Wall clock time and date at job start Tue Mar 31 2020 22:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36614 * 120.92248 * 2 1 4 4 C 1.39266 * 119.90615 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.77381 * 359.97438 * 4 3 2 6 6 C 1.33617 * 121.39144 * 359.97438 * 5 4 3 7 7 C 1.40769 * 120.83416 * 180.02562 * 6 5 4 8 8 C 1.35698 * 120.11223 * 179.67833 * 7 6 5 9 9 C 1.40641 * 120.92281 * 0.56713 * 8 7 6 10 10 C 1.47768 * 119.80071 * 179.73246 * 9 8 7 11 11 O 1.21559 * 119.99979 * 179.72497 * 10 9 8 12 12 N 1.34771 * 119.99783 * 359.72617 * 10 9 8 13 13 C 1.46501 * 120.00020 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.47405 * 179.97438 * 13 12 10 15 15 C 1.53781 * 113.61492 * 174.99701 * 14 13 12 16 16 C 1.53781 * 87.08070 * 140.06794 * 15 14 13 17 17 N 1.46506 * 113.61361 * 89.11956 * 16 15 14 18 18 C 1.36932 * 119.99948 * 156.53166 * 17 16 15 19 19 H 1.08003 * 120.00194 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99941 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47283 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46791 * 120.00116 * 22 20 18 25 25 H 1.48492 * 109.47273 * 240.00144 * 22 20 18 26 26 C 1.53773 * 87.17302 * 334.52628 * 16 15 14 27 27 C 1.38548 * 120.39600 * 359.45726 * 9 8 7 28 28 C 1.40189 * 119.40310 * 0.24836 * 27 9 8 29 29 H 1.09001 * 109.47156 * 270.01750 * 1 2 3 30 30 H 1.08998 * 109.47349 * 30.01791 * 1 2 3 31 31 H 1.09007 * 109.47417 * 150.02190 * 1 2 3 32 32 H 1.08001 * 120.04219 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.11410 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.94254 * 359.97438 * 7 6 5 35 35 H 1.07997 * 119.54007 * 180.30062 * 8 7 6 36 36 H 0.96997 * 120.00572 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46995 * 59.99707 * 13 12 10 38 38 H 1.08998 * 109.46746 * 299.99904 * 13 12 10 39 39 H 1.08998 * 112.84975 * 43.80400 * 14 13 12 40 40 H 1.09001 * 113.61537 * 25.52248 * 15 14 13 41 41 H 1.08998 * 113.61680 * 254.61401 * 15 14 13 42 42 H 1.09002 * 113.61408 * 219.93560 * 16 15 14 43 43 H 0.96997 * 119.99707 * 336.52824 * 17 16 15 44 44 H 0.97000 * 119.99576 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.61678 * 140.01927 * 26 16 15 46 46 H 1.09000 * 113.61916 * 270.92600 * 26 16 15 47 47 H 1.07998 * 120.29937 * 180.27751 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0006 6 6 3.6479 -1.1611 0.0005 7 6 4.3795 -2.3637 0.0010 8 6 3.7305 -3.5554 0.0086 9 6 2.3253 -3.6131 0.0041 10 6 1.6441 -4.9245 0.0066 11 8 0.4297 -4.9786 0.0078 12 7 2.3693 -6.0605 0.0076 13 6 1.6941 -7.3606 0.0095 14 6 2.7390 -8.4780 0.0096 15 6 2.1346 -9.8866 0.1345 16 6 3.1819 -10.3417 -0.8955 17 7 4.4458 -10.7757 -0.2948 18 6 5.2699 -11.6307 -0.9766 19 1 4.9880 -11.9855 -1.9570 20 6 6.4676 -12.0414 -0.4077 21 7 6.8109 -11.6094 0.7872 22 14 7.5915 -13.2084 -1.3375 23 1 6.9810 -13.5438 -2.6490 24 1 8.9083 -12.5578 -1.5568 25 1 7.7790 -14.4508 -0.5460 26 6 3.2061 -8.8892 -1.3996 27 6 1.5758 -2.4479 0.0031 28 6 2.2307 -1.2084 0.0013 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6848 2.1162 -0.0004 33 1 4.1436 2.0814 -0.0001 34 1 5.4592 -2.3379 0.0001 35 1 4.3010 -4.4724 0.0138 36 1 3.3383 -6.0173 0.0063 37 1 1.0701 -7.4472 -0.8800 38 1 1.0711 -7.4450 0.9000 39 1 3.5582 -8.2914 0.7040 40 1 1.1085 -9.9550 -0.2268 41 1 2.2683 -10.3334 1.1197 42 1 2.7953 -11.0514 -1.6270 43 1 4.6987 -10.4572 0.5858 44 1 7.6477 -11.8968 1.1849 45 1 4.2042 -8.5311 -1.6520 46 1 2.4724 -8.6853 -2.1795 47 1 0.4968 -2.4940 0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091047274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:19 Heat of formation + Delta-G solvation = 44.022270 kcal Electronic energy + Delta-G solvation = -27484.739615 eV Core-core repulsion = 23632.880793 eV Total energy + Delta-G solvation = -3851.858823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.36859 -39.89411 -38.57322 -37.00140 -35.15997 -34.72790 -33.25276 -31.29832 -30.73094 -30.11882 -28.42425 -27.41374 -25.10018 -24.78027 -23.99914 -23.60608 -21.83444 -21.41927 -21.12007 -18.90646 -18.25355 -18.07668 -17.27853 -16.99769 -16.27690 -15.87261 -15.47432 -15.03537 -14.85867 -14.68028 -14.54188 -14.28960 -14.12805 -13.92557 -13.71173 -13.52803 -13.30356 -13.21262 -12.94493 -12.89991 -12.34202 -12.10874 -11.97163 -11.91776 -11.77595 -11.40543 -11.06509 -10.87915 -10.59715 -10.52601 -10.27905 -10.14387 -9.89537 -9.85950 -9.71936 -9.51073 -9.25156 -9.03922 -8.91135 -8.57320 -7.02582 -5.83343 -3.12353 -0.14543 0.29928 1.52319 2.12161 3.05407 3.10151 3.39930 3.46056 3.48074 3.74895 3.87199 4.07555 4.18862 4.34027 4.46201 4.53605 4.63600 4.70330 4.80295 4.94451 5.00923 5.03702 5.06075 5.08260 5.19800 5.26555 5.42894 5.48994 5.54334 5.58359 5.59663 5.66007 5.67580 5.82870 5.89405 5.91404 5.97002 6.07257 6.11791 6.18518 6.33041 6.34579 6.39638 6.56019 6.71592 6.86504 7.01342 7.41386 7.51488 7.67400 8.08077 8.35851 9.46710 10.04039 10.38230 11.39109 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.001942 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.594903 B =14417.989656 C =15706.092535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.012 4.012 3 C -0.187 4.187 4 C 0.143 3.857 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.096 4.096 8 C -0.074 4.074 9 C -0.132 4.132 10 C 0.555 3.445 11 O -0.543 6.543 12 N -0.716 5.716 13 C 0.131 3.869 14 C -0.121 4.121 15 C -0.147 4.147 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.169 4.169 27 C -0.029 4.029 28 C -0.114 4.114 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 26.254 -0.779 28.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.207 4.207 4 C -0.028 4.028 5 N -0.190 5.190 6 C 0.025 3.975 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.135 4.135 10 C 0.342 3.658 11 O -0.421 6.421 12 N -0.367 5.367 13 C 0.008 3.992 14 C -0.139 4.139 15 C -0.186 4.186 16 C 0.055 3.945 17 N -0.345 5.345 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.210 4.210 27 C -0.048 4.048 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.611 25.908 -0.892 28.405 hybrid contribution 0.470 -0.349 -0.115 0.597 sum -11.141 25.560 -1.007 27.900 Atomic orbital electron populations 1.20954 0.89684 1.04014 1.03547 1.20262 0.96844 0.91996 0.92876 1.21776 0.95636 0.98821 1.04472 1.23015 0.91529 0.96514 0.91792 1.68086 1.39890 0.97708 1.13333 1.19017 0.89544 0.92628 0.96301 1.20717 1.00797 0.89685 1.00279 1.21026 0.93031 0.98686 0.96688 1.19996 0.93807 0.93724 1.05956 1.18168 0.86938 0.83954 0.76697 1.90763 1.13404 1.87599 1.50379 1.46003 1.10638 1.05925 1.74164 1.21533 0.95233 0.80518 1.01947 1.22771 0.97819 0.93442 0.99901 1.23419 0.99126 0.94639 1.01437 1.21056 0.87271 0.92462 0.93749 1.42174 1.17869 1.54477 1.19939 1.19333 0.98887 1.19311 0.99741 0.90931 1.24769 0.98355 1.00925 0.96883 1.69668 1.24240 1.48422 1.15693 0.86099 0.80708 0.80428 0.78842 1.20493 1.21840 1.21831 1.23939 1.00760 1.01861 0.94403 1.21460 1.00731 0.89691 0.92940 1.18674 0.94114 0.93957 1.04835 0.89798 0.90386 0.90311 0.84338 0.82196 0.83905 0.84567 0.76174 0.91340 0.91578 0.88835 0.90404 0.91280 0.92032 0.78119 0.93484 0.91449 0.91383 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.59 36.00 0.35 -0.33 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.23 9.72 -39.79 -0.39 -1.62 16 4 C 0.14 1.10 11.14 -17.46 -0.19 0.91 16 5 N -0.48 -5.14 10.33 -10.92 -0.11 -5.26 16 6 C 0.15 1.62 6.61 -84.77 -0.56 1.06 16 7 C -0.10 -0.97 9.95 -39.53 -0.39 -1.37 16 8 C -0.07 -0.73 9.44 -39.58 -0.37 -1.10 16 9 C -0.13 -1.49 5.87 -104.98 -0.62 -2.11 16 10 C 0.56 7.34 7.77 -12.37 -0.10 7.25 16 11 O -0.54 -8.76 16.31 5.31 0.09 -8.67 16 12 N -0.72 -8.65 5.50 -61.28 -0.34 -8.99 16 13 C 0.13 1.70 5.52 -4.04 -0.02 1.68 16 14 C -0.12 -1.74 3.64 -89.67 -0.33 -2.06 16 15 C -0.15 -2.28 7.38 -25.92 -0.19 -2.47 16 16 C 0.17 3.18 4.55 -67.12 -0.31 2.87 16 17 N -0.71 -17.06 5.31 -52.64 -0.28 -17.34 16 18 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C -0.17 -2.72 7.45 -25.78 -0.19 -2.91 16 27 C -0.03 -0.30 8.88 -38.74 -0.34 -0.65 16 28 C -0.11 -1.16 5.74 -106.82 -0.61 -1.77 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.08 0.45 6.52 -51.92 -0.34 0.11 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.07 6.35 -52.49 -0.33 0.74 16 36 H 0.40 4.18 6.46 -40.82 -0.26 3.92 16 37 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.19 8.11 -51.93 -0.42 0.76 16 43 H 0.38 9.83 7.90 -40.82 -0.32 9.51 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 46 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 47 H 0.15 1.45 6.00 -52.49 -0.31 1.13 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -33.18 390.34 -10.77 -43.96 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.58 Total: 10.73 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -5.13 Total: -10.51 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.01 Total: -58.38 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.18 -10.77 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091047274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.979 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds