Wall clock time and date at job start Tue Mar 31 2020 22:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36543 * 120.88074 * 2 1 4 4 C 1.40234 * 119.81791 * 180.26486 * 3 2 1 5 5 C 1.48277 * 119.24144 * 179.69180 * 4 3 2 6 6 O 1.21504 * 120.00008 * 359.72951 * 5 4 3 7 7 N 1.34774 * 119.99992 * 179.73056 * 5 4 3 8 8 C 1.46504 * 119.99811 * 179.97438 * 7 5 4 9 9 H 1.08996 * 110.63797 * 323.31096 * 8 7 5 10 10 C 1.55155 * 110.71889 * 86.45186 * 8 7 5 11 11 C 1.54912 * 101.57968 * 154.04276 * 10 8 7 12 12 N 1.47426 * 104.83261 * 322.99067 * 11 10 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 10 14 14 H 1.08001 * 120.00063 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99930 * 0.02562 * 13 12 11 16 16 N 1.31617 * 120.00219 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46974 * 59.99759 * 17 15 13 19 19 H 1.48495 * 109.47103 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46839 * 299.99961 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 10 22 22 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 23 23 C 1.53001 * 109.88112 * 118.35785 * 21 12 11 24 24 N 1.31908 * 121.52078 * 359.41382 * 4 3 2 25 25 C 1.33232 * 121.29489 * 0.27790 * 24 4 3 26 26 C 1.40839 * 120.98526 * 180.02562 * 25 24 4 27 27 C 1.35990 * 119.73573 * 179.97438 * 26 25 24 28 28 C 1.39435 * 121.09012 * 359.97438 * 27 26 25 29 29 C 1.36130 * 120.92153 * 0.02562 * 28 27 26 30 30 C 1.40432 * 119.64795 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47274 * 270.33362 * 1 2 3 32 32 H 1.08999 * 109.46753 * 30.32755 * 1 2 3 33 33 H 1.08996 * 109.47184 * 150.32858 * 1 2 3 34 34 H 1.07998 * 120.09079 * 359.97297 * 3 2 1 35 35 H 0.96999 * 120.00347 * 359.97438 * 7 5 4 36 36 H 1.08997 * 111.00368 * 35.97468 * 10 8 7 37 37 H 1.08992 * 111.03872 * 272.12933 * 10 8 7 38 38 H 1.09002 * 110.36496 * 204.15483 * 11 10 8 39 39 H 1.08997 * 110.36790 * 81.83118 * 11 10 8 40 40 H 0.97004 * 120.00482 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.46793 * 61.45719 * 23 21 12 42 42 H 1.09005 * 109.46593 * 181.45282 * 23 21 12 43 43 H 1.08995 * 109.46984 * 301.45265 * 23 21 12 44 44 H 1.07999 * 120.12992 * 359.95883 * 26 25 24 45 45 H 1.08004 * 119.45364 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.54301 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.17840 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 -0.0056 5 6 4.3581 2.4260 -0.0125 6 8 3.7561 3.4815 -0.0182 7 7 5.7058 2.4189 -0.0125 8 6 6.4450 3.6838 -0.0199 9 1 5.9326 4.4246 -0.6336 10 6 6.6444 4.2114 1.4255 11 6 7.9265 5.0669 1.2701 12 7 8.7629 4.3226 0.3110 13 6 10.1249 4.4128 0.2020 14 1 10.6478 3.8234 -0.5367 15 6 10.8336 5.2619 1.0409 16 7 10.1965 5.9798 1.9415 17 14 12.6915 5.3855 0.8918 18 1 13.0488 5.8492 -0.4730 19 1 13.2051 6.3540 1.8934 20 1 13.2975 4.0519 1.1359 21 6 7.8918 3.4722 -0.5134 22 1 8.1748 2.4263 -0.3945 23 6 8.0053 3.8812 -1.9833 24 7 4.2786 0.0088 0.0005 25 6 3.6481 -1.1648 0.0068 26 6 4.3686 -2.3749 0.0139 27 6 3.6990 -3.5586 0.0208 28 6 2.3052 -3.5974 0.0215 29 6 1.5735 -2.4495 0.0148 30 6 2.2292 -1.2077 0.0065 31 1 -0.3634 0.0060 1.0277 32 1 -0.3633 0.8870 -0.5189 33 1 -0.3633 -0.8929 -0.5087 34 1 1.6837 2.1162 -0.0004 35 1 6.1864 1.5763 -0.0076 36 1 6.8055 3.3893 2.1228 37 1 5.8001 4.8260 1.7377 38 1 8.4388 5.1600 2.2277 39 1 7.6796 6.0518 0.8737 40 1 10.6917 6.5734 2.5275 41 1 9.0322 3.7415 -2.3210 42 1 7.3379 3.2640 -2.5847 43 1 7.7267 4.9294 -2.0913 44 1 5.4485 -2.3629 0.0137 45 1 4.2561 -4.4838 0.0267 46 1 1.7991 -4.5514 0.0275 47 1 0.4944 -2.4936 0.0159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088672812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:06 Heat of formation + Delta-G solvation = 44.568752 kcal Electronic energy + Delta-G solvation = -28620.061184 eV Core-core repulsion = 24768.226059 eV Total energy + Delta-G solvation = -3851.835125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33933 -39.57921 -37.73827 -36.95942 -35.14306 -33.95647 -32.02678 -31.00220 -30.67641 -30.31879 -28.61638 -28.13307 -25.69174 -24.12229 -23.95105 -23.75792 -21.77994 -20.65181 -20.05992 -19.72594 -18.32014 -18.02489 -17.19980 -16.73084 -15.89428 -15.57749 -15.30104 -15.02484 -14.70439 -14.53787 -14.29825 -13.99382 -13.90021 -13.66124 -13.50015 -13.38500 -13.13680 -12.74441 -12.53703 -12.11447 -12.10122 -11.97325 -11.83748 -11.71720 -11.53057 -11.11406 -10.83205 -10.81248 -10.52267 -10.51864 -10.44339 -10.16587 -10.09818 -9.75249 -9.62523 -9.51004 -9.10824 -8.66032 -8.59743 -8.51076 -6.84771 -5.62883 -3.05540 -0.08274 0.39773 1.62527 2.23991 3.16276 3.18422 3.42030 3.46277 3.47611 3.86248 3.87416 4.14249 4.36132 4.44384 4.49412 4.53384 4.79087 4.83264 4.95469 5.04381 5.15222 5.16074 5.29055 5.37948 5.45073 5.55418 5.57731 5.65716 5.66833 5.69258 5.75894 5.85028 6.02396 6.08953 6.16511 6.17423 6.28734 6.35298 6.37938 6.48124 6.56378 6.64639 6.75104 6.89479 7.12624 7.41885 7.55053 7.64787 7.79403 7.87825 8.33271 8.38532 9.23154 9.84039 10.48174 11.40600 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002419 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.038574 B =11570.920628 C =12460.048598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.128 4.128 4 C 0.128 3.872 5 C 0.565 3.435 6 O -0.533 6.533 7 N -0.691 5.691 8 C 0.133 3.867 9 H 0.093 0.907 10 C -0.153 4.153 11 C 0.154 3.846 12 N -0.595 5.595 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.156 3.844 22 H 0.038 0.962 23 C -0.155 4.155 24 N -0.447 5.447 25 C 0.127 3.873 26 C -0.083 4.083 27 C -0.106 4.106 28 C -0.110 4.110 29 C -0.103 4.103 30 C -0.088 4.088 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 -18.794 -3.931 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.149 4.149 4 C -0.025 4.025 5 C 0.349 3.651 6 O -0.409 6.409 7 N -0.340 5.340 8 C 0.028 3.972 9 H 0.111 0.889 10 C -0.192 4.192 11 C 0.029 3.971 12 N -0.320 5.320 13 C -0.348 4.348 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.048 3.952 22 H 0.055 0.945 23 C -0.215 4.215 24 N -0.159 5.159 25 C 0.004 3.996 26 C -0.102 4.102 27 C -0.126 4.126 28 C -0.128 4.128 29 C -0.121 4.121 30 C -0.090 4.090 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.367 -17.946 -3.824 26.679 hybrid contribution 0.352 -0.330 -0.136 0.501 sum -19.015 -18.276 -3.960 26.670 Atomic orbital electron populations 1.20873 0.89476 1.03768 1.03335 1.20135 0.96900 0.91663 0.95326 1.21635 0.93679 0.99710 0.99870 1.21445 0.91712 0.92243 0.97127 1.17849 0.82677 0.87083 0.77509 1.90778 1.68726 1.31019 1.50397 1.45948 1.05486 1.10736 1.71875 1.22241 0.92036 0.84307 0.98573 0.88868 1.23409 1.00453 1.00555 0.94829 1.21945 0.86751 0.91011 0.97421 1.44484 1.02128 1.47961 1.37429 1.18978 0.80436 1.20363 1.15017 0.90499 1.24783 0.98170 0.99028 0.98621 1.69788 1.33453 1.30221 1.23527 0.86159 0.84880 0.77322 0.77154 1.21248 1.21613 1.21193 1.20981 0.88185 0.95154 0.90923 0.94467 1.22240 1.01008 1.00848 0.97378 1.67853 1.39857 0.97374 1.10793 1.18854 0.89746 0.92056 0.98951 1.20928 1.00756 0.89931 0.98590 1.20940 0.94453 0.98124 0.99058 1.20991 0.94181 0.98551 0.99109 1.21018 1.00141 0.91108 0.99851 1.18837 0.93948 0.94335 1.01910 0.90001 0.90311 0.90674 0.83151 0.75528 0.91924 0.91851 0.87349 0.96705 0.93659 0.92634 0.94316 0.92907 0.84231 0.85076 0.85422 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.59 36.01 0.35 -0.36 16 2 C -0.03 -0.31 5.92 -104.30 -0.62 -0.93 16 3 C -0.13 -1.54 9.23 -39.44 -0.36 -1.90 16 4 C 0.13 1.83 6.75 -82.96 -0.56 1.27 16 5 C 0.57 9.38 7.81 -12.13 -0.09 9.28 16 6 O -0.53 -10.10 16.01 5.36 0.09 -10.01 16 7 N -0.69 -11.45 5.19 -52.83 -0.27 -11.72 16 8 C 0.13 2.53 2.75 -66.09 -0.18 2.35 16 9 H 0.09 1.86 7.40 -51.93 -0.38 1.47 16 10 C -0.15 -3.14 6.77 -24.58 -0.17 -3.31 16 11 C 0.15 3.81 5.88 -2.53 -0.01 3.79 16 12 N -0.59 -15.05 3.13 -162.56 -0.51 -15.56 16 13 C -0.22 -6.03 9.86 -15.06 -0.15 -6.18 16 14 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 16 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 17 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.16 3.23 3.48 -66.95 -0.23 2.99 16 22 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16 23 C -0.16 -2.96 9.14 37.16 0.34 -2.62 16 24 N -0.45 -6.13 9.47 -7.54 -0.07 -6.20 16 25 C 0.13 1.52 6.61 -84.85 -0.56 0.96 16 26 C -0.08 -0.80 9.99 -39.41 -0.39 -1.20 16 27 C -0.11 -0.77 9.94 -39.94 -0.40 -1.16 16 28 C -0.11 -0.72 9.95 -39.89 -0.40 -1.12 16 29 C -0.10 -0.77 9.31 -39.51 -0.37 -1.14 16 30 C -0.09 -0.91 5.75 -106.71 -0.61 -1.52 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.07 0.33 6.51 -51.93 -0.34 0.00 16 34 H 0.15 1.70 7.60 -52.49 -0.40 1.30 16 35 H 0.41 6.27 7.63 -40.82 -0.31 5.96 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.11 3.00 5.89 -51.93 -0.31 2.69 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.65 6.44 -52.49 -0.34 0.31 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -32.25 383.41 -10.64 -42.89 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.66 Total: 5.30 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -4.52 Total: -1.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.29 Total: -59.80 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.25 -10.64 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088672812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.460 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds