Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39430 * 119.54504 * 2 1 4 4 C 1.35996 * 121.08433 * 180.02562 * 3 2 1 5 5 C 1.40824 * 119.73619 * 359.97438 * 4 3 2 6 6 N 1.33261 * 120.97882 * 180.24944 * 5 4 3 7 7 C 1.31876 * 121.30149 * 180.25953 * 6 5 4 8 8 C 1.48276 * 119.24767 * 179.75784 * 7 6 5 9 9 O 1.21503 * 120.00320 * 179.73060 * 8 7 6 10 10 N 1.34777 * 119.99730 * 359.45317 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27192 * 10 8 7 12 12 C 1.52997 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.53777 * 113.61799 * 274.14326 * 12 11 10 14 14 C 1.53950 * 87.01756 * 220.04686 * 13 12 11 15 15 N 1.46501 * 113.53488 * 270.80431 * 14 13 12 16 16 C 1.36938 * 120.00379 * 252.49672 * 15 14 13 17 17 H 1.07998 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99826 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00195 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99537 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47330 * 90.00064 * 20 18 16 22 22 H 1.48509 * 109.46886 * 209.99933 * 20 18 16 23 23 H 1.48498 * 109.47077 * 329.99701 * 20 18 16 24 24 C 1.53776 * 113.61488 * 176.52790 * 12 11 10 25 25 C 1.40291 * 121.51327 * 359.48150 * 7 6 5 26 26 C 1.36503 * 119.81501 * 0.26007 * 25 7 6 27 27 C 1.40756 * 118.24974 * 359.97438 * 26 25 7 28 28 C 1.36138 * 119.53911 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46842 * 89.99948 * 1 2 3 30 30 H 1.08995 * 109.47332 * 209.99945 * 1 2 3 31 31 H 1.09000 * 109.46903 * 330.00502 * 1 2 3 32 32 H 1.08007 * 119.45664 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.13026 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99727 * 0.28088 * 10 8 7 35 35 H 1.08998 * 109.47134 * 300.00670 * 11 10 8 36 36 H 1.09002 * 109.46857 * 59.99862 * 11 10 8 37 37 H 1.09003 * 112.84350 * 45.33224 * 12 11 10 38 38 H 1.09002 * 113.61320 * 334.56160 * 13 12 11 39 39 H 1.08998 * 113.61710 * 105.46780 * 13 12 11 40 40 H 1.08999 * 113.74444 * 139.94189 * 14 13 12 41 41 H 0.97000 * 119.99712 * 72.50115 * 15 14 13 42 42 H 0.96997 * 119.99842 * 179.97438 * 19 18 16 43 43 H 1.08998 * 113.61637 * 254.52872 * 24 12 11 44 44 H 1.08995 * 113.61311 * 25.44078 * 24 12 11 45 45 H 1.07997 * 120.08768 * 180.22754 * 25 7 6 46 46 H 1.08004 * 120.87443 * 179.97438 * 26 25 7 47 47 H 1.08003 * 120.17208 * 359.95365 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5540 1.2495 -0.0005 5 6 4.2851 0.0459 -0.0005 6 7 5.6177 0.0528 0.0039 7 6 6.3087 -1.0704 -0.0011 8 6 7.7902 -1.0096 -0.0013 9 8 8.4405 -2.0360 -0.0010 10 7 8.4156 0.1843 -0.0074 11 6 9.8793 0.2445 -0.0136 12 6 10.3297 1.7067 -0.0191 13 6 10.4080 2.3219 -1.4263 14 6 11.6984 3.0209 -0.9614 15 7 11.4657 4.3308 -0.3478 16 6 11.8062 5.4730 -1.0221 17 1 12.2467 5.4082 -2.0060 18 6 11.5861 6.7140 -0.4404 19 7 11.0498 6.7929 0.7589 20 14 12.0500 8.2721 -1.3606 21 1 10.8961 8.7270 -2.1771 22 1 12.4156 9.3319 -0.3866 23 1 13.2072 7.9962 -2.2494 24 6 11.8555 1.8816 0.0595 25 6 5.6743 -2.3217 -0.0006 26 6 4.3110 -2.3914 -0.0001 27 6 3.5823 -1.1871 0.0004 28 6 2.1782 -1.1844 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6383 2.1388 0.0004 33 1 4.0709 2.1979 -0.0009 34 1 7.8965 1.0037 -0.0076 35 1 10.2671 -0.2514 0.8762 36 1 10.2598 -0.2566 -0.9036 37 1 9.7823 2.3208 0.6960 38 1 10.5693 1.5875 -2.2155 39 1 9.5927 3.0106 -1.6478 40 1 12.4835 3.0411 -1.7173 41 1 11.0705 4.3889 0.5361 42 1 10.8964 7.6601 1.1654 43 1 12.2070 2.2155 1.0357 44 1 12.4132 1.0267 -0.3228 45 1 6.2629 -3.2271 -0.0011 46 1 3.8049 -3.3455 -0.0002 47 1 1.6335 -2.1170 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091134151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = 23.192148 kcal Electronic energy + Delta-G solvation = -27472.502622 eV Core-core repulsion = 23619.740538 eV Total energy + Delta-G solvation = -3852.762084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11063 -40.81927 -39.88388 -38.27335 -36.11317 -35.08362 -34.55044 -33.16021 -32.05218 -31.30718 -29.36941 -27.89178 -26.44840 -25.79022 -25.30296 -24.33204 -23.19191 -22.93430 -21.81485 -20.01432 -19.41527 -19.07932 -18.87405 -17.85508 -17.03841 -16.71773 -16.63690 -16.58038 -15.90718 -15.74756 -15.41997 -15.39147 -15.20077 -14.98003 -14.74226 -14.59084 -14.24853 -14.13570 -14.05891 -13.72944 -13.30135 -13.17838 -12.95285 -12.93165 -12.64758 -12.47858 -12.40871 -12.22412 -12.17163 -12.08237 -11.69796 -11.67187 -11.50310 -11.34646 -10.96881 -10.84127 -10.61301 -10.18423 -9.75966 -9.21896 -9.00571 -7.95660 -5.24111 -0.88957 -0.38434 0.86728 1.32750 1.47164 1.48683 1.57185 1.99031 2.14149 2.55371 2.91502 3.02636 3.36662 3.51722 3.61495 3.70980 3.75449 3.77343 3.80074 3.91502 3.99454 4.13090 4.15186 4.31058 4.31322 4.39120 4.40466 4.64543 4.69072 4.71996 4.74911 4.88136 4.89953 4.91934 4.97499 5.00069 5.04538 5.10247 5.20051 5.23322 5.29610 5.33554 5.43301 5.44581 5.52642 5.54208 5.65137 5.83056 6.27861 6.29443 6.63709 7.01540 7.32638 8.09916 8.32227 9.27753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.002241 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.694276 B =12491.214290 C =14665.328620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.106 4.106 5 C 0.093 3.907 6 N -0.462 5.462 7 C 0.092 3.908 8 C 0.565 3.435 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.137 3.863 12 C -0.105 4.105 13 C -0.155 4.155 14 C 0.144 3.856 15 N -0.720 5.720 16 C -0.242 4.242 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.269 1.269 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.049 4.049 27 C -0.093 4.093 28 C -0.106 4.106 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.156 0.844 46 H 0.186 0.814 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.786 -20.873 -1.663 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.124 4.124 5 C -0.031 4.031 6 N -0.174 5.174 7 C -0.061 4.061 8 C 0.350 3.650 9 O -0.442 6.442 10 N -0.350 5.350 11 C 0.014 3.986 12 C -0.123 4.123 13 C -0.195 4.195 14 C 0.034 3.966 15 N -0.358 5.358 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.194 1.194 24 C -0.170 4.170 25 C -0.158 4.158 26 C -0.074 4.074 27 C -0.095 4.095 28 C -0.124 4.124 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.174 0.826 46 H 0.203 0.797 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.804 -20.587 -1.792 30.041 hybrid contribution -0.186 1.015 0.113 1.038 sum -21.989 -19.572 -1.679 29.486 Atomic orbital electron populations 1.20941 0.88242 1.04390 1.03678 1.20192 0.98319 0.92445 0.96406 1.21209 0.93204 0.99575 0.97426 1.21052 0.94711 0.96587 1.00066 1.19205 0.88542 0.94600 1.00758 1.67725 1.08740 1.30262 1.10648 1.21274 0.93482 0.90764 1.00536 1.18198 0.86568 0.83728 0.76507 1.90737 1.66775 1.34645 1.52037 1.45958 1.08351 1.08597 1.72100 1.21462 0.78388 0.96291 1.02457 1.22494 0.97444 0.94005 0.98393 1.23753 1.00171 0.99538 0.96055 1.21425 0.95551 0.84441 0.95142 1.42316 1.73787 1.00564 1.19128 1.19685 1.32500 0.85636 0.99563 0.90491 1.25576 1.02713 1.00775 0.97843 1.69817 1.51420 1.24017 1.16789 0.85135 0.77969 0.79334 0.77304 1.21497 1.22244 1.19353 1.23331 0.94544 0.99124 0.99980 1.21849 0.96207 0.98024 0.99767 1.21870 0.92791 0.99080 0.93701 1.19247 0.96157 0.93585 1.00553 1.21202 0.91023 0.99991 1.00176 0.89706 0.89829 0.90300 0.82769 0.84715 0.75014 0.91103 0.90583 0.90513 0.88938 0.93765 0.91890 0.79432 0.94030 0.92228 0.87229 0.82599 0.79667 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.98 71.24 0.71 0.14 16 2 C -0.07 -0.83 5.85 -20.06 -0.12 -0.95 16 3 C -0.09 -1.33 9.58 22.04 0.21 -1.11 16 4 C -0.11 -2.13 9.99 22.38 0.22 -1.90 16 5 C 0.09 2.19 6.61 40.47 0.27 2.45 16 6 N -0.46 -12.63 9.47 -177.76 -1.68 -14.31 16 7 C 0.09 2.47 6.75 42.31 0.29 2.76 16 8 C 0.56 16.92 7.81 86.91 0.68 17.60 16 9 O -0.56 -19.00 16.28 -3.73 -0.06 -19.06 16 10 N -0.70 -20.03 5.54 -465.56 -2.58 -22.61 16 11 C 0.14 3.77 5.50 86.38 0.47 4.24 16 12 C -0.10 -3.22 3.62 -10.27 -0.04 -3.26 16 13 C -0.15 -5.23 7.44 31.18 0.23 -5.00 16 14 C 0.14 5.66 4.57 45.58 0.21 5.87 16 15 N -0.72 -36.47 5.31 -320.17 -1.70 -38.16 16 16 C -0.24 -13.53 9.97 84.03 0.84 -12.69 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 20 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.13 -4.10 7.39 31.12 0.23 -3.87 16 25 C -0.14 -2.87 9.54 22.36 0.21 -2.66 16 26 C -0.05 -0.75 9.88 22.48 0.22 -0.52 16 27 C -0.09 -1.68 5.75 -21.22 -0.12 -1.80 16 28 C -0.11 -1.26 9.37 22.31 0.21 -1.05 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.22 8.07 -2.39 -0.02 0.20 16 31 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.41 11.84 7.78 -92.71 -0.72 11.12 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.03 7.88 -2.39 -0.02 2.01 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.09 2.69 7.92 -2.39 -0.02 2.67 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 41 H 0.37 20.32 7.90 -92.71 -0.73 19.59 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.11 2.78 8.10 -2.39 -0.02 2.76 16 45 H 0.16 2.95 7.60 -2.91 -0.02 2.92 16 46 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -72.77 396.13 1.03 -71.74 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.45 Total: 39.16 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.20 Total: -5.74 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -5.68 Total: -134.56 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.06 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.77 1.03 -71.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091134151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.931 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds