Wall clock time and date at job start Tue Mar 31 2020 22:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36354 * 119.95595 * 2 1 4 4 C 1.38864 * 121.05427 * 179.97438 * 3 2 1 5 5 C 1.38741 * 120.73183 * 359.97438 * 4 3 2 6 6 C 1.47439 * 120.33776 * 180.02562 * 5 4 3 7 7 O 1.21598 * 120.00256 * 179.97438 * 6 5 4 8 8 N 1.34777 * 119.99826 * 359.97438 * 6 5 4 9 9 C 1.46497 * 120.00124 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47025 * 180.02562 * 9 8 6 11 11 C 1.53789 * 113.61030 * 274.13167 * 10 9 8 12 12 C 1.53954 * 87.01670 * 220.05122 * 11 10 9 13 13 N 1.46500 * 113.53765 * 270.80986 * 12 11 10 14 14 C 1.36935 * 120.00094 * 252.49776 * 13 12 11 15 15 H 1.07997 * 120.00162 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99895 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00216 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46900 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46942 * 120.00493 * 18 16 14 21 21 H 1.48502 * 109.47409 * 240.00763 * 18 16 14 22 22 C 1.53779 * 87.11495 * 25.36454 * 12 11 10 23 23 C 1.41785 * 119.33427 * 359.97438 * 5 4 3 24 24 N 1.33346 * 121.05366 * 179.72844 * 23 5 4 25 25 C 1.31229 * 121.34867 * 179.72140 * 24 23 5 26 26 C 1.39233 * 121.69957 * 0.57068 * 25 24 23 27 27 C 1.36635 * 119.90497 * 359.71564 * 26 25 24 28 28 C 1.40434 * 119.95949 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.46845 * 89.99896 * 1 2 3 30 30 H 1.09002 * 109.46992 * 210.00186 * 1 2 3 31 31 H 1.09003 * 109.46972 * 330.00067 * 1 2 3 32 32 H 1.07999 * 119.47370 * 359.97050 * 3 2 1 33 33 H 1.08001 * 119.63662 * 179.97438 * 4 3 2 34 34 H 0.97006 * 119.99882 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.46744 * 299.99845 * 9 8 6 36 36 H 1.08994 * 109.46992 * 59.99566 * 9 8 6 37 37 H 1.08999 * 112.85374 * 45.33081 * 10 9 8 38 38 H 1.08996 * 113.61431 * 334.57135 * 11 10 9 39 39 H 1.08999 * 113.61071 * 105.46948 * 11 10 9 40 40 H 1.08998 * 113.73983 * 139.94664 * 12 11 10 41 41 H 0.97004 * 119.99634 * 72.49610 * 13 12 11 42 42 H 0.96999 * 120.00092 * 179.97438 * 17 16 14 43 43 H 1.08993 * 113.61572 * 220.09027 * 22 12 11 44 44 H 1.08998 * 113.61639 * 89.18269 * 22 12 11 45 45 H 1.08001 * 119.14957 * 180.28748 * 25 24 23 46 46 H 1.07994 * 120.04806 * 179.73506 * 26 25 24 47 47 H 1.07996 * 120.92084 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2080 0.0005 5 6 4.3080 0.0292 0.0016 6 6 5.7819 0.0676 0.0027 7 8 6.4171 -0.9692 0.0042 8 7 6.4251 1.2520 0.0022 9 6 7.8896 1.2902 0.0028 10 6 8.3617 2.7456 0.0026 11 6 8.4558 3.3625 -1.4030 12 6 9.7544 4.0412 -0.9306 13 7 9.5385 5.3530 -0.3152 14 6 9.8992 6.4914 -0.9854 15 1 10.3424 6.4222 -1.9678 16 6 9.6941 7.7344 -0.4025 17 7 9.1535 7.8188 0.7946 18 14 10.1868 9.2873 -1.3164 19 1 10.7688 8.9231 -2.6331 20 1 8.9892 10.1405 -1.5239 21 1 11.1936 10.0327 -0.5189 22 6 9.8897 2.8974 0.0885 23 6 3.6242 -1.2128 0.0027 24 7 4.2931 -2.3663 -0.0016 25 6 3.6662 -3.5192 0.0048 26 6 2.2760 -3.5959 0.0047 27 6 1.5305 -2.4509 0.0036 28 6 2.2083 -1.2167 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6386 2.1113 -0.0005 33 1 4.0923 2.1568 0.0001 34 1 5.9183 2.0792 0.0014 35 1 8.2658 0.7867 0.8933 36 1 8.2665 0.7854 -0.8867 37 1 7.8205 3.3663 0.7166 38 1 8.6097 2.6275 -2.1930 39 1 7.6519 4.0637 -1.6267 40 1 10.5431 4.0512 -1.6829 41 1 9.1401 5.4152 0.5671 42 1 9.0106 8.6874 1.2021 43 1 10.2416 3.2239 1.0670 44 1 10.4363 2.0350 -0.2931 45 1 4.2435 -4.4319 0.0057 46 1 1.7876 -4.5591 0.0058 47 1 0.4513 -2.4913 0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091150998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:59 Heat of formation + Delta-G solvation = 53.798226 kcal Electronic energy + Delta-G solvation = -27833.587051 eV Core-core repulsion = 23982.152145 eV Total energy + Delta-G solvation = -3851.434905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33280 -39.48816 -38.37076 -37.50490 -34.55427 -34.37898 -33.17705 -31.52801 -30.88778 -30.15368 -28.36542 -26.71534 -25.03456 -24.61937 -23.95785 -23.64790 -22.45365 -21.54680 -20.16336 -18.62549 -18.36932 -17.85858 -17.39459 -17.17753 -15.92961 -15.75619 -15.37316 -14.98992 -14.80062 -14.64823 -14.38599 -14.22330 -14.04129 -13.84989 -13.65498 -13.53680 -13.17457 -13.10156 -12.87339 -12.60448 -12.24542 -12.22471 -11.89687 -11.69406 -11.60664 -11.34688 -11.03088 -10.86278 -10.68815 -10.46178 -10.17969 -10.12091 -9.86412 -9.69349 -9.49435 -9.26067 -9.13460 -8.92235 -8.86271 -8.43959 -7.00173 -5.81539 -3.10334 -0.15959 0.50403 1.45993 2.43783 3.18555 3.20827 3.40797 3.46946 3.48964 3.91066 3.99531 4.16054 4.31524 4.43276 4.46719 4.55238 4.64953 4.69552 4.89784 4.98434 5.05932 5.10495 5.11239 5.17650 5.25944 5.31331 5.45219 5.45628 5.58148 5.62707 5.66828 5.70108 5.75748 5.84123 5.90192 5.99836 6.04599 6.14508 6.16271 6.24677 6.39616 6.46226 6.51204 6.62919 6.76175 6.93026 7.05990 7.60120 7.69134 7.77926 8.37689 8.37828 9.48489 10.06379 10.40656 11.40966 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017810 B = 0.002080 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.779746 B =13460.693772 C =14742.176588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.040 4.040 3 C -0.128 4.128 4 C -0.056 4.056 5 C -0.113 4.113 6 C 0.550 3.450 7 O -0.505 6.505 8 N -0.725 5.725 9 C 0.134 3.866 10 C -0.120 4.120 11 C -0.168 4.168 12 C 0.167 3.833 13 N -0.706 5.706 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.147 4.147 23 C 0.166 3.834 24 N -0.437 5.437 25 C 0.130 3.870 26 C -0.177 4.177 27 C -0.060 4.060 28 C -0.109 4.109 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.160 0.840 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.751 -21.125 -0.877 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.117 4.117 6 C 0.336 3.664 7 O -0.380 6.380 8 N -0.378 5.378 9 C 0.011 3.989 10 C -0.138 4.138 11 C -0.209 4.209 12 C 0.055 3.945 13 N -0.344 5.344 14 C -0.371 4.371 15 H 0.091 0.909 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.187 4.187 23 C 0.042 3.958 24 N -0.144 5.144 25 C -0.042 4.042 26 C -0.197 4.197 27 C -0.086 4.086 28 C -0.112 4.112 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.177 0.823 46 H 0.155 0.845 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.228 -21.576 -0.995 28.263 hybrid contribution -1.191 1.290 -0.110 1.759 sum -19.418 -20.286 -1.105 28.104 Atomic orbital electron populations 1.20930 0.90356 1.03524 1.03042 1.19895 0.96330 0.91951 0.95983 1.20745 0.93847 0.98158 1.01839 1.21504 0.94327 0.97515 0.94288 1.19939 0.93820 0.91960 1.06016 1.17912 0.86597 0.84051 0.77842 1.90836 1.67404 1.32263 1.47462 1.46010 1.08147 1.07981 1.75641 1.21449 0.78379 0.97312 1.01763 1.22713 0.97749 0.93629 0.99753 1.23911 1.02686 0.99781 0.94550 1.21097 0.94275 0.85327 0.93820 1.42182 1.73206 0.99320 1.19739 1.19342 1.33528 0.84597 0.99675 0.90937 1.24766 1.01691 0.97673 0.96863 1.69673 1.49536 1.23597 1.15279 0.86099 0.77670 0.83534 0.78785 1.20496 1.21871 1.21845 1.23433 0.93983 0.99855 1.01441 1.18596 0.88836 0.91979 0.96355 1.68346 1.38794 0.97222 1.09988 1.23199 0.91897 0.96445 0.92676 1.21965 0.95692 0.99572 1.02451 1.21491 1.00452 0.91255 0.95432 1.18673 0.93756 0.94369 1.04361 0.90293 0.91019 0.90574 0.84629 0.84450 0.76696 0.91823 0.91561 0.88952 0.91392 0.91552 0.91969 0.78122 0.93516 0.91328 0.90433 0.82311 0.84468 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.53 36.01 0.34 -0.24 16 2 C -0.04 -0.33 5.89 -104.47 -0.62 -0.95 16 3 C -0.13 -1.06 9.57 -40.03 -0.38 -1.44 16 4 C -0.06 -0.56 9.52 -39.16 -0.37 -0.93 16 5 C -0.11 -1.50 5.91 -104.61 -0.62 -2.12 16 6 C 0.55 8.46 7.76 -12.51 -0.10 8.37 16 7 O -0.50 -9.51 15.19 5.28 0.08 -9.43 16 8 N -0.72 -9.75 5.51 -61.38 -0.34 -10.09 16 9 C 0.13 1.91 5.50 -4.04 -0.02 1.89 16 10 C -0.12 -1.82 3.62 -89.80 -0.33 -2.15 16 11 C -0.17 -2.82 7.44 -25.82 -0.19 -3.01 16 12 C 0.17 3.26 4.57 -67.03 -0.31 2.96 16 13 N -0.71 -17.32 5.31 -52.55 -0.28 -17.60 16 14 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 23 C 0.17 2.22 6.61 -84.58 -0.56 1.66 16 24 N -0.44 -6.24 8.44 -10.76 -0.09 -6.33 16 25 C 0.13 1.31 11.15 -17.44 -0.19 1.12 16 26 C -0.18 -1.30 10.03 -39.79 -0.40 -1.70 16 27 C -0.06 -0.46 9.36 -39.19 -0.37 -0.83 16 28 C -0.11 -1.12 5.74 -106.82 -0.61 -1.73 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 6.41 -51.93 -0.33 -0.06 16 31 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.10 6.37 -52.49 -0.33 0.77 16 34 H 0.40 4.54 6.50 -40.82 -0.27 4.27 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.38 9.97 7.90 -40.82 -0.32 9.65 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 45 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.14 0.62 6.42 -52.49 -0.34 0.28 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -35.02 388.10 -10.84 -45.85 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.60 Total: 10.52 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -5.16 Total: -8.91 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.02 Total: -60.98 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.02 -10.84 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091150998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.653 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds