Wall clock time and date at job start Tue Mar 31 2020 22:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39228 * 119.15986 * 2 1 4 4 C 1.36627 * 119.90769 * 180.02562 * 3 2 1 5 5 C 1.40797 * 118.15923 * 359.97438 * 4 3 2 6 6 C 1.40477 * 121.27021 * 180.02562 * 5 4 3 7 7 C 1.36306 * 120.08475 * 179.97438 * 6 5 4 8 8 C 1.38908 * 121.06428 * 0.02562 * 7 6 5 9 9 C 1.38715 * 120.72090 * 359.97438 * 8 7 6 10 10 C 1.47444 * 120.32985 * 179.72829 * 9 8 7 11 11 O 1.21595 * 119.99622 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99942 * 359.97438 * 10 9 8 13 13 C 1.46495 * 119.99583 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46932 * 180.02562 * 13 12 10 15 15 C 1.53784 * 113.60990 * 274.13170 * 14 13 12 16 16 C 1.53957 * 87.02046 * 220.04804 * 15 14 13 17 17 N 1.46501 * 113.53621 * 270.81492 * 16 15 14 18 18 C 1.36934 * 119.99854 * 252.48869 * 17 16 15 19 19 H 1.08003 * 119.99760 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99994 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99987 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48488 * 109.47461 * 120.00090 * 22 20 18 25 25 H 1.48508 * 109.46659 * 240.00025 * 22 20 18 26 26 C 1.53782 * 113.61270 * 176.52886 * 14 13 12 27 27 C 1.41561 * 118.93715 * 359.97438 * 5 4 3 28 28 N 1.31235 * 119.15322 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47489 * 89.99512 * 1 2 3 30 30 H 1.09001 * 109.47533 * 209.99878 * 1 2 3 31 31 H 1.09002 * 109.46721 * 330.00329 * 1 2 3 32 32 H 1.08001 * 120.04445 * 0.04672 * 3 2 1 33 33 H 1.08000 * 120.92429 * 180.02562 * 4 3 2 34 34 H 1.07994 * 119.95275 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.46887 * 179.97438 * 7 6 5 36 36 H 1.08006 * 119.64241 * 179.97438 * 8 7 6 37 37 H 0.96994 * 119.99834 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.46918 * 299.99395 * 13 12 10 39 39 H 1.08995 * 109.47871 * 59.99923 * 13 12 10 40 40 H 1.08992 * 112.85353 * 45.32723 * 14 13 12 41 41 H 1.08999 * 113.61481 * 334.57051 * 15 14 13 42 42 H 1.08999 * 113.61156 * 105.47037 * 15 14 13 43 43 H 1.08994 * 113.74139 * 139.94382 * 16 15 14 44 44 H 0.96997 * 120.00068 * 72.49841 * 17 16 15 45 45 H 0.96999 * 119.99532 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.61183 * 254.52430 * 26 14 13 47 47 H 1.08993 * 113.61921 * 25.42676 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2158 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2321 0.0011 -0.0005 6 6 5.6357 -0.0568 -0.0005 7 6 6.2698 -1.2634 0.0000 8 6 5.5499 -2.4514 0.0001 9 6 4.1628 -2.4395 0.0001 10 6 3.4073 -3.7056 -0.0059 11 8 2.1915 -3.6881 -0.0064 12 7 4.0644 -4.8824 -0.0120 13 6 3.3137 -6.1404 -0.0185 14 6 4.2911 -7.3175 -0.0239 15 6 4.7633 -7.7196 -1.4312 16 6 4.6422 -9.1823 -0.9664 17 7 5.8658 -9.7043 -0.3527 18 6 6.6355 -10.6143 -1.0269 19 1 6.3407 -10.9469 -2.0113 20 6 7.7945 -11.1093 -0.4451 21 7 8.1534 -10.7044 0.7547 22 14 8.8449 -12.3502 -1.3652 23 1 8.2276 -12.6399 -2.6844 24 1 10.2065 -11.7932 -1.5670 25 1 8.9352 -13.6045 -0.5753 26 6 3.6025 -8.6903 0.0543 27 6 3.4787 -1.1973 0.0006 28 7 2.1463 -1.1461 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6324 2.1435 0.0008 33 1 4.0944 2.1673 -0.0001 34 1 6.2130 0.8559 -0.0009 35 1 7.3493 -1.2963 -0.0004 36 1 6.0759 -3.3947 0.0001 37 1 5.0342 -4.8963 -0.0120 38 1 2.6863 -6.1937 0.8712 39 1 2.6863 -6.1846 -0.9087 40 1 5.1045 -7.1956 0.6913 41 1 4.0605 -7.4526 -2.2204 42 1 5.7859 -7.4140 -1.6524 43 1 4.2297 -9.8502 -1.7225 44 1 6.1306 -9.4055 0.5313 45 1 8.9636 -11.0501 1.1610 46 1 3.6894 -9.1673 1.0305 47 1 2.5818 -8.6893 -0.3280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091090585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:48 Heat of formation + Delta-G solvation = 52.951159 kcal Electronic energy + Delta-G solvation = -27802.741816 eV Core-core repulsion = 23951.270179 eV Total energy + Delta-G solvation = -3851.471637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27507 -39.51287 -38.40386 -37.39512 -34.57535 -33.74943 -33.18850 -32.23569 -30.82126 -29.96377 -28.19146 -27.23965 -25.03978 -24.28650 -23.96642 -23.20263 -22.72761 -21.59881 -20.43455 -18.56454 -18.37659 -17.90372 -17.25083 -16.73345 -16.21878 -15.61311 -15.37534 -15.06241 -14.95312 -14.70031 -14.38281 -14.17614 -14.00557 -13.83333 -13.40299 -13.20897 -13.16819 -12.98016 -12.87423 -12.48708 -12.34776 -12.21482 -11.89678 -11.68922 -11.63454 -11.36444 -11.03265 -10.86656 -10.77264 -10.46444 -10.18221 -10.12239 -9.86582 -9.69529 -9.49528 -9.25509 -9.01805 -8.92510 -8.86766 -8.51920 -7.00346 -5.81685 -3.10464 -0.13843 0.49648 1.47478 2.45928 3.16422 3.20120 3.40739 3.46879 3.48906 3.88967 3.90545 4.22256 4.32514 4.45765 4.52488 4.55120 4.67970 4.76616 4.94938 5.00500 5.09857 5.11943 5.20523 5.26212 5.35680 5.37894 5.45392 5.54903 5.59489 5.66361 5.71872 5.74161 5.78381 5.86434 5.89913 5.99184 6.02766 6.14154 6.18334 6.24328 6.39290 6.46718 6.50750 6.62553 6.75890 6.92685 7.05722 7.59998 7.68983 7.81010 8.37055 8.37653 9.48367 10.06227 10.40505 11.40818 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.002035 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.137290 B =13753.395128 C =14877.257024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.157 3.843 3 C -0.173 4.173 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.060 4.060 9 C -0.109 4.109 10 C 0.550 3.450 11 O -0.504 6.504 12 N -0.725 5.725 13 C 0.134 3.866 14 C -0.120 4.120 15 C -0.168 4.168 16 C 0.167 3.833 17 N -0.706 5.706 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.147 4.147 27 C 0.168 3.832 28 N -0.439 5.439 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.398 0.602 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 27.355 -0.775 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.005 3.995 3 C -0.193 4.193 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.090 4.090 7 C -0.145 4.145 8 C -0.080 4.080 9 C -0.113 4.113 10 C 0.335 3.665 11 O -0.379 6.379 12 N -0.378 5.378 13 C 0.011 3.989 14 C -0.138 4.138 15 C -0.209 4.209 16 C 0.055 3.945 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.187 4.187 27 C 0.045 3.955 28 N -0.147 5.147 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.233 0.767 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.615 26.318 -0.888 28.392 hybrid contribution 1.894 0.358 -0.121 1.931 sum -8.721 26.676 -1.009 28.083 Atomic orbital electron populations 1.20787 0.88545 1.03724 1.03364 1.21719 0.97566 0.88066 0.92177 1.21778 0.95069 0.99406 1.03056 1.21446 0.94497 0.97005 0.95231 1.18831 0.94813 0.94009 1.04350 1.21155 0.92543 0.98731 0.96567 1.20867 1.00821 0.91865 1.00913 1.21543 0.92573 0.99408 0.94515 1.19961 0.93155 0.92642 1.05547 1.17917 0.87599 0.83065 0.77879 1.90834 1.12691 1.86949 1.47381 1.46009 1.10435 1.05699 1.75628 1.21449 0.94253 0.81437 1.01752 1.22711 0.98241 0.93145 0.99747 1.23911 1.00791 1.01693 0.94532 1.21098 0.87725 0.91849 0.93846 1.42180 1.22976 1.49823 1.19466 1.19343 1.02333 1.16018 0.99462 0.90937 1.24767 0.98661 1.00736 0.96830 1.69673 1.25953 1.47304 1.15143 0.86098 0.80272 0.80902 0.78807 1.20495 1.21867 1.21850 1.23434 0.98845 0.94991 1.01442 1.18567 0.89363 0.91338 0.96241 1.68166 1.07732 1.27690 1.11128 0.90095 0.89893 0.90656 0.84494 0.84195 0.84866 0.84610 0.84495 0.76687 0.91828 0.91566 0.88951 0.91396 0.91550 0.91968 0.78122 0.93515 0.91328 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.15 36.01 0.37 -0.49 16 2 C 0.16 1.71 6.78 -82.48 -0.56 1.15 16 3 C -0.17 -1.38 9.64 -39.80 -0.38 -1.77 16 4 C -0.06 -0.44 9.89 -39.20 -0.39 -0.82 16 5 C -0.12 -1.20 5.74 -106.82 -0.61 -1.82 16 6 C -0.07 -0.55 9.75 -39.43 -0.38 -0.94 16 7 C -0.13 -1.00 9.93 -40.03 -0.40 -1.40 16 8 C -0.06 -0.59 9.52 -39.16 -0.37 -0.96 16 9 C -0.11 -1.44 5.91 -104.61 -0.62 -2.06 16 10 C 0.55 8.42 7.76 -12.51 -0.10 8.32 16 11 O -0.50 -9.43 15.19 5.28 0.08 -9.35 16 12 N -0.72 -9.71 5.51 -61.38 -0.34 -10.05 16 13 C 0.13 1.90 5.50 -4.04 -0.02 1.88 16 14 C -0.12 -1.82 3.62 -89.80 -0.33 -2.14 16 15 C -0.17 -2.81 7.44 -25.82 -0.19 -3.00 16 16 C 0.17 3.26 4.57 -67.02 -0.31 2.95 16 17 N -0.71 -17.30 5.31 -52.55 -0.28 -17.58 16 18 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 27 C 0.17 2.27 6.61 -84.58 -0.56 1.71 16 28 N -0.44 -6.37 8.33 -7.01 -0.06 -6.43 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.14 1.08 6.37 -52.48 -0.33 0.75 16 37 H 0.40 4.52 6.50 -40.82 -0.27 4.25 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.38 9.96 7.90 -40.82 -0.32 9.64 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -34.88 391.98 -11.05 -45.93 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.78 Total: 10.61 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -5.29 Total: -9.18 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.05 Total: -61.01 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.88 -11.05 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091090585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.884 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds