C 1.40762 * 118.24433 * 0.47029 * 28 27 7 30 30 C 1.36134 * 119.54578 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46923 * 270.01986 * 1 2 3 32 32 H 1.08996 * 109.47387 * 30.01541 * 1 2 3 33 33 H 1.08999 * 109.47743 * 150.02155 * 1 2 3 34 34 H 1.08002 * 119.45445 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.12834 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 38 38 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 39 39 H 1.08999 * 113.60951 * 254.52553 * 14 12 11 40 40 H 1.09001 * 113.61558 * 25.34181 * 14 12 11 41 41 H 0.97001 * 120.00111 * 334.99549 * 17 15 14 42 42 H 0.97006 * 119.99768 * 179.97438 * 21 20 18 43 43 H 1.09005 * 113.61706 * 334.57078 * 26 12 11 44 44 H 1.09002 * 113.61447 * 105.46510 * 26 12 11 45 45 H 1.07998 * 120.09619 * 179.73886 * 27 7 6 46 46 H 1.08003 * 120.88284 * 180.24260 * 28 27 7 47 47 H 1.08001 * 120.17256 * 359.97241 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0461 0.0007 6 7 5.6178 0.0526 0.0019 7 6 6.3085 -1.0708 0.0036 8 6 7.7901 -1.0102 0.0043 9 8 8.4401 -2.0367 0.0053 10 7 8.4156 0.1835 0.0038 11 6 9.8794 0.2435 0.0051 12 6 10.3300 1.7056 0.0048 13 1 9.7791 2.3184 0.7184 14 6 11.8554 1.8802 0.0913 15 6 11.7037 3.0216 -0.9280 16 1 12.4917 3.0423 -1.6807 17 7 11.4681 4.3302 -0.3130 18 6 11.8121 5.4737 -0.9833 19 1 12.2574 5.4108 -1.9652 20 6 11.5893 6.7136 -0.4002 21 7 11.0471 6.7902 0.7966 22 14 12.0592 8.2735 -1.3143 23 1 11.3121 8.3402 -2.5959 24 1 11.7204 9.4559 -0.4823 25 1 13.5180 8.2643 -1.5916 26 6 10.4156 2.3236 -1.4008 27 6 5.6740 -2.3219 -0.0014 28 6 4.3108 -2.3914 0.0024 29 6 3.5824 -1.1869 0.0011 30 6 2.1782 -1.1843 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6383 2.1388 0.0004 35 1 4.0708 2.1979 -0.0009 36 1 7.8967 1.0031 0.0026 37 1 10.2627 -0.2543 0.8958 38 1 10.2643 -0.2559 -0.8841 39 1 12.2020 2.2120 1.0700 40 1 12.4150 1.0253 -0.2884 41 1 11.0684 4.3866 0.5690 42 1 10.8918 7.6567 1.2041 43 1 10.5807 1.5908 -2.1907 44 1 9.6014 3.0128 -1.6251 45 1 6.2624 -3.2276 -0.0042 46 1 3.8043 -3.3454 0.0026 47 1 1.6336 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086424114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:57 Heat of formation + Delta-G solvation = 43.259127 kcal Electronic energy + Delta-G solvation = -27471.251430 eV Core-core repulsion = 23619.359515 eV Total energy + Delta-G solvation = -3851.891915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32972 -39.71431 -38.52875 -37.50979 -34.76695 -33.89822 -33.18064 -32.46924 -30.61536 -30.17738 -28.33974 -26.91060 -25.02869 -24.65303 -23.90802 -23.33696 -22.43471 -21.66773 -20.79147 -18.70124 -18.32253 -17.89395 -17.23074 -17.13493 -15.88951 -15.77176 -15.57576 -14.97694 -14.75171 -14.65601 -14.58470 -14.34609 -14.13475 -13.79135 -13.74973 -13.45894 -13.34579 -13.16640 -12.85217 -12.76477 -12.25478 -11.92066 -11.89245 -11.81815 -11.59747 -11.35735 -11.02730 -10.95305 -10.82306 -10.52894 -10.44898 -10.18902 -9.97015 -9.73251 -9.67067 -9.44138 -9.11796 -8.94386 -8.85883 -8.56238 -6.98422 -5.79154 -3.08058 -0.13676 0.33711 1.58420 2.14826 3.02048 3.03794 3.43448 3.47789 3.48766 3.77680 3.80752 4.16147 4.33134 4.34984 4.54598 4.57031 4.63128 4.74394 4.89937 5.05772 5.09305 5.09711 5.11168 5.15161 5.26290 5.39736 5.43175 5.46977 5.57547 5.65606 5.66519 5.71291 5.73485 5.88025 5.92157 5.97684 6.08938 6.13099 6.13455 6.23975 6.39694 6.40879 6.45310 6.61609 6.78527 6.92359 7.07504 7.29148 7.60079 7.69910 8.12878 8.40057 9.50578 10.08524 10.42767 11.43226 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.002240 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.652513 B =12494.264931 C =14668.045072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.078 4.078 5 C 0.120 3.880 6 N -0.438 5.438 7 C 0.116 3.884 8 C 0.565 3.435 9 O -0.538 6.538 10 N -0.700 5.700 11 C 0.128 3.872 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.147 4.147 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.705 5.705 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.169 4.169 27 C -0.123 4.123 28 C -0.066 4.066 29 C -0.082 4.082 30 C -0.108 4.108 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.413 0.587 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 -19.054 -0.795 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.096 4.096 5 C -0.004 4.004 6 N -0.150 5.150 7 C -0.038 4.038 8 C 0.349 3.651 9 O -0.414 6.414 10 N -0.350 5.350 11 C 0.006 3.994 12 C -0.138 4.138 13 H 0.112 0.888 14 C -0.187 4.187 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.210 4.210 27 C -0.144 4.144 28 C -0.092 4.092 29 C -0.084 4.084 30 C -0.127 4.127 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.250 0.750 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.168 0.832 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.768 -18.727 -0.893 27.244 hybrid contribution -0.676 0.490 -0.127 0.845 sum -20.443 -18.236 -1.021 27.414 Atomic orbital electron populations 1.20873 0.90626 1.03222 1.02739 1.19790 0.96632 0.92989 0.97886 1.20867 0.93986 0.97969 0.99523 1.20953 0.93615 0.97130 0.97928 1.18838 0.88807 0.93015 0.99723 1.67829 1.07602 1.29818 1.09710 1.21388 0.94429 0.89577 0.98392 1.17908 0.85656 0.84200 0.77333 1.90771 1.65981 1.34019 1.50666 1.45952 1.08355 1.08500 1.72212 1.21582 0.78213 0.97706 1.01948 1.22713 0.97850 0.93309 0.99968 0.88797 1.23440 0.93888 0.99854 1.01496 1.21086 0.94261 0.85352 0.93792 0.91945 1.42161 1.73241 0.99215 1.19767 1.19248 1.33880 0.84514 0.99694 0.91053 1.24763 1.01629 0.97663 0.96840 1.69651 1.49161 1.23994 1.15266 0.86246 0.78178 0.82951 0.78680 1.21234 1.21696 1.21209 1.23918 1.02771 0.99826 0.94445 1.21744 0.95099 0.98874 0.98664 1.21444 0.93677 0.97795 0.96271 1.18952 0.94862 0.93966 1.00651 1.20826 0.92069 0.98354 1.01402 0.90712 0.91085 0.91264 0.84929 0.83986 0.75022 0.91512 0.91264 0.91299 0.90433 0.78092 0.93403 0.91427 0.91451 0.83172 0.83708 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.98 36.00 0.36 -0.15 16 2 C -0.07 -0.51 5.85 -104.94 -0.61 -1.13 16 3 C -0.10 -0.80 9.58 -39.94 -0.38 -1.18 16 4 C -0.08 -0.77 9.99 -39.41 -0.39 -1.16 16 5 C 0.12 1.39 6.61 -84.86 -0.56 0.83 16 6 N -0.44 -5.72 9.47 -7.54 -0.07 -5.79 16 7 C 0.12 1.51 6.75 -82.95 -0.56 0.95 16 8 C 0.57 8.25 7.81 -12.13 -0.09 8.16 16 9 O -0.54 -8.97 16.28 5.37 0.09 -8.88 16 10 N -0.70 -9.78 5.54 -61.11 -0.34 -10.12 16 11 C 0.13 1.80 5.50 -4.04 -0.02 1.78 16 12 C -0.12 -1.85 3.62 -89.81 -0.33 -2.17 16 13 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 14 C -0.15 -2.38 7.39 -25.92 -0.19 -2.57 16 15 C 0.17 3.30 4.57 -67.03 -0.31 2.99 16 16 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 17 N -0.71 -17.49 5.31 -52.55 -0.28 -17.77 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.17 -2.88 7.44 -25.83 -0.19 -3.07 16 27 C -0.12 -1.31 9.54 -39.44 -0.38 -1.68 16 28 C -0.07 -0.57 9.88 -39.25 -0.39 -0.96 16 29 C -0.08 -0.80 5.75 -106.71 -0.61 -1.41 16 30 C -0.11 -0.80 9.37 -39.52 -0.37 -1.17 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.41 5.63 7.78 -40.82 -0.32 5.31 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.15 1.44 7.60 -52.49 -0.40 1.05 16 46 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -32.57 396.13 -11.10 -43.67 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.89 Total: 12.15 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -5.28 Total: -9.26 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.04 Total: -60.90 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.57 -11.10 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086424114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.930 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds