Wall clock time and date at job start Tue Mar 31 2020 22:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34658 * 125.80667 * 2 1 4 4 H 0.97001 * 124.85002 * 359.95884 * 3 2 1 5 5 C 1.36448 * 110.30201 * 179.97438 * 3 2 1 6 6 C 1.34486 * 108.85458 * 359.74624 * 5 3 2 7 7 C 1.36776 * 125.79946 * 179.97438 * 2 1 3 8 8 C 1.47262 * 126.94155 * 359.97438 * 7 2 1 9 9 O 1.21625 * 120.00083 * 359.97438 * 8 7 2 10 10 N 1.34781 * 119.99939 * 179.97438 * 8 7 2 11 11 C 1.46497 * 119.99953 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.77693 * 31.76417 * 11 10 8 13 13 C 1.54325 * 110.72131 * 268.52482 * 11 10 8 14 14 N 1.47290 * 107.30599 * 219.45483 * 13 11 10 15 15 C 1.36938 * 125.79079 * 178.92205 * 14 13 11 16 16 H 1.08005 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00146 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47595 * 59.99628 * 19 17 15 21 21 H 1.48504 * 109.46820 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46978 * 299.99208 * 19 17 15 23 23 C 1.47425 * 108.55742 * 358.92448 * 14 13 11 24 24 C 1.54908 * 104.92961 * 24.15407 * 23 14 13 25 25 H 1.09008 * 111.00494 * 81.01141 * 24 23 14 26 26 C 1.50693 * 111.00476 * 204.82145 * 24 23 14 27 27 C 1.38237 * 119.99816 * 58.27793 * 26 24 23 28 28 C 1.38241 * 119.99962 * 179.80959 * 27 26 24 29 29 C 1.38231 * 119.99957 * 0.39446 * 28 27 26 30 30 C 1.38246 * 119.99887 * 359.85829 * 29 28 27 31 31 C 1.38230 * 119.99920 * 359.95559 * 30 29 28 32 32 H 1.08994 * 109.46866 * 270.02502 * 1 2 3 33 33 H 1.09000 * 109.47008 * 30.02457 * 1 2 3 34 34 H 1.09003 * 109.46940 * 150.01907 * 1 2 3 35 35 H 1.08004 * 125.56844 * 180.02562 * 5 3 2 36 36 H 1.07994 * 126.83496 * 180.25037 * 6 5 3 37 37 H 0.96996 * 119.99924 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.88239 * 338.86280 * 13 11 10 39 39 H 1.08995 * 109.88239 * 99.87201 * 13 11 10 40 40 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36696 * 265.26054 * 23 14 13 42 42 H 1.08995 * 110.36608 * 143.04891 * 23 14 13 43 43 H 1.07994 * 120.00223 * 359.97438 * 27 26 24 44 44 H 1.07998 * 119.99799 * 180.22601 * 28 27 26 45 45 H 1.08004 * 120.00395 * 179.83517 * 29 28 27 46 46 H 1.08002 * 119.99772 * 179.97438 * 30 29 28 47 47 H 1.08004 * 119.99604 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 -0.0006 5 6 3.6096 0.7273 0.0006 6 6 3.6882 -0.6152 0.0066 7 6 2.3071 -1.1094 0.0005 8 6 1.8702 -2.5157 0.0017 9 8 0.6839 -2.7839 0.0027 10 7 2.7849 -3.5055 0.0015 11 6 2.3503 -4.9045 0.0032 12 1 1.4075 -5.0172 -0.5321 13 6 2.2254 -5.4357 1.4468 14 7 2.7318 -6.8188 1.4500 15 6 2.8132 -7.6393 2.5434 16 1 3.2021 -8.6414 2.4387 17 6 2.3960 -7.1830 3.7862 18 7 1.9226 -5.9615 3.9138 19 14 2.5078 -8.3020 5.2777 20 1 3.9229 -8.6954 5.4965 21 1 2.0037 -7.5826 6.4751 22 1 1.6861 -9.5172 5.0475 23 6 3.1372 -7.1733 0.0777 24 6 3.4427 -5.8195 -0.6105 25 1 4.4403 -5.4654 -0.3504 26 6 3.2830 -5.9251 -2.1052 27 6 2.0715 -6.3150 -2.6449 28 6 1.9237 -6.4081 -4.0163 29 6 2.9898 -6.1192 -4.8475 30 6 4.2028 -5.7344 -4.3075 31 6 4.3494 -5.6376 -2.9364 32 1 -0.3633 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5136 35 1 4.4499 1.4059 0.0011 36 1 4.5889 -1.2110 0.0123 37 1 3.7310 -3.2916 0.0010 38 1 2.8222 -4.8213 2.1208 39 1 1.1810 -5.4204 1.7584 40 1 1.6314 -5.6425 4.7824 41 1 2.3247 -7.6858 -0.4375 42 1 4.0290 -7.7997 0.0954 43 1 1.2397 -6.5443 -1.9954 44 1 0.9762 -6.7092 -4.4381 45 1 2.8752 -6.1945 -5.9188 46 1 5.0358 -5.5091 -4.9569 47 1 5.2970 -5.3365 -2.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086581684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:11 Heat of formation + Delta-G solvation = 60.277842 kcal Electronic energy + Delta-G solvation = -29371.033842 eV Core-core repulsion = 25519.879914 eV Total energy + Delta-G solvation = -3851.153928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15451 -39.61783 -38.45853 -36.89183 -33.75558 -32.64178 -31.45568 -31.01747 -30.83042 -30.65069 -28.12344 -27.00237 -26.18049 -24.51251 -22.77145 -22.45236 -21.63038 -20.70807 -20.06105 -19.64064 -18.94032 -17.65041 -16.96513 -16.58872 -15.70447 -15.60002 -15.03193 -14.90352 -14.64749 -14.39830 -13.94316 -13.73198 -13.52178 -13.46369 -13.14731 -12.99091 -12.82112 -12.66344 -12.58423 -12.48295 -12.34476 -12.02996 -11.91800 -11.49391 -11.14171 -11.03881 -10.98954 -10.85678 -10.70549 -10.34672 -10.01164 -9.88500 -9.68853 -9.31958 -8.81543 -8.71178 -8.56280 -8.56015 -8.23107 -8.02669 -6.79092 -5.64153 -2.99717 1.58331 1.61971 1.95110 2.47829 3.12754 3.44684 3.48685 3.50421 3.86718 3.98133 4.01534 4.54155 4.86492 4.97183 4.98944 5.06566 5.16978 5.22195 5.27573 5.32841 5.43578 5.54386 5.59228 5.67523 5.70198 5.70982 5.80442 5.83812 5.88097 5.90357 6.02514 6.22654 6.23983 6.25907 6.35860 6.42103 6.61484 6.66243 6.72608 6.79478 6.80840 6.94936 6.96720 7.08970 7.22987 7.43144 7.62498 7.67972 7.91379 8.16980 8.30045 8.88543 9.25765 9.86367 10.51436 11.46219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.006953 B = 0.004635 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4026.040738 B = 6039.806253 C = 9073.541910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.023 4.023 6 C -0.166 4.166 7 C -0.226 4.226 8 C 0.590 3.410 9 O -0.551 6.551 10 N -0.707 5.707 11 C 0.130 3.870 12 H 0.091 0.909 13 C 0.172 3.828 14 N -0.604 5.604 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.148 3.852 24 C -0.076 4.076 25 H 0.085 0.915 26 C -0.054 4.054 27 C -0.110 4.110 28 C -0.119 4.119 29 C -0.134 4.134 30 C -0.123 4.123 31 C -0.119 4.119 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.395 0.605 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.043 0.957 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 12.647 -14.680 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.017 4.017 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.150 4.150 6 C -0.190 4.190 7 C -0.236 4.236 8 C 0.379 3.621 9 O -0.430 6.430 10 N -0.356 5.356 11 C 0.025 3.975 12 H 0.109 0.891 13 C 0.046 3.954 14 N -0.331 5.331 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.021 3.979 24 C -0.096 4.096 25 H 0.104 0.896 26 C -0.055 4.055 27 C -0.128 4.128 28 C -0.137 4.137 29 C -0.152 4.152 30 C -0.141 4.141 31 C -0.137 4.137 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.184 0.816 36 H 0.161 0.839 37 H 0.228 0.772 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.937 12.572 -14.419 19.354 hybrid contribution 0.613 0.062 0.893 1.085 sum 3.549 12.634 -13.525 18.845 Atomic orbital electron populations 1.20565 0.87073 1.03938 1.03561 1.20336 0.93713 0.85619 1.02070 1.41554 1.06247 1.08241 1.59167 0.75099 1.21649 0.85606 0.96412 1.11356 1.22047 0.95968 0.93624 1.07388 1.20258 0.93081 0.92428 1.17806 1.17254 0.85467 0.83864 0.75554 1.90719 1.16631 1.84331 1.51349 1.45621 1.09173 1.05784 1.75028 1.22456 0.96604 0.78756 0.99665 0.89103 1.21564 0.99674 0.85066 0.89068 1.44462 1.74220 1.11830 1.02555 1.18991 1.36745 0.94832 0.85393 0.90366 1.24813 1.01090 0.96746 0.97586 1.69963 1.47645 1.15716 1.23110 0.86217 0.77650 0.79570 0.82404 1.21205 1.21648 1.21154 1.21573 0.97444 0.92330 0.86548 1.21688 0.99586 0.98701 0.89622 0.89639 1.19812 0.93489 0.97159 0.95040 1.21110 0.97550 0.99126 0.94995 1.21101 0.98636 1.00307 0.93635 1.21043 0.93599 1.01247 0.99288 1.21041 0.97385 1.00598 0.95048 1.21025 0.98424 1.00904 0.93314 0.90401 0.92255 0.87893 0.81613 0.83860 0.77170 0.92968 0.93220 0.93668 0.95739 0.93828 0.85794 0.86433 0.86723 0.86615 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.88 36.01 0.36 -0.76 16 2 C 0.10 1.32 7.18 -81.88 -0.59 0.73 16 3 N -0.56 -5.37 5.90 -9.10 -0.05 -5.42 16 4 H 0.41 2.48 8.96 -40.82 -0.37 2.11 16 5 C -0.02 -0.23 11.89 -16.82 -0.20 -0.43 16 6 C -0.17 -2.06 10.56 -37.50 -0.40 -2.46 16 7 C -0.23 -3.51 6.29 -103.35 -0.65 -4.16 16 8 C 0.59 11.06 7.81 -12.59 -0.10 10.97 16 9 O -0.55 -11.97 14.46 5.26 0.08 -11.89 16 10 N -0.71 -12.51 5.10 -53.16 -0.27 -12.78 16 11 C 0.13 2.59 2.72 -66.10 -0.18 2.41 16 12 H 0.09 1.92 6.20 -51.93 -0.32 1.60 16 13 C 0.17 4.32 5.14 -2.92 -0.01 4.31 16 14 N -0.60 -15.53 3.40 -169.86 -0.58 -16.11 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 16 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 17 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 18 N -0.92 -27.66 10.33 55.49 0.57 -27.09 16 19 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.15 3.06 6.65 -2.53 -0.02 3.04 16 24 C -0.08 -1.33 2.89 -89.63 -0.26 -1.59 16 25 H 0.09 1.42 7.83 -51.92 -0.41 1.01 16 26 C -0.05 -0.84 5.00 -104.63 -0.52 -1.37 16 27 C -0.11 -1.69 8.28 -39.58 -0.33 -2.02 16 28 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 29 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 30 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 31 C -0.12 -1.60 9.69 -39.59 -0.38 -1.98 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.47 6.47 -51.93 -0.34 1.14 16 35 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.14 1.53 7.69 -52.49 -0.40 1.13 16 37 H 0.39 5.99 7.68 -40.82 -0.31 5.67 16 38 H 0.05 1.45 7.28 -51.93 -0.38 1.07 16 39 H 0.05 1.45 7.51 -51.93 -0.39 1.06 16 40 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.03 0.51 7.05 -51.93 -0.37 0.15 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.12 2.00 7.01 -52.49 -0.37 1.63 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.12 1.39 7.99 -52.48 -0.42 0.97 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -34.95 384.41 -10.78 -45.73 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.57 Total: 10.47 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.72 Total: -6.09 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.33 Total: -61.40 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.95 -10.78 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086581684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.010 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds