Wall clock time and date at job start Tue Mar 31 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36617 * 120.92217 * 2 1 4 4 C 1.39265 * 119.90335 * 179.97438 * 3 2 1 5 5 N 1.31147 * 121.77830 * 359.97438 * 4 3 2 6 6 C 1.33627 * 121.38606 * 359.97438 * 5 4 3 7 7 C 1.40763 * 120.82836 * 180.02562 * 6 5 4 8 8 C 1.35703 * 120.10602 * 179.76375 * 7 6 5 9 9 C 1.40637 * 120.92566 * 0.52353 * 8 7 6 10 10 C 1.47770 * 119.80136 * 179.73070 * 9 8 7 11 11 O 1.21557 * 119.99882 * 179.72371 * 10 9 8 12 12 N 1.34779 * 119.99701 * 359.72265 * 10 9 8 13 13 C 1.46502 * 119.99434 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.64376 * 325.70163 * 13 12 10 15 15 C 1.55162 * 110.71999 * 88.84559 * 13 12 10 16 16 C 1.54904 * 101.58121 * 154.04044 * 15 13 12 17 17 N 1.47422 * 104.83381 * 322.98867 * 16 15 13 18 18 C 1.36933 * 125.65123 * 204.09382 * 17 16 15 19 19 H 1.08005 * 120.00334 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00121 * 0.02795 * 18 17 16 21 21 N 1.31622 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00453 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47280 * 59.99432 * 22 20 18 24 24 H 1.48499 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46811 * 299.99552 * 22 20 18 26 26 C 1.47024 * 108.70528 * 24.13062 * 17 16 15 27 27 H 1.08998 * 109.88392 * 239.52596 * 26 17 16 28 28 C 1.52994 * 109.88613 * 118.35661 * 26 17 16 29 29 C 1.38543 * 120.39311 * 359.44880 * 9 8 7 30 30 C 1.40186 * 119.40651 * 0.27930 * 29 9 8 31 31 H 1.09000 * 109.47481 * 270.02741 * 1 2 3 32 32 H 1.09005 * 109.47031 * 30.02445 * 1 2 3 33 33 H 1.09001 * 109.47088 * 150.02290 * 1 2 3 34 34 H 1.07998 * 120.04295 * 359.97438 * 3 2 1 35 35 H 1.08005 * 119.11105 * 180.02562 * 4 3 2 36 36 H 1.07994 * 119.95100 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.53825 * 180.27090 * 8 7 6 38 38 H 0.96999 * 120.00054 * 359.97438 * 12 10 9 39 39 H 1.09000 * 110.99946 * 272.11421 * 15 13 12 40 40 H 1.09000 * 111.00168 * 35.96519 * 15 13 12 41 41 H 1.08998 * 110.36955 * 81.82737 * 16 15 13 42 42 H 1.09000 * 110.36921 * 204.03941 * 16 15 13 43 43 H 0.97003 * 120.00290 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47314 * 302.19944 * 28 26 17 45 45 H 1.09002 * 109.47104 * 62.19384 * 28 26 17 46 46 H 1.08997 * 109.47621 * 182.19126 * 28 26 17 47 47 H 1.08009 * 120.29479 * 180.25359 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1720 0.0000 4 6 3.6015 1.1472 0.0005 5 7 4.2722 0.0202 0.0016 6 6 3.6479 -1.1612 0.0026 7 6 4.3795 -2.3637 0.0043 8 6 3.7304 -3.5554 0.0102 9 6 2.3252 -3.6131 0.0037 10 6 1.6440 -4.9244 0.0044 11 8 0.4297 -4.9785 0.0039 12 7 2.3692 -6.0605 0.0055 13 6 1.6938 -7.3605 0.0055 14 1 0.7684 -7.3128 0.5796 15 6 1.4159 -7.8349 -1.4454 16 6 1.3695 -9.3728 -1.2663 17 7 2.4032 -9.6666 -0.2572 18 6 3.0512 -10.8631 -0.1034 19 1 3.7961 -10.9783 0.6701 20 6 2.7508 -11.9279 -0.9417 21 7 1.8427 -11.7877 -1.8841 22 14 3.6343 -13.5603 -0.7316 23 1 3.3749 -14.0918 0.6304 24 1 3.1357 -14.5267 -1.7429 25 1 5.0943 -13.3602 -0.9152 26 6 2.6225 -8.4626 0.5575 27 1 3.6623 -8.1454 0.4778 28 6 2.2746 -8.7525 2.0189 29 6 1.5759 -2.4478 0.0027 30 6 2.2308 -1.2083 0.0021 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6849 2.1162 -0.0004 35 1 4.1436 2.0813 0.0010 36 1 5.4592 -2.3380 0.0051 37 1 4.3009 -4.4725 0.0158 38 1 3.3383 -6.0173 0.0055 39 1 0.4597 -7.4543 -1.8044 40 1 2.2263 -7.5436 -2.1136 41 1 0.3887 -9.6834 -0.9062 42 1 1.6027 -9.8715 -2.2070 43 1 1.6325 -12.5318 -2.4698 44 1 1.2395 -9.0875 2.0864 45 1 2.9341 -9.5313 2.4018 46 1 2.4022 -7.8455 2.6097 47 1 0.4968 -2.4940 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088593178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:02 Heat of formation + Delta-G solvation = 23.906354 kcal Electronic energy + Delta-G solvation = -28476.838385 eV Core-core repulsion = 24624.107271 eV Total energy + Delta-G solvation = -3852.731114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.06659 -40.99654 -39.29799 -37.71224 -35.81311 -35.55891 -33.92078 -32.13670 -31.81436 -31.41461 -30.35994 -28.82785 -26.87039 -25.89449 -25.15501 -24.60827 -22.51790 -22.02452 -21.77388 -21.46857 -19.40641 -18.81086 -18.68113 -17.80588 -17.21909 -16.92595 -16.59165 -16.10659 -15.76305 -15.60342 -15.48233 -15.31237 -15.12923 -14.92026 -14.54802 -14.35424 -14.01447 -13.97486 -13.79696 -13.73557 -13.44212 -13.24471 -12.94766 -12.75705 -12.71328 -12.67616 -12.60026 -12.39528 -12.23410 -12.11449 -12.02234 -11.57178 -11.45728 -11.20031 -11.09294 -10.71585 -10.51448 -10.14390 -9.83077 -9.27267 -8.89531 -7.73902 -5.19004 -0.83488 -0.36090 0.83395 1.37628 1.48922 1.51693 1.57769 2.00361 2.26240 2.52766 3.04978 3.26140 3.36368 3.47523 3.51199 3.61778 3.70261 3.80458 3.83389 3.94808 3.97426 4.02312 4.19201 4.27636 4.46200 4.49706 4.51002 4.61624 4.65441 4.71067 4.75097 4.79982 4.85999 4.89630 4.95778 5.02407 5.04789 5.10895 5.14057 5.17721 5.33249 5.34449 5.49899 5.50946 5.59585 5.60352 5.75708 5.80754 6.31118 6.47797 6.88652 7.11737 7.12619 7.79557 8.43103 9.27828 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.002174 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.422653 B =12877.896107 C =13359.301617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.021 4.021 3 C -0.180 4.180 4 C 0.144 3.856 5 N -0.512 5.512 6 C 0.129 3.871 7 C -0.103 4.103 8 C -0.071 4.071 9 C -0.145 4.145 10 C 0.560 3.440 11 O -0.576 6.576 12 N -0.697 5.697 13 C 0.152 3.848 14 H 0.082 0.918 15 C -0.139 4.139 16 C 0.158 3.842 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.151 3.849 27 H 0.054 0.946 28 C -0.147 4.147 29 C -0.029 4.029 30 C -0.131 4.131 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.413 0.587 39 H 0.065 0.935 40 H 0.070 0.930 41 H -0.015 1.015 42 H 0.078 0.922 43 H 0.246 0.754 44 H 0.035 0.965 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 28.927 4.751 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.029 4.029 3 C -0.199 4.199 4 C -0.027 4.027 5 N -0.221 5.221 6 C 0.007 3.993 7 C -0.121 4.121 8 C -0.091 4.091 9 C -0.149 4.149 10 C 0.349 3.651 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.047 3.953 14 H 0.100 0.900 15 C -0.179 4.179 16 C 0.032 3.968 17 N -0.338 5.338 18 C -0.355 4.355 19 H 0.104 0.896 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.044 3.956 27 H 0.072 0.928 28 C -0.206 4.206 29 C -0.049 4.049 30 C -0.133 4.133 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.192 0.808 35 H 0.211 0.789 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.251 0.749 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.003 0.997 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.692 28.544 4.673 29.049 hybrid contribution -0.398 -1.458 -0.096 1.515 sum 2.294 27.086 4.576 27.565 Atomic orbital electron populations 1.21016 0.88196 1.04688 1.04225 1.20614 0.98076 0.91739 0.92486 1.22171 0.95390 0.99738 1.02616 1.23687 0.92431 0.96887 0.89699 1.68133 1.40639 0.98251 1.15077 1.19288 0.89988 0.93357 0.96619 1.20888 1.01386 0.89480 1.00371 1.21130 0.92170 0.99524 0.96281 1.19851 0.94670 0.92345 1.07994 1.18491 0.86584 0.84554 0.75519 1.90748 1.15062 1.88002 1.51867 1.45760 1.10798 1.04483 1.73818 1.21766 0.95633 0.81452 0.96486 0.89979 1.23208 1.01244 0.97004 0.96399 1.21665 0.89425 0.90631 0.95073 1.44708 1.44460 1.08842 1.35833 1.19354 1.15376 0.87922 1.12889 0.89634 1.25619 1.00357 1.01641 0.98578 1.70037 1.36421 1.31066 1.22579 0.85145 0.78139 0.79159 0.76843 1.20631 1.22423 1.20089 1.21192 0.96779 0.86485 0.91141 0.92831 1.22129 1.00636 1.01157 0.96715 1.21552 1.00809 0.90061 0.92433 1.18844 0.94327 0.94500 1.05598 0.89013 0.88163 0.91236 0.80782 0.78947 0.82622 0.82659 0.74902 0.91586 0.91142 0.99663 0.90422 0.94462 0.94541 0.93261 0.91105 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.59 71.24 0.68 -0.60 16 2 C -0.02 -0.32 5.92 -19.60 -0.12 -0.43 16 3 C -0.18 -1.93 9.72 22.14 0.22 -1.71 16 4 C 0.14 1.86 11.14 85.04 0.95 2.81 16 5 N -0.51 -10.17 10.33 -188.46 -1.95 -12.12 16 6 C 0.13 2.77 6.61 40.37 0.27 3.04 16 7 C -0.10 -1.98 9.95 22.30 0.22 -1.76 16 8 C -0.07 -1.36 9.44 22.27 0.21 -1.15 16 9 C -0.15 -3.49 5.87 -20.10 -0.12 -3.61 16 10 C 0.56 16.57 7.77 86.76 0.67 17.24 16 11 O -0.58 -21.22 15.99 -3.89 -0.06 -21.29 16 12 N -0.70 -19.50 5.14 -439.83 -2.26 -21.76 16 13 C 0.15 5.40 2.80 46.18 0.13 5.53 16 14 H 0.08 3.17 7.33 -2.39 -0.02 3.15 16 15 C -0.14 -5.53 6.77 31.99 0.22 -5.31 16 16 C 0.16 7.90 5.89 86.85 0.51 8.41 16 17 N -0.61 -30.48 3.13 -668.28 -2.09 -32.57 16 18 C -0.23 -12.24 9.89 84.03 0.83 -11.41 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 21 N -0.95 -56.55 10.09 21.65 0.22 -56.33 16 22 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.15 5.81 3.48 45.34 0.16 5.97 16 27 H 0.05 1.91 7.71 -2.39 -0.02 1.89 16 28 C -0.15 -5.22 9.13 71.98 0.66 -4.56 16 29 C -0.03 -0.66 8.88 22.82 0.20 -0.46 16 30 C -0.13 -2.69 5.74 -21.29 -0.12 -2.81 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.56 8.10 -2.38 -0.02 0.54 16 33 H 0.07 0.86 6.52 -2.39 -0.02 0.85 16 34 H 0.17 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.16 2.17 6.35 -2.91 -0.02 2.15 16 38 H 0.41 9.06 6.34 -92.71 -0.59 8.47 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.08 4.41 5.88 -2.39 -0.01 4.39 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.14 3.24 6.00 -2.91 -0.02 3.22 16 Total: -1.00 -73.16 381.04 2.33 -70.83 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.41 Total: 20.27 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.03 Total: 5.77 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -6.08 Total: -122.78 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.06 Total: -21.29 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.16 2.33 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088593178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.734 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds