Wall clock time and date at job start Tue Mar 31 2020 22:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36543 * 120.88074 * 2 1 4 4 C 1.40234 * 119.81791 * 180.26486 * 3 2 1 5 5 C 1.48277 * 119.24144 * 179.69180 * 4 3 2 6 6 O 1.21504 * 120.00008 * 359.72951 * 5 4 3 7 7 N 1.34774 * 119.99992 * 179.73056 * 5 4 3 8 8 C 1.46504 * 119.99811 * 179.97438 * 7 5 4 9 9 H 1.08996 * 110.63797 * 323.31096 * 8 7 5 10 10 C 1.55155 * 110.71889 * 86.45186 * 8 7 5 11 11 C 1.54912 * 101.57968 * 154.04276 * 10 8 7 12 12 N 1.47426 * 104.83261 * 322.99067 * 11 10 8 13 13 C 1.36941 * 125.64875 * 203.86480 * 12 11 10 14 14 H 1.08001 * 120.00063 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99930 * 0.02562 * 13 12 11 16 16 N 1.31617 * 120.00219 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46974 * 59.99759 * 17 15 13 19 19 H 1.48495 * 109.47103 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46839 * 299.99961 * 17 15 13 21 21 C 1.47024 * 108.70449 * 24.12870 * 12 11 10 22 22 H 1.09002 * 109.88101 * 239.52444 * 21 12 11 23 23 C 1.53001 * 109.88112 * 118.35785 * 21 12 11 24 24 N 1.31908 * 121.52078 * 359.41382 * 4 3 2 25 25 C 1.33232 * 121.29489 * 0.27790 * 24 4 3 26 26 C 1.40839 * 120.98526 * 180.02562 * 25 24 4 27 27 C 1.35990 * 119.73573 * 179.97438 * 26 25 24 28 28 C 1.39435 * 121.09012 * 359.97438 * 27 26 25 29 29 C 1.36130 * 120.92153 * 0.02562 * 28 27 26 30 30 C 1.40432 * 119.64795 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47274 * 270.33362 * 1 2 3 32 32 H 1.08999 * 109.46753 * 30.32755 * 1 2 3 33 33 H 1.08996 * 109.47184 * 150.32858 * 1 2 3 34 34 H 1.07998 * 120.09079 * 359.97297 * 3 2 1 35 35 H 0.96999 * 120.00347 * 359.97438 * 7 5 4 36 36 H 1.08997 * 111.00368 * 35.97468 * 10 8 7 37 37 H 1.08992 * 111.03872 * 272.12933 * 10 8 7 38 38 H 1.09002 * 110.36496 * 204.15483 * 11 10 8 39 39 H 1.08997 * 110.36790 * 81.83118 * 11 10 8 40 40 H 0.97004 * 120.00482 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.46793 * 61.45719 * 23 21 12 42 42 H 1.09005 * 109.46593 * 181.45282 * 23 21 12 43 43 H 1.08995 * 109.46984 * 301.45265 * 23 21 12 44 44 H 1.07999 * 120.12992 * 359.95883 * 26 25 24 45 45 H 1.08004 * 119.45364 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.54301 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.17840 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 -0.0056 5 6 4.3581 2.4260 -0.0125 6 8 3.7561 3.4815 -0.0182 7 7 5.7058 2.4189 -0.0125 8 6 6.4450 3.6838 -0.0199 9 1 5.9326 4.4246 -0.6336 10 6 6.6444 4.2114 1.4255 11 6 7.9265 5.0669 1.2701 12 7 8.7629 4.3226 0.3110 13 6 10.1249 4.4128 0.2020 14 1 10.6478 3.8234 -0.5367 15 6 10.8336 5.2619 1.0409 16 7 10.1965 5.9798 1.9415 17 14 12.6915 5.3855 0.8918 18 1 13.0488 5.8492 -0.4730 19 1 13.2051 6.3540 1.8934 20 1 13.2975 4.0519 1.1359 21 6 7.8918 3.4722 -0.5134 22 1 8.1748 2.4263 -0.3945 23 6 8.0053 3.8812 -1.9833 24 7 4.2786 0.0088 0.0005 25 6 3.6481 -1.1648 0.0068 26 6 4.3686 -2.3749 0.0139 27 6 3.6990 -3.5586 0.0208 28 6 2.3052 -3.5974 0.0215 29 6 1.5735 -2.4495 0.0148 30 6 2.2292 -1.2077 0.0065 31 1 -0.3634 0.0060 1.0277 32 1 -0.3633 0.8870 -0.5189 33 1 -0.3633 -0.8929 -0.5087 34 1 1.6837 2.1162 -0.0004 35 1 6.1864 1.5763 -0.0076 36 1 6.8055 3.3893 2.1228 37 1 5.8001 4.8260 1.7377 38 1 8.4388 5.1600 2.2277 39 1 7.6796 6.0518 0.8737 40 1 10.6917 6.5734 2.5275 41 1 9.0322 3.7415 -2.3210 42 1 7.3379 3.2640 -2.5847 43 1 7.7267 4.9294 -2.0913 44 1 5.4485 -2.3629 0.0137 45 1 4.2561 -4.4838 0.0267 46 1 1.7991 -4.5514 0.0275 47 1 0.4944 -2.4936 0.0159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088672812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:06 Heat of formation + Delta-G solvation = 25.310463 kcal Electronic energy + Delta-G solvation = -28620.896286 eV Core-core repulsion = 24768.226059 eV Total energy + Delta-G solvation = -3852.670227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17473 -40.89542 -39.27885 -37.85145 -35.99155 -35.51068 -33.84569 -32.13647 -31.82870 -31.31765 -30.41763 -28.77599 -27.07821 -25.93564 -25.25770 -24.54015 -22.69056 -22.11308 -21.56461 -21.28236 -19.13568 -19.03788 -18.66089 -18.08874 -17.42922 -16.64934 -16.43143 -16.38109 -15.80939 -15.71298 -15.45567 -15.33113 -15.09074 -14.97208 -14.43363 -14.30571 -14.03965 -13.96242 -13.89354 -13.75492 -13.26437 -12.99628 -12.96055 -12.75754 -12.68443 -12.63654 -12.59422 -12.34275 -12.26718 -12.14492 -12.02878 -11.59300 -11.51043 -11.40010 -11.20127 -10.72937 -10.62211 -10.16083 -9.82202 -9.20997 -8.91229 -7.74995 -5.20255 -0.87210 -0.36193 0.90245 1.33220 1.47909 1.51230 1.57320 1.90815 2.19523 2.51500 2.92025 3.05671 3.35286 3.47608 3.52639 3.63736 3.74502 3.80526 3.84710 3.91918 4.13324 4.17273 4.21742 4.31869 4.46857 4.48676 4.50742 4.58009 4.61495 4.67577 4.76352 4.77736 4.89869 5.00311 5.01435 5.02668 5.07952 5.11517 5.14653 5.30911 5.40858 5.45900 5.48671 5.52435 5.54168 5.58338 5.78457 5.86655 6.29312 6.31859 6.66886 7.03805 7.10539 7.77677 8.41764 9.27140 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002419 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.038574 B =11570.920628 C =12460.048598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.150 4.150 4 C 0.104 3.896 5 C 0.567 3.433 6 O -0.562 6.562 7 N -0.686 5.686 8 C 0.150 3.850 9 H 0.086 0.914 10 C -0.139 4.139 11 C 0.160 3.840 12 N -0.613 5.613 13 C -0.229 4.229 14 H 0.085 0.915 15 C -0.069 4.069 16 N -0.951 5.951 17 Si 0.980 3.020 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.152 3.848 22 H 0.047 0.953 23 C -0.146 4.146 24 N -0.465 5.465 25 C 0.100 3.900 26 C -0.110 4.110 27 C -0.092 4.092 28 C -0.102 4.102 29 C -0.103 4.103 30 C -0.100 4.100 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.078 0.922 39 H -0.010 1.010 40 H 0.247 0.753 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.138 0.862 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.041 -22.601 -4.836 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.171 4.171 4 C -0.048 4.048 5 C 0.353 3.647 6 O -0.440 6.440 7 N -0.336 5.336 8 C 0.044 3.956 9 H 0.104 0.896 10 C -0.178 4.178 11 C 0.034 3.966 12 N -0.338 5.338 13 C -0.358 4.358 14 H 0.103 0.897 15 C -0.261 4.261 16 N -0.601 5.601 17 Si 0.809 3.191 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.202 1.202 21 C 0.045 3.955 22 H 0.064 0.936 23 C -0.205 4.205 24 N -0.177 5.177 25 C -0.023 4.023 26 C -0.129 4.129 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.102 4.102 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.167 0.833 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.008 0.992 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.156 0.844 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.325 -21.795 -4.757 30.861 hybrid contribution 0.856 0.621 0.133 1.065 sum -20.470 -21.174 -4.624 29.812 Atomic orbital electron populations 1.21006 0.86491 1.05229 1.04594 1.20555 0.98821 0.90638 0.92843 1.21664 0.92857 1.00756 1.01775 1.21083 0.92365 0.91272 1.00099 1.18249 0.82343 0.87901 0.76212 1.90746 1.69202 1.32429 1.51662 1.45777 1.05674 1.09919 1.72249 1.21857 0.91405 0.85322 0.96973 0.89579 1.23210 0.98487 0.99971 0.96162 1.21660 0.88239 0.90872 0.95790 1.44713 1.02204 1.48467 1.38437 1.19359 0.81682 1.19998 1.14735 0.89742 1.25631 1.02527 0.99227 0.98706 1.70037 1.34735 1.30956 1.24373 0.85120 0.79704 0.77312 0.76988 1.20502 1.22229 1.20184 1.21151 0.88248 0.94719 0.91385 0.93576 1.22112 1.01374 1.00629 0.96370 1.67732 1.40659 0.97894 1.11462 1.19287 0.91163 0.91963 0.99924 1.21086 1.01032 0.90210 1.00534 1.21367 0.95294 0.98204 0.96284 1.21483 0.93856 0.99898 0.96769 1.21406 1.01829 0.90008 0.98887 1.19151 0.93431 0.95837 1.01831 0.88573 0.89745 0.88369 0.83335 0.74735 0.91692 0.91206 0.90395 0.99227 0.94377 0.93156 0.91385 0.94099 0.84390 0.82199 0.81711 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.59 71.24 0.68 -0.37 16 2 C -0.02 -0.37 5.92 -19.66 -0.12 -0.49 16 3 C -0.15 -3.62 9.23 22.36 0.21 -3.42 16 4 C 0.10 3.05 6.75 42.29 0.29 3.33 16 5 C 0.57 19.42 7.81 86.91 0.68 20.10 16 6 O -0.56 -22.04 16.01 -3.73 -0.06 -22.10 16 7 N -0.69 -23.17 5.19 -439.36 -2.28 -25.45 16 8 C 0.15 5.82 2.75 46.18 0.13 5.94 16 9 H 0.09 3.51 7.40 -2.39 -0.02 3.49 16 10 C -0.14 -5.90 6.77 31.99 0.22 -5.68 16 11 C 0.16 8.30 5.88 86.86 0.51 8.81 16 12 N -0.61 -31.82 3.13 -668.23 -2.09 -33.91 16 13 C -0.23 -12.77 9.86 84.03 0.83 -11.94 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 15 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 16 N -0.95 -57.56 10.09 21.65 0.22 -57.34 16 17 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.15 6.34 3.48 45.34 0.16 6.50 16 22 H 0.05 1.87 7.70 -2.39 -0.02 1.86 16 23 C -0.15 -5.51 9.14 71.98 0.66 -4.85 16 24 N -0.46 -13.00 9.47 -177.77 -1.68 -14.68 16 25 C 0.10 2.34 6.61 40.49 0.27 2.60 16 26 C -0.11 -1.98 9.99 22.38 0.22 -1.75 16 27 C -0.09 -1.01 9.94 22.04 0.22 -0.79 16 28 C -0.10 -0.86 9.95 22.07 0.22 -0.64 16 29 C -0.10 -1.12 9.31 22.31 0.21 -0.91 16 30 C -0.10 -1.86 5.75 -21.22 -0.12 -1.99 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.10 0.44 6.51 -2.39 -0.02 0.42 16 34 H 0.15 3.48 7.60 -2.91 -0.02 3.46 16 35 H 0.42 12.95 7.63 -92.71 -0.71 12.24 16 36 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.08 4.55 5.89 -2.39 -0.01 4.53 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 41 H 0.05 1.94 8.02 -2.39 -0.02 1.92 16 42 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 47 H 0.16 0.70 6.44 -2.91 -0.02 0.68 16 Total: -1.00 -73.41 383.41 2.13 -71.27 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.29 Total: 23.13 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.72 Total: 11.01 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -5.84 Total: -131.39 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.41 2.13 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088672812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.583 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds