Wall clock time and date at job start Tue Mar 31 2020 22:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30824 * 119.22844 * 2 1 4 4 C 1.33791 * 121.72157 * 179.97438 * 3 2 1 5 5 C 1.40531 * 120.83184 * 180.02562 * 4 3 2 6 6 C 1.36132 * 119.81527 * 179.97438 * 5 4 3 7 7 C 1.39343 * 121.09340 * 359.97438 * 6 5 4 8 8 C 1.36132 * 120.84116 * 0.02859 * 7 6 5 9 9 C 1.40549 * 119.61464 * 359.94759 * 8 7 6 10 10 C 1.40497 * 121.22167 * 180.02562 * 9 8 7 11 11 C 1.39043 * 117.96403 * 180.02562 * 10 9 8 12 12 C 1.47762 * 120.27025 * 180.02562 * 11 10 9 13 13 O 1.21564 * 119.99959 * 186.23105 * 12 11 10 14 14 N 1.34777 * 119.99963 * 6.23723 * 12 11 10 15 15 C 1.46499 * 119.99966 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46836 * 179.97438 * 15 14 12 17 17 C 1.53779 * 113.61143 * 274.12922 * 16 15 14 18 18 C 1.53949 * 87.02079 * 220.05149 * 17 16 15 19 19 N 1.46503 * 113.53956 * 270.81093 * 18 17 16 20 20 C 1.36936 * 120.00089 * 252.49847 * 19 18 17 21 21 H 1.07994 * 120.00343 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99771 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47284 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47602 * 119.99707 * 24 22 20 27 27 H 1.48506 * 109.47295 * 239.99801 * 24 22 20 28 28 C 1.53777 * 87.11368 * 25.36468 * 18 17 16 29 29 H 1.09000 * 109.46955 * 96.96054 * 1 2 3 30 30 H 1.08997 * 109.47296 * 216.96607 * 1 2 3 31 31 H 1.09009 * 109.47380 * 336.96520 * 1 2 3 32 32 H 1.08004 * 120.09262 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.45323 * 180.02562 * 6 5 4 34 34 H 1.08007 * 119.58022 * 180.02562 * 7 6 5 35 35 H 1.07994 * 120.19730 * 179.97438 * 8 7 6 36 36 H 1.07997 * 121.01653 * 0.04753 * 10 9 8 37 37 H 0.96999 * 119.99631 * 359.97438 * 14 12 11 38 38 H 1.09004 * 109.46581 * 299.99173 * 15 14 12 39 39 H 1.08997 * 109.47193 * 59.99642 * 15 14 12 40 40 H 1.09002 * 112.85398 * 45.32785 * 16 15 14 41 41 H 1.09004 * 113.61717 * 334.57476 * 17 16 15 42 42 H 1.09004 * 113.61278 * 105.47026 * 17 16 15 43 43 H 1.09000 * 113.74325 * 139.94430 * 18 17 16 44 44 H 0.96999 * 119.99535 * 72.49284 * 19 18 17 45 45 H 0.97002 * 120.00221 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.61707 * 220.09487 * 28 18 17 47 47 H 1.08999 * 113.61429 * 89.18492 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1999 0.0005 5 6 4.1495 2.4368 0.0010 6 6 5.5103 2.4718 0.0021 7 6 6.2605 1.2975 0.0032 8 6 5.6512 0.0802 0.0026 9 6 4.2476 0.0060 0.0021 10 6 3.5838 -1.2322 0.0021 11 6 2.1934 -1.2266 0.0010 12 6 1.4434 -2.4997 0.0015 13 8 0.2332 -2.4923 -0.1138 14 7 2.1010 -3.6692 0.1298 15 6 1.3574 -4.9315 0.1297 16 6 2.3341 -6.0986 0.2877 17 6 2.9374 -6.5811 -1.0419 18 6 2.7769 -8.0139 -0.5022 19 7 3.9387 -8.4878 0.2541 20 6 4.7708 -9.4305 -0.2884 21 1 4.5704 -9.8249 -1.2735 22 6 5.8719 -9.8791 0.4281 23 7 6.1164 -9.3980 1.6285 24 14 7.0065 -11.1655 -0.3116 25 1 6.5155 -11.5411 -1.6618 26 1 8.3796 -10.6107 -0.4204 27 1 7.0261 -12.3679 0.5596 28 6 1.6447 -7.4698 0.3847 29 1 -0.3633 -0.1245 -1.0201 30 1 -0.3634 -0.8211 0.6180 31 1 -0.3634 0.9458 0.4021 32 1 3.5841 3.3570 0.0015 33 1 6.0170 3.4256 0.0029 34 1 7.3391 1.3539 0.0044 35 1 6.2427 -0.8233 0.0031 36 1 4.1366 -2.1600 0.0032 37 1 3.0666 -3.6750 0.2215 38 1 0.6487 -4.9357 0.9579 39 1 0.8173 -5.0349 -0.8113 40 1 3.0764 -5.9269 1.0672 41 1 2.3113 -6.3682 -1.9084 42 1 3.9755 -6.2810 -1.1847 43 1 2.4390 -8.7299 -1.2514 44 1 4.1185 -8.1338 1.1391 45 1 6.8856 -9.7118 2.1293 46 1 1.6407 -7.8861 1.3921 47 1 0.6644 -7.5003 -0.0909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091055146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:45 Heat of formation + Delta-G solvation = 49.133601 kcal Electronic energy + Delta-G solvation = -27840.918515 eV Core-core repulsion = 23989.281336 eV Total energy + Delta-G solvation = -3851.637179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37263 -39.78895 -38.61415 -37.33292 -34.99173 -33.92298 -33.18859 -32.10257 -30.81768 -30.06502 -28.20913 -27.25817 -25.13578 -24.90421 -23.72193 -22.90764 -22.46471 -21.77188 -21.04693 -18.94096 -18.29671 -17.89406 -17.27290 -17.05759 -15.98140 -15.83823 -15.70355 -15.06810 -14.88154 -14.73309 -14.68385 -14.22902 -14.11440 -13.76011 -13.66271 -13.39893 -13.20100 -13.03702 -12.94512 -12.34355 -12.28589 -12.10074 -11.97966 -11.81047 -11.63342 -11.45315 -11.09542 -10.90718 -10.86656 -10.54406 -10.22077 -10.16728 -10.01478 -9.75050 -9.69490 -9.46528 -9.21247 -8.96016 -8.91733 -8.60953 -7.05640 -5.86214 -3.15317 -0.14035 0.32415 1.50562 2.28108 2.97653 3.00951 3.37490 3.43851 3.45726 3.75602 3.87034 4.16352 4.23346 4.33272 4.43168 4.50993 4.72987 4.75012 4.87734 4.98645 5.00669 5.07550 5.17208 5.28652 5.36418 5.39997 5.51991 5.55305 5.57231 5.63201 5.64756 5.74605 5.80448 5.88275 5.94275 5.98669 6.04410 6.05520 6.15617 6.20968 6.31493 6.35359 6.47360 6.52814 6.67790 6.83302 6.98004 7.33563 7.61135 7.64685 8.03542 8.32951 9.43847 10.01013 10.35144 11.36224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.002325 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.242883 B =12039.302377 C =14067.425951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.212 3.788 3 N -0.483 5.483 4 C 0.150 3.850 5 C -0.103 4.103 6 C -0.089 4.089 7 C -0.125 4.125 8 C -0.083 4.083 9 C -0.119 4.119 10 C -0.011 4.011 11 C -0.187 4.187 12 C 0.560 3.440 13 O -0.530 6.530 14 N -0.717 5.717 15 C 0.131 3.869 16 C -0.121 4.121 17 C -0.169 4.169 18 C 0.167 3.833 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.147 4.147 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 22.984 -2.805 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.059 3.941 3 N -0.192 5.192 4 C 0.029 3.971 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.143 4.143 8 C -0.102 4.102 9 C -0.122 4.122 10 C -0.038 4.038 11 C -0.192 4.192 12 C 0.347 3.653 13 O -0.409 6.409 14 N -0.368 5.368 15 C 0.008 3.992 16 C -0.140 4.140 17 C -0.210 4.210 18 C 0.055 3.945 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.187 4.187 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.089 23.638 -2.978 24.591 hybrid contribution 1.926 -1.279 0.006 2.312 sum -4.163 22.359 -2.972 22.937 Atomic orbital electron populations 1.21106 0.87255 1.03925 1.04443 1.21598 0.97686 0.86193 0.88596 1.67916 1.08211 1.28099 1.15015 1.19022 0.89161 0.93041 0.95899 1.20817 0.94227 0.96383 1.00780 1.21003 0.93688 0.98906 0.97283 1.20957 1.00608 0.92232 1.00486 1.21118 0.92442 0.98962 0.97658 1.18780 0.95043 0.93562 1.04768 1.22067 0.93256 0.97893 0.90566 1.20841 0.94039 0.95420 1.08932 1.17935 0.87167 0.83251 0.76977 1.90732 1.13405 1.86974 1.49770 1.46005 1.11214 1.06019 1.73583 1.21541 0.94443 0.81165 1.02005 1.22727 0.98033 0.93073 1.00136 1.23924 1.00484 1.01653 0.94949 1.21089 0.87884 0.92234 0.93293 1.42181 1.26355 1.47444 1.18455 1.19335 1.03680 1.14259 1.00016 0.90925 1.24766 0.99036 1.00504 0.96593 1.69667 1.30188 1.46417 1.11776 0.86105 0.80670 0.81139 0.78194 1.20479 1.21838 1.21800 1.23438 0.98754 0.94782 1.01702 0.89750 0.87709 0.91237 0.84552 0.85102 0.85187 0.84688 0.83588 0.76468 0.91480 0.91239 0.88903 0.91350 0.91542 0.91912 0.78131 0.93472 0.91264 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.81 36.00 0.32 -0.90 16 2 C 0.21 2.62 6.82 -82.15 -0.56 2.06 16 3 N -0.48 -6.08 10.20 -6.94 -0.07 -6.15 16 4 C 0.15 1.72 6.61 -84.79 -0.56 1.16 16 5 C -0.10 -0.93 9.97 -39.47 -0.39 -1.33 16 6 C -0.09 -0.62 9.94 -39.93 -0.40 -1.02 16 7 C -0.12 -0.88 9.96 -39.93 -0.40 -1.28 16 8 C -0.08 -0.68 9.77 -39.47 -0.39 -1.07 16 9 C -0.12 -1.24 5.74 -106.81 -0.61 -1.85 16 10 C -0.01 -0.11 9.38 -38.43 -0.36 -0.47 16 11 C -0.19 -2.20 5.89 -104.83 -0.62 -2.82 16 12 C 0.56 7.13 7.69 -12.37 -0.10 7.04 16 13 O -0.53 -7.90 13.31 5.31 0.07 -7.83 16 14 N -0.72 -8.27 5.51 -61.28 -0.34 -8.60 16 15 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 16 C -0.12 -1.69 3.62 -89.81 -0.33 -2.01 16 17 C -0.17 -2.65 7.44 -25.83 -0.19 -2.84 16 18 C 0.17 3.12 4.57 -67.03 -0.31 2.82 16 19 N -0.71 -16.82 5.31 -52.55 -0.28 -17.10 16 20 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 24 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.25 5.83 -51.93 -0.30 0.95 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.15 1.10 6.53 -52.49 -0.34 0.75 16 37 H 0.40 3.95 6.58 -40.82 -0.27 3.68 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 0.97 7.92 -51.93 -0.41 0.55 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 44 H 0.38 9.70 7.90 -40.82 -0.32 9.37 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -31.82 388.87 -11.07 -42.90 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.67 Total: 11.11 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -5.35 Total: -10.42 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.04 Total: -58.37 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.07 Total: -7.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.82 -11.07 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091055146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.031 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds