Wall clock time and date at job start Tue Mar 31 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39435 * 119.54664 * 2 1 4 4 C 1.35997 * 121.08595 * 180.02562 * 3 2 1 5 5 C 1.40814 * 119.74316 * 359.91681 * 4 3 2 6 6 N 1.33265 * 121.00390 * 180.08461 * 5 4 3 7 7 C 1.31879 * 121.30522 * 179.97438 * 6 5 4 8 8 C 1.48276 * 119.24179 * 179.97438 * 7 6 5 9 9 O 1.21498 * 120.00316 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99666 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00072 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.09000 * 112.84840 * 45.33093 * 12 11 10 14 14 C 1.53782 * 113.61310 * 176.53224 * 12 11 10 15 15 C 1.53782 * 87.08171 * 139.98033 * 14 12 11 16 16 H 1.08994 * 113.61158 * 220.01625 * 15 14 12 17 17 N 1.46495 * 113.61488 * 89.11435 * 15 14 12 18 18 C 1.36939 * 119.99850 * 155.00408 * 17 15 14 19 19 H 1.08000 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99996 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99769 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46765 * 60.00383 * 22 20 18 24 24 H 1.48501 * 109.46874 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47238 * 299.99834 * 22 20 18 26 26 C 1.53779 * 113.61411 * 274.13435 * 12 11 10 27 27 C 1.40281 * 121.52348 * 0.26574 * 7 6 5 28 28 C 1.36502 * 119.80998 * 359.49146 * 27 7 6 29 29 C 1.40762 * 118.24433 * 0.47029 * 28 27 7 30 30 C 1.36134 * 119.54578 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46923 * 270.01986 * 1 2 3 32 32 H 1.08996 * 109.47387 * 30.01541 * 1 2 3 33 33 H 1.08999 * 109.47743 * 150.02155 * 1 2 3 34 34 H 1.08002 * 119.45445 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.12834 * 179.97438 * 4 3 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 38 38 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 39 39 H 1.08999 * 113.60951 * 254.52553 * 14 12 11 40 40 H 1.09001 * 113.61558 * 25.34181 * 14 12 11 41 41 H 0.97001 * 120.00111 * 334.99549 * 17 15 14 42 42 H 0.97006 * 119.99768 * 179.97438 * 21 20 18 43 43 H 1.09005 * 113.61706 * 334.57078 * 26 12 11 44 44 H 1.09002 * 113.61447 * 105.46510 * 26 12 11 45 45 H 1.07998 * 120.09619 * 179.73886 * 27 7 6 46 46 H 1.08003 * 120.88284 * 180.24260 * 28 27 7 47 47 H 1.08001 * 120.17256 * 359.97241 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0461 0.0007 6 7 5.6178 0.0526 0.0019 7 6 6.3085 -1.0708 0.0036 8 6 7.7901 -1.0102 0.0043 9 8 8.4401 -2.0367 0.0053 10 7 8.4156 0.1835 0.0038 11 6 9.8794 0.2435 0.0051 12 6 10.3300 1.7056 0.0048 13 1 9.7791 2.3184 0.7184 14 6 11.8554 1.8802 0.0913 15 6 11.7037 3.0216 -0.9280 16 1 12.4917 3.0423 -1.6807 17 7 11.4681 4.3302 -0.3130 18 6 11.8121 5.4737 -0.9833 19 1 12.2574 5.4108 -1.9652 20 6 11.5893 6.7136 -0.4002 21 7 11.0471 6.7902 0.7966 22 14 12.0592 8.2735 -1.3143 23 1 11.3121 8.3402 -2.5959 24 1 11.7204 9.4559 -0.4823 25 1 13.5180 8.2643 -1.5916 26 6 10.4156 2.3236 -1.4008 27 6 5.6740 -2.3219 -0.0014 28 6 4.3108 -2.3914 0.0024 29 6 3.5824 -1.1869 0.0011 30 6 2.1782 -1.1843 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6383 2.1388 0.0004 35 1 4.0708 2.1979 -0.0009 36 1 7.8967 1.0031 0.0026 37 1 10.2627 -0.2543 0.8958 38 1 10.2643 -0.2559 -0.8841 39 1 12.2020 2.2120 1.0700 40 1 12.4150 1.0253 -0.2884 41 1 11.0684 4.3866 0.5690 42 1 10.8918 7.6567 1.2041 43 1 10.5807 1.5908 -2.1907 44 1 9.6014 3.0128 -1.6251 45 1 6.2624 -3.2276 -0.0042 46 1 3.8043 -3.3454 0.0026 47 1 1.6336 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086424114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:56 Heat of formation + Delta-G solvation = 23.320901 kcal Electronic energy + Delta-G solvation = -27472.116016 eV Core-core repulsion = 23619.359515 eV Total energy + Delta-G solvation = -3852.756501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11040 -40.81918 -39.88323 -38.27345 -36.11207 -35.08205 -34.54995 -33.16062 -32.05128 -31.30732 -29.36882 -27.89138 -26.44771 -25.78704 -25.30288 -24.33135 -23.19153 -22.93392 -21.81470 -20.01368 -19.41325 -19.07867 -18.87367 -17.85502 -17.03729 -16.71928 -16.63592 -16.58010 -15.91012 -15.74394 -15.41732 -15.39121 -15.20013 -14.98368 -14.74257 -14.58291 -14.25794 -14.12842 -14.05816 -13.72932 -13.29926 -13.17847 -12.93841 -12.92757 -12.63665 -12.47874 -12.40807 -12.22579 -12.20336 -12.08701 -11.69843 -11.67160 -11.50157 -11.34324 -10.96876 -10.83286 -10.61235 -10.18422 -9.75942 -9.21899 -9.00465 -7.95339 -5.23845 -0.88940 -0.38431 0.86749 1.32766 1.47145 1.50135 1.56145 1.99064 2.14141 2.55639 2.91479 3.02644 3.36768 3.51736 3.61517 3.71003 3.75476 3.77365 3.80113 3.91548 3.99462 4.13161 4.15207 4.31131 4.31337 4.39154 4.40483 4.64543 4.69051 4.71972 4.74943 4.88137 4.89968 4.91894 4.97555 5.00070 5.04562 5.10290 5.20065 5.23328 5.29631 5.33553 5.43313 5.44520 5.52603 5.54213 5.65134 5.83073 6.27953 6.29480 6.63723 7.01550 7.32782 8.10126 8.32484 9.27833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.002240 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.652513 B =12494.264931 C =14668.045072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.106 4.106 5 C 0.093 3.907 6 N -0.462 5.462 7 C 0.092 3.908 8 C 0.565 3.435 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.137 3.863 12 C -0.105 4.105 13 H 0.077 0.923 14 C -0.131 4.131 15 C 0.145 3.855 16 H 0.063 0.937 17 N -0.720 5.720 18 C -0.244 4.244 19 H 0.077 0.923 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.277 1.277 26 C -0.155 4.155 27 C -0.138 4.138 28 C -0.049 4.049 29 C -0.093 4.093 30 C -0.106 4.106 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.413 0.587 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.156 0.844 46 H 0.186 0.814 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.818 -20.818 -1.689 30.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.124 4.124 5 C -0.031 4.031 6 N -0.174 5.174 7 C -0.061 4.061 8 C 0.350 3.650 9 O -0.442 6.442 10 N -0.350 5.350 11 C 0.014 3.986 12 C -0.123 4.123 13 H 0.095 0.905 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.081 0.919 17 N -0.358 5.358 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.203 1.203 26 C -0.195 4.195 27 C -0.158 4.158 28 C -0.074 4.074 29 C -0.096 4.096 30 C -0.124 4.124 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.250 0.750 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.174 0.826 46 H 0.203 0.797 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.846 -20.527 -1.823 30.032 hybrid contribution -0.166 1.003 0.120 1.024 sum -22.012 -19.524 -1.703 29.472 Atomic orbital electron populations 1.20939 0.88243 1.04393 1.03677 1.20190 0.98318 0.92446 0.96408 1.21209 0.93202 0.99576 0.97422 1.21049 0.94710 0.96589 1.00070 1.19203 0.88539 0.94600 1.00756 1.67726 1.08752 1.30250 1.10651 1.21272 0.93483 0.90763 1.00536 1.18196 0.86568 0.83727 0.76507 1.90736 1.66786 1.34635 1.52036 1.45960 1.08349 1.08598 1.72102 1.21464 0.78389 0.96290 1.02455 1.22495 0.97439 0.93999 0.98401 0.90510 1.23333 0.94549 0.99113 0.99988 1.21417 0.95559 0.84460 0.95109 0.91889 1.42303 1.73481 1.00558 1.19433 1.19651 1.32446 0.85643 0.99804 0.90512 1.25577 1.02632 1.00789 0.97865 1.69812 1.51136 1.24159 1.16911 0.85205 0.78141 0.78923 0.77455 1.20467 1.22221 1.20310 1.23757 1.00189 0.99530 0.96058 1.21847 0.96207 0.98026 0.99768 1.21873 0.92795 0.99076 0.93697 1.19252 0.96159 0.93588 1.00554 1.21202 0.91024 0.99993 1.00175 0.89710 0.90296 0.89827 0.82767 0.84713 0.75013 0.91099 0.90588 0.92244 0.87230 0.79427 0.94020 0.88947 0.93777 0.82599 0.79666 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.98 71.23 0.71 0.14 16 2 C -0.07 -0.83 5.85 -20.07 -0.12 -0.95 16 3 C -0.09 -1.32 9.58 22.04 0.21 -1.11 16 4 C -0.11 -2.13 9.99 22.38 0.22 -1.90 16 5 C 0.09 2.19 6.61 40.47 0.27 2.46 16 6 N -0.46 -12.64 9.47 -177.77 -1.68 -14.32 16 7 C 0.09 2.47 6.75 42.31 0.29 2.76 16 8 C 0.56 16.92 7.81 86.91 0.68 17.60 16 9 O -0.56 -19.00 16.28 -3.71 -0.06 -19.07 16 10 N -0.70 -20.04 5.54 -465.55 -2.58 -22.62 16 11 C 0.14 3.77 5.50 86.38 0.47 4.24 16 12 C -0.10 -3.22 3.62 -10.27 -0.04 -3.26 16 13 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 14 C -0.13 -4.11 7.39 31.12 0.23 -3.88 16 15 C 0.14 5.68 4.57 45.58 0.21 5.88 16 16 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 17 N -0.72 -36.49 5.31 -320.18 -1.70 -38.18 16 18 C -0.24 -13.63 9.97 84.03 0.84 -12.79 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 22 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C -0.15 -5.24 7.44 31.18 0.23 -5.01 16 27 C -0.14 -2.87 9.54 22.36 0.21 -2.66 16 28 C -0.05 -0.75 9.88 22.48 0.22 -0.52 16 29 C -0.09 -1.68 5.75 -21.22 -0.12 -1.80 16 30 C -0.11 -1.26 9.37 22.31 0.21 -1.05 16 31 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 33 H 0.08 0.21 8.07 -2.39 -0.02 0.20 16 34 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.41 11.85 7.78 -92.71 -0.72 11.13 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 2.03 7.88 -2.38 -0.02 2.01 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 2.78 8.10 -2.39 -0.02 2.76 16 41 H 0.37 20.34 7.90 -92.71 -0.73 19.60 16 42 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 43 H 0.09 2.69 7.92 -2.38 -0.02 2.67 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.16 2.95 7.60 -2.91 -0.02 2.92 16 46 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -72.72 396.13 1.03 -71.69 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.45 Total: 39.31 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.20 Total: -5.81 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.68 Total: -134.57 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -72.72 1.03 -71.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086424114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.015 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds