Wall clock time and date at job start Tue Mar 31 2020 22:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39039 * 121.01787 * 2 1 4 4 C 1.47756 * 120.27098 * 0.03893 * 3 2 1 5 5 O 1.21561 * 120.00033 * 6.04988 * 4 3 2 6 6 N 1.34778 * 119.99804 * 186.05509 * 4 3 2 7 7 C 1.46505 * 119.99991 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47250 * 179.97438 * 7 6 4 9 9 H 1.09001 * 112.84996 * 316.19117 * 8 7 6 10 10 C 1.53772 * 113.61475 * 87.50178 * 8 7 6 11 11 C 1.53779 * 87.08325 * 139.98119 * 10 8 7 12 12 H 1.09001 * 113.61573 * 220.02085 * 11 10 8 13 13 N 1.46496 * 113.69164 * 89.12674 * 11 10 8 14 14 C 1.36939 * 120.00269 * 107.46588 * 13 11 10 15 15 H 1.07998 * 119.99486 * 0.02562 * 14 13 11 16 16 C 1.38808 * 120.00180 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99893 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00006 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47400 * 89.99872 * 18 16 14 20 20 H 1.48507 * 109.47109 * 209.99707 * 18 16 14 21 21 H 1.48503 * 109.47264 * 329.99509 * 18 16 14 22 22 C 1.53781 * 87.08142 * 334.56930 * 11 10 8 23 23 C 1.40566 * 119.45958 * 180.02562 * 3 2 1 24 24 N 1.30822 * 121.54029 * 359.97332 * 23 3 2 25 25 C 1.33792 * 121.72252 * 0.04579 * 24 23 3 26 26 C 1.40527 * 120.82699 * 179.97438 * 25 24 23 27 27 C 1.36132 * 119.81029 * 180.22951 * 26 25 24 28 28 C 1.39345 * 121.09484 * 359.45959 * 27 26 25 29 29 C 1.36130 * 120.83688 * 0.57031 * 28 27 26 30 30 C 1.40494 * 121.01252 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.47333 * 276.32990 * 1 2 3 32 32 H 1.09006 * 109.46851 * 36.33292 * 1 2 3 33 33 H 1.09007 * 109.46968 * 156.32616 * 1 2 3 34 34 H 0.96999 * 120.00081 * 359.97438 * 6 4 3 35 35 H 1.08995 * 109.47176 * 300.00044 * 7 6 4 36 36 H 1.08999 * 109.46669 * 59.99572 * 7 6 4 37 37 H 1.08997 * 113.61970 * 254.53105 * 10 8 7 38 38 H 1.09000 * 113.61796 * 25.43602 * 10 8 7 39 39 H 0.97006 * 120.00123 * 287.46552 * 13 11 10 40 40 H 0.96996 * 119.99856 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.61439 * 270.88539 * 22 11 10 42 42 H 1.08996 * 113.61841 * 139.98264 * 22 11 10 43 43 H 1.08003 * 119.22664 * 180.02562 * 23 3 2 44 44 H 1.07998 * 120.09527 * 359.96354 * 26 25 24 45 45 H 1.08003 * 119.45219 * 179.75146 * 27 26 25 46 46 H 1.08008 * 119.58060 * 180.28564 * 28 27 26 47 47 H 1.08001 * 120.19370 * 179.73117 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5137 2.4875 0.0009 5 8 0.3036 2.5176 0.1125 6 7 2.2080 3.6361 -0.1223 7 6 1.5041 4.9210 -0.1220 8 6 2.5172 6.0575 -0.2736 9 1 3.4007 5.9230 0.3505 10 6 2.8408 6.4032 -1.7366 11 6 2.8284 7.8800 -1.3081 12 1 2.3578 8.5417 -2.0353 13 7 4.1306 8.3713 -0.8510 14 6 4.8521 9.2309 -1.6358 15 1 4.4608 9.5470 -2.5915 16 6 6.0857 9.6968 -1.2024 17 7 6.7789 10.5235 -1.9566 18 14 6.7622 9.1506 0.4509 19 1 7.5692 7.9170 0.2725 20 1 7.6184 10.2250 1.0147 21 1 5.6367 8.8759 1.3799 22 6 1.8926 7.4584 -0.1629 23 6 3.6287 1.1533 -0.0005 24 7 4.2824 0.0202 -0.0005 25 6 3.6482 -1.1579 -0.0009 26 6 4.3694 -2.3640 -0.0014 27 6 3.7030 -3.5510 -0.0066 28 6 2.3102 -3.5944 -0.0001 29 6 1.5763 -2.4478 0.0000 30 6 2.2309 -1.2041 -0.0005 31 1 -0.3633 0.1133 1.0213 32 1 -0.3633 0.8279 -0.6089 33 1 -0.3633 -0.9412 -0.4127 34 1 3.1736 3.6121 -0.2111 35 1 0.7990 4.9492 -0.9526 36 1 0.9640 5.0391 0.8174 37 1 3.8196 6.0513 -2.0622 38 1 2.0435 6.1440 -2.4331 39 1 4.4819 8.0877 0.0075 40 1 7.6411 10.8487 -1.6539 41 1 0.8360 7.4876 -0.4292 42 1 2.1059 7.9583 0.7818 43 1 4.1814 2.0812 -0.0001 44 1 5.4493 -2.3492 -0.0021 45 1 4.2630 -4.4744 -0.0110 46 1 1.8065 -4.5498 0.0003 47 1 0.4973 -2.4936 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086430791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:27 Heat of formation + Delta-G solvation = 53.705783 kcal Electronic energy + Delta-G solvation = -27858.046036 eV Core-core repulsion = 24006.607122 eV Total energy + Delta-G solvation = -3851.438914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.48797 -39.85141 -38.71964 -37.27341 -35.31235 -34.53966 -33.31888 -31.39925 -30.73828 -30.59164 -28.61205 -27.33827 -25.21958 -24.64959 -24.30773 -23.36686 -21.84977 -21.49775 -21.09703 -19.02864 -18.34451 -18.13790 -17.71421 -17.29956 -16.14628 -15.95199 -15.66059 -15.10954 -14.83740 -14.80399 -14.67829 -14.39976 -14.30266 -13.91838 -13.60405 -13.58966 -13.22918 -13.12391 -12.84679 -12.58728 -12.40346 -12.20935 -12.17859 -12.06247 -11.90361 -11.60641 -11.39483 -10.94533 -10.57161 -10.55333 -10.38018 -10.21406 -10.05056 -9.73184 -9.64303 -9.54302 -9.30365 -9.10845 -8.94325 -8.62663 -7.33470 -5.82296 -3.18757 -0.15890 0.21699 1.45617 2.19788 2.92208 2.97300 3.33022 3.35226 3.41663 3.69638 3.80274 4.07496 4.24030 4.28212 4.38691 4.53329 4.53562 4.66632 4.78204 4.87410 4.89259 4.98821 5.01232 5.06667 5.25996 5.35325 5.36202 5.39307 5.45801 5.47478 5.56253 5.60604 5.70792 5.77735 5.80313 5.86417 5.94150 6.03311 6.08203 6.09593 6.19972 6.26518 6.36396 6.44580 6.58892 6.69323 6.85302 7.29855 7.47679 7.95381 7.98416 8.37342 9.14959 9.87139 10.06125 11.35747 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002189 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.286584 B =12785.921609 C =14084.517531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.049 3.951 3 C -0.205 4.205 4 C 0.563 3.437 5 O -0.535 6.535 6 N -0.718 5.718 7 C 0.132 3.868 8 C -0.125 4.125 9 H 0.090 0.910 10 C -0.167 4.167 11 C 0.172 3.828 12 H 0.071 0.929 13 N -0.730 5.730 14 C -0.247 4.247 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.148 4.148 23 C 0.168 3.832 24 N -0.480 5.480 25 C 0.145 3.855 26 C -0.099 4.099 27 C -0.092 4.092 28 C -0.122 4.122 29 C -0.087 4.087 30 C -0.115 4.115 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.162 0.838 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 -29.040 5.332 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.040 3.960 3 C -0.210 4.210 4 C 0.350 3.650 5 O -0.413 6.413 6 N -0.369 5.369 7 C 0.009 3.991 8 C -0.144 4.144 9 H 0.108 0.892 10 C -0.208 4.208 11 C 0.061 3.939 12 H 0.089 0.911 13 N -0.370 5.370 14 C -0.377 4.377 15 H 0.110 0.890 16 C -0.191 4.191 17 N -0.579 5.579 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.188 4.188 23 C -0.006 4.006 24 N -0.188 5.188 25 C 0.024 3.976 26 C -0.117 4.117 27 C -0.111 4.111 28 C -0.140 4.140 29 C -0.105 4.105 30 C -0.117 4.117 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.179 0.821 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.847 -28.901 5.222 31.668 hybrid contribution 0.406 -0.351 1.174 1.291 sum -11.440 -29.252 6.396 32.054 Atomic orbital electron populations 1.21199 0.88676 1.03921 1.04493 1.20675 0.97299 0.90499 0.87521 1.20798 0.95152 0.94273 1.10775 1.17923 0.86899 0.83406 0.76799 1.90723 1.13475 1.87124 1.50027 1.45998 1.11130 1.06044 1.73775 1.21518 0.94875 0.80649 1.02050 1.22770 0.98259 0.93695 0.99629 0.89160 1.23865 1.01436 1.01450 0.94020 1.20999 0.86413 0.92325 0.94198 0.91073 1.42511 1.18181 1.55248 1.21029 1.19107 0.99023 1.18606 1.00963 0.89028 1.24688 0.97168 0.99213 0.97988 1.69699 1.14431 1.36115 1.37615 0.86566 0.78855 0.78147 0.85048 1.21001 1.21651 1.20325 1.23462 0.99640 0.94568 1.01103 1.23060 0.90120 0.96691 0.90735 1.67966 1.39476 0.97467 1.13873 1.19030 0.89598 0.92647 0.96292 1.20863 1.00686 0.90060 1.00116 1.21010 0.94536 0.98101 0.97492 1.20959 0.94126 0.98623 1.00337 1.21117 1.00376 0.90994 0.98026 1.18729 0.94005 0.94089 1.04868 0.89436 0.87632 0.91528 0.76351 0.91115 0.91505 0.91250 0.90887 0.80518 0.92967 0.89969 0.91398 0.82053 0.84378 0.85032 0.85235 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.49 36.01 0.31 -0.82 16 2 C 0.05 0.51 5.99 -103.47 -0.62 -0.11 16 3 C -0.20 -2.27 5.89 -104.83 -0.62 -2.89 16 4 C 0.56 6.80 7.71 -12.37 -0.10 6.71 16 5 O -0.53 -7.61 13.45 5.31 0.07 -7.54 16 6 N -0.72 -7.84 5.51 -61.28 -0.34 -8.18 16 7 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 8 C -0.12 -1.63 3.63 -89.81 -0.33 -1.96 16 9 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.17 -2.51 7.43 -25.92 -0.19 -2.70 16 11 C 0.17 3.10 4.56 -67.12 -0.31 2.80 16 12 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 13 N -0.73 -16.49 5.12 -52.64 -0.27 -16.76 16 14 C -0.25 -6.79 10.45 -15.06 -0.16 -6.95 16 15 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 18 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 22 C -0.15 -2.11 7.39 -25.92 -0.19 -2.30 16 23 C 0.17 1.79 10.67 -17.10 -0.18 1.60 16 24 N -0.48 -5.68 10.30 -10.67 -0.11 -5.79 16 25 C 0.14 1.58 6.61 -84.79 -0.56 1.02 16 26 C -0.10 -0.85 9.97 -39.48 -0.39 -1.24 16 27 C -0.09 -0.58 9.94 -39.93 -0.40 -0.98 16 28 C -0.12 -0.74 9.96 -39.93 -0.40 -1.14 16 29 C -0.09 -0.64 9.32 -39.47 -0.37 -1.01 16 30 C -0.11 -1.15 5.74 -106.81 -0.61 -1.76 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.12 5.93 -51.93 -0.31 0.81 16 33 H 0.07 0.43 6.21 -51.93 -0.32 0.11 16 34 H 0.40 3.72 6.53 -40.82 -0.27 3.46 16 35 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 39 H 0.36 8.01 5.76 -40.82 -0.24 7.78 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.16 1.33 6.42 -52.48 -0.34 0.99 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 46 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 47 H 0.14 0.71 6.30 -52.49 -0.33 0.37 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -33.46 381.92 -10.49 -43.95 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.43 Total: 9.90 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -5.23 Total: -10.15 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.06 Total: -58.79 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.07 Total: -7.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.46 -10.49 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086430791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.656 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds