Wall clock time and date at job start Tue Mar 31 2020 22:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39039 * 121.01787 * 2 1 4 4 C 1.47756 * 120.27098 * 0.03893 * 3 2 1 5 5 O 1.21561 * 120.00033 * 6.04988 * 4 3 2 6 6 N 1.34778 * 119.99804 * 186.05509 * 4 3 2 7 7 C 1.46505 * 119.99991 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47250 * 179.97438 * 7 6 4 9 9 H 1.09001 * 112.84996 * 316.19117 * 8 7 6 10 10 C 1.53772 * 113.61475 * 87.50178 * 8 7 6 11 11 C 1.53779 * 87.08325 * 139.98119 * 10 8 7 12 12 H 1.09001 * 113.61573 * 220.02085 * 11 10 8 13 13 N 1.46496 * 113.69164 * 89.12674 * 11 10 8 14 14 C 1.36939 * 120.00269 * 107.46588 * 13 11 10 15 15 H 1.07998 * 119.99486 * 0.02562 * 14 13 11 16 16 C 1.38808 * 120.00180 * 179.97438 * 14 13 11 17 17 N 1.31624 * 119.99893 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00006 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47400 * 89.99872 * 18 16 14 20 20 H 1.48507 * 109.47109 * 209.99707 * 18 16 14 21 21 H 1.48503 * 109.47264 * 329.99509 * 18 16 14 22 22 C 1.53781 * 87.08142 * 334.56930 * 11 10 8 23 23 C 1.40566 * 119.45958 * 180.02562 * 3 2 1 24 24 N 1.30822 * 121.54029 * 359.97332 * 23 3 2 25 25 C 1.33792 * 121.72252 * 0.04579 * 24 23 3 26 26 C 1.40527 * 120.82699 * 179.97438 * 25 24 23 27 27 C 1.36132 * 119.81029 * 180.22951 * 26 25 24 28 28 C 1.39345 * 121.09484 * 359.45959 * 27 26 25 29 29 C 1.36130 * 120.83688 * 0.57031 * 28 27 26 30 30 C 1.40494 * 121.01252 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.47333 * 276.32990 * 1 2 3 32 32 H 1.09006 * 109.46851 * 36.33292 * 1 2 3 33 33 H 1.09007 * 109.46968 * 156.32616 * 1 2 3 34 34 H 0.96999 * 120.00081 * 359.97438 * 6 4 3 35 35 H 1.08995 * 109.47176 * 300.00044 * 7 6 4 36 36 H 1.08999 * 109.46669 * 59.99572 * 7 6 4 37 37 H 1.08997 * 113.61970 * 254.53105 * 10 8 7 38 38 H 1.09000 * 113.61796 * 25.43602 * 10 8 7 39 39 H 0.97006 * 120.00123 * 287.46552 * 13 11 10 40 40 H 0.96996 * 119.99856 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.61439 * 270.88539 * 22 11 10 42 42 H 1.08996 * 113.61841 * 139.98264 * 22 11 10 43 43 H 1.08003 * 119.22664 * 180.02562 * 23 3 2 44 44 H 1.07998 * 120.09527 * 359.96354 * 26 25 24 45 45 H 1.08003 * 119.45219 * 179.75146 * 27 26 25 46 46 H 1.08008 * 119.58060 * 180.28564 * 28 27 26 47 47 H 1.08001 * 120.19370 * 179.73117 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5137 2.4875 0.0009 5 8 0.3036 2.5176 0.1125 6 7 2.2080 3.6361 -0.1223 7 6 1.5041 4.9210 -0.1220 8 6 2.5172 6.0575 -0.2736 9 1 3.4007 5.9230 0.3505 10 6 2.8408 6.4032 -1.7366 11 6 2.8284 7.8800 -1.3081 12 1 2.3578 8.5417 -2.0353 13 7 4.1306 8.3713 -0.8510 14 6 4.8521 9.2309 -1.6358 15 1 4.4608 9.5470 -2.5915 16 6 6.0857 9.6968 -1.2024 17 7 6.7789 10.5235 -1.9566 18 14 6.7622 9.1506 0.4509 19 1 7.5692 7.9170 0.2725 20 1 7.6184 10.2250 1.0147 21 1 5.6367 8.8759 1.3799 22 6 1.8926 7.4584 -0.1629 23 6 3.6287 1.1533 -0.0005 24 7 4.2824 0.0202 -0.0005 25 6 3.6482 -1.1579 -0.0009 26 6 4.3694 -2.3640 -0.0014 27 6 3.7030 -3.5510 -0.0066 28 6 2.3102 -3.5944 -0.0001 29 6 1.5763 -2.4478 0.0000 30 6 2.2309 -1.2041 -0.0005 31 1 -0.3633 0.1133 1.0213 32 1 -0.3633 0.8279 -0.6089 33 1 -0.3633 -0.9412 -0.4127 34 1 3.1736 3.6121 -0.2111 35 1 0.7990 4.9492 -0.9526 36 1 0.9640 5.0391 0.8174 37 1 3.8196 6.0513 -2.0622 38 1 2.0435 6.1440 -2.4331 39 1 4.4819 8.0877 0.0075 40 1 7.6411 10.8487 -1.6539 41 1 0.8360 7.4876 -0.4292 42 1 2.1059 7.9583 0.7818 43 1 4.1814 2.0812 -0.0001 44 1 5.4493 -2.3492 -0.0021 45 1 4.2630 -4.4744 -0.0110 46 1 1.8065 -4.5498 0.0003 47 1 0.4973 -2.4936 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086430791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:26 Heat of formation + Delta-G solvation = 32.320811 kcal Electronic energy + Delta-G solvation = -27858.973358 eV Core-core repulsion = 24006.607122 eV Total energy + Delta-G solvation = -3852.366236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20208 -40.79252 -39.91372 -37.92777 -36.31918 -35.50263 -34.97627 -32.77197 -31.89089 -31.32748 -29.46299 -28.34760 -26.44600 -25.70591 -25.07437 -24.81088 -23.12382 -22.25474 -21.87588 -20.28684 -19.59608 -19.26431 -18.85220 -18.10303 -16.98981 -16.81850 -16.61346 -16.46677 -16.11765 -15.67204 -15.52815 -15.40910 -15.11889 -14.96088 -14.78627 -14.60942 -14.54079 -14.16435 -13.87409 -13.82358 -13.35584 -13.16620 -13.05872 -13.00704 -12.79802 -12.75510 -12.64527 -12.44843 -12.24125 -11.88833 -11.63574 -11.49821 -11.26547 -11.07219 -10.93375 -10.85028 -10.46117 -10.14356 -9.84895 -9.29057 -9.26319 -8.02511 -5.35984 -0.83738 -0.45571 0.80155 1.37711 1.41428 1.48482 1.48668 2.06387 2.19066 2.48229 3.01187 3.13450 3.27977 3.43534 3.52218 3.53804 3.55825 3.74242 3.76008 3.82335 3.93654 4.01553 4.18222 4.28263 4.29892 4.38654 4.39806 4.42371 4.55782 4.68886 4.72299 4.78071 4.90735 4.94607 4.95736 4.99142 5.02590 5.08776 5.16192 5.27591 5.33610 5.38311 5.40420 5.46312 5.51074 5.55926 5.81307 5.82517 6.22985 6.43265 6.74640 7.08305 7.09836 7.85440 8.03741 9.18976 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002189 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.286584 B =12785.921609 C =14084.517531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.044 3.956 3 C -0.222 4.222 4 C 0.565 3.435 5 O -0.559 6.559 6 N -0.714 5.714 7 C 0.141 3.859 8 C -0.107 4.107 9 H 0.091 0.909 10 C -0.155 4.155 11 C 0.144 3.856 12 H 0.057 0.943 13 N -0.733 5.733 14 C -0.231 4.231 15 H 0.056 0.944 16 C -0.067 4.067 17 N -0.984 5.984 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.250 1.250 22 C -0.132 4.132 23 C 0.161 3.839 24 N -0.505 5.505 25 C 0.119 3.881 26 C -0.122 4.122 27 C -0.078 4.078 28 C -0.116 4.116 29 C -0.093 4.093 30 C -0.130 4.130 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.367 0.633 40 H 0.257 0.743 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.177 0.823 44 H 0.141 0.859 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -32.595 6.977 35.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 C -0.227 4.227 4 C 0.353 3.647 5 O -0.440 6.440 6 N -0.365 5.365 7 C 0.018 3.982 8 C -0.125 4.125 9 H 0.109 0.891 10 C -0.196 4.196 11 C 0.034 3.966 12 H 0.075 0.925 13 N -0.375 5.375 14 C -0.362 4.362 15 H 0.074 0.926 16 C -0.258 4.258 17 N -0.635 5.635 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.174 1.174 22 C -0.171 4.171 23 C -0.013 4.013 24 N -0.213 5.213 25 C -0.001 4.001 26 C -0.141 4.141 27 C -0.097 4.097 28 C -0.134 4.134 29 C -0.111 4.111 30 C -0.132 4.132 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.246 0.754 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.194 0.806 44 H 0.159 0.841 45 H 0.181 0.819 46 H 0.182 0.818 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.332 -32.501 6.874 35.796 hybrid contribution 0.763 0.629 0.545 1.129 sum -12.569 -31.873 7.419 35.056 Atomic orbital electron populations 1.21159 0.87720 1.04538 1.04287 1.20956 0.98074 0.90665 0.86787 1.20764 0.95384 0.94091 1.12499 1.18044 0.86598 0.83849 0.76236 1.90710 1.14446 1.87503 1.51364 1.45928 1.11553 1.05615 1.73388 1.21368 0.94277 0.80288 1.02311 1.22595 0.98447 0.93760 0.97742 0.89125 1.23717 1.01319 0.98571 0.95971 1.21356 0.85365 0.93583 0.96254 0.92500 1.42433 1.19490 1.54867 1.20729 1.19062 0.99065 1.18102 0.99974 0.92583 1.25531 0.97828 1.00031 1.02400 1.69889 1.15018 1.38486 1.40099 0.85404 0.78585 0.77352 0.80406 1.20316 1.22519 1.17396 1.23351 1.00113 0.94495 0.99115 1.23277 0.90188 0.97123 0.90706 1.67964 1.40241 0.98180 1.14908 1.19445 0.90528 0.93066 0.97030 1.21065 1.01110 0.90266 1.01646 1.21442 0.95106 0.98415 0.94770 1.21413 0.94041 0.99651 0.98255 1.21435 1.01665 0.90337 0.97702 1.18937 0.93802 0.95017 1.05468 0.89378 0.89438 0.88965 0.75426 0.91055 0.91082 0.92934 0.89018 0.79960 0.93380 0.87390 0.91505 0.80597 0.84099 0.81900 0.81788 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.49 71.24 0.60 -1.41 16 2 C 0.04 0.89 5.99 -19.12 -0.11 0.77 16 3 C -0.22 -4.88 5.89 -20.00 -0.12 -5.00 16 4 C 0.56 13.27 7.71 86.76 0.67 13.94 16 5 O -0.56 -15.55 13.45 -3.91 -0.05 -15.61 16 6 N -0.71 -14.58 5.51 -466.06 -2.57 -17.15 16 7 C 0.14 2.96 5.51 86.38 0.48 3.44 16 8 C -0.11 -2.54 3.63 -10.27 -0.04 -2.58 16 9 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 10 C -0.16 -4.47 7.43 31.12 0.23 -4.24 16 11 C 0.14 5.07 4.56 45.52 0.21 5.28 16 12 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 13 N -0.73 -32.85 5.12 -320.46 -1.64 -34.49 16 14 C -0.23 -12.99 10.45 84.03 0.88 -12.11 16 15 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.98 -63.05 13.97 21.65 0.30 -62.75 16 18 Si 0.96 44.80 27.74 68.60 1.90 46.71 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 22 C -0.13 -3.43 7.39 31.12 0.23 -3.20 16 23 C 0.16 3.43 10.67 85.41 0.91 4.34 16 24 N -0.50 -12.06 10.30 -187.68 -1.93 -13.99 16 25 C 0.12 2.56 6.61 40.29 0.27 2.82 16 26 C -0.12 -1.96 9.97 22.34 0.22 -1.74 16 27 C -0.08 -0.76 9.94 22.05 0.22 -0.54 16 28 C -0.12 -0.98 9.96 22.05 0.22 -0.76 16 29 C -0.09 -1.12 9.32 22.34 0.21 -0.92 16 30 C -0.13 -2.46 5.74 -21.28 -0.12 -2.58 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.82 5.93 -2.38 -0.01 1.81 16 33 H 0.09 0.98 6.21 -2.38 -0.01 0.97 16 34 H 0.41 7.05 6.53 -92.71 -0.61 6.45 16 35 H 0.07 1.54 7.84 -2.39 -0.02 1.52 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.31 7.90 -2.39 -0.02 2.29 16 39 H 0.37 15.62 5.76 -92.70 -0.53 15.08 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.18 2.87 6.42 -2.91 -0.02 2.86 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 46 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 47 H 0.16 1.10 6.30 -2.91 -0.02 1.08 16 Total: -1.00 -75.58 381.92 1.25 -74.33 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.18 Total: 30.86 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.42 Total: -7.91 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -5.84 Total: -128.38 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.71 kcal Total: -75.58 1.25 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086430791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.652 kcal (2) G-P(sol) polarization free energy of solvation -75.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds