Wall clock time and date at job start Tue Mar 31 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36540 * 120.08971 * 2 1 4 4 C 1.40720 * 118.23904 * 180.24201 * 3 2 1 5 5 C 1.40435 * 121.27503 * 179.80175 * 4 3 2 6 6 C 1.36126 * 119.64564 * 179.78636 * 5 4 3 7 7 C 1.39434 * 120.92066 * 359.91107 * 6 5 4 8 8 C 1.35998 * 121.09124 * 0.07348 * 7 6 5 9 9 C 1.40832 * 119.73393 * 359.96978 * 8 7 6 10 10 N 1.33245 * 120.99514 * 180.02562 * 9 8 7 11 11 C 1.31900 * 121.29835 * 179.97438 * 10 9 8 12 12 C 1.48275 * 119.24021 * 180.02562 * 11 10 9 13 13 O 1.21499 * 120.00326 * 174.18445 * 12 11 10 14 14 N 1.34783 * 119.99803 * 354.18283 * 12 11 10 15 15 C 1.46493 * 119.99975 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47225 * 179.97438 * 15 14 12 17 17 C 1.53787 * 113.61498 * 274.13984 * 16 15 14 18 18 C 1.53951 * 87.01858 * 220.04597 * 17 16 15 19 19 N 1.46502 * 113.53864 * 270.81277 * 18 17 16 20 20 C 1.36932 * 119.99902 * 252.49865 * 19 18 17 21 21 H 1.08005 * 120.00359 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00180 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99994 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00346 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47035 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47111 * 120.00064 * 24 22 20 27 27 H 1.48505 * 109.47246 * 240.00095 * 24 22 20 28 28 C 1.53773 * 113.61536 * 176.52933 * 16 15 14 29 29 H 1.08999 * 109.46765 * 263.38770 * 1 2 3 30 30 H 1.09002 * 109.46878 * 23.38721 * 1 2 3 31 31 H 1.08997 * 109.47344 * 143.38955 * 1 2 3 32 32 H 1.08002 * 120.88018 * 359.76620 * 3 2 1 33 33 H 1.08002 * 120.17407 * 359.71201 * 5 4 3 34 34 H 1.07998 * 119.53879 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.45647 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.13237 * 179.97438 * 8 7 6 37 37 H 0.97005 * 119.99493 * 0.02562 * 14 12 11 38 38 H 1.08997 * 109.47461 * 299.99867 * 15 14 12 39 39 H 1.09006 * 109.47052 * 60.00207 * 15 14 12 40 40 H 1.09004 * 112.84617 * 45.33044 * 16 15 14 41 41 H 1.09000 * 113.61403 * 334.56507 * 17 16 15 42 42 H 1.09003 * 113.61115 * 105.46650 * 17 16 15 43 43 H 1.08996 * 113.74477 * 139.94376 * 18 17 16 44 44 H 0.96996 * 120.00258 * 72.49141 * 19 18 17 45 45 H 0.97001 * 120.00289 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61892 * 254.53316 * 28 16 15 47 47 H 1.08995 * 113.61783 * 25.43765 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0052 5 6 4.3655 2.3121 -0.0097 6 6 5.7242 2.2295 -0.0103 7 6 6.3668 0.9920 -0.0047 8 6 5.6569 -0.1679 0.0001 9 6 4.2492 -0.1253 0.0000 10 7 3.5288 -1.2462 0.0051 11 6 2.2102 -1.2133 0.0055 12 6 1.4539 -2.4886 0.0119 13 8 0.2437 -2.4767 0.1190 14 7 2.1089 -3.6612 -0.1012 15 6 1.3617 -4.9212 -0.0944 16 6 2.3358 -6.0925 -0.2363 17 6 2.6817 -6.4328 -1.6956 18 6 2.6036 -7.9143 -1.2843 19 7 3.8772 -8.4561 -0.8040 20 6 4.5849 -9.3332 -1.5817 21 1 4.2040 -9.6260 -2.5490 22 6 5.7919 -9.8462 -1.1268 23 7 6.2564 -9.4891 0.0518 24 14 6.7571 -11.0433 -2.1874 25 1 6.0250 -11.2806 -3.4574 26 1 8.0946 -10.4719 -2.4869 27 1 6.9191 -12.3285 -1.4612 28 6 1.6581 -7.4705 -0.1555 29 1 -0.3633 -0.1183 1.0208 30 1 -0.3633 0.9433 -0.4079 31 1 -0.3634 -0.8249 -0.6128 32 1 1.6675 2.1257 -0.0038 33 1 3.8802 3.2769 -0.0139 34 1 6.3127 3.1350 -0.0142 35 1 7.4462 0.9540 -0.0049 36 1 6.1705 -1.1179 0.0040 37 1 3.0751 -3.6706 -0.1864 38 1 0.8151 -5.0144 0.8440 39 1 0.6584 -4.9311 -0.9272 40 1 3.2094 -5.9970 0.4086 41 1 1.9114 -6.1361 -2.4075 42 1 3.6804 -6.1134 -1.9934 43 1 2.1262 -8.5518 -2.0284 44 1 4.2192 -8.1934 0.0649 45 1 7.0997 -9.8478 0.3698 46 1 1.8316 -7.9878 0.7881 47 1 0.6075 -7.4582 -0.4455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091151215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:06 Heat of formation + Delta-G solvation = 49.785823 kcal Electronic energy + Delta-G solvation = -27874.092147 eV Core-core repulsion = 24022.483251 eV Total energy + Delta-G solvation = -3851.608896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40355 -39.72115 -38.55158 -37.22224 -35.06689 -34.15879 -33.15650 -31.94212 -30.84337 -30.05144 -27.76159 -27.11421 -25.29166 -25.02270 -23.65402 -22.87102 -22.39567 -21.75746 -20.94619 -18.80931 -18.27375 -18.01408 -17.27445 -16.97996 -15.92044 -15.70304 -15.65257 -15.00992 -14.81128 -14.70581 -14.58795 -14.16626 -14.05398 -13.71880 -13.42787 -13.38678 -13.32131 -13.05060 -12.88416 -12.48873 -12.18910 -11.99456 -11.93164 -11.90776 -11.84390 -11.37936 -11.03299 -10.85448 -10.69905 -10.46987 -10.27498 -10.13050 -9.96497 -9.68452 -9.61443 -9.42986 -9.14327 -8.89915 -8.83893 -8.57288 -6.98952 -5.80002 -3.08908 -0.12749 0.34875 1.59920 2.17045 3.02373 3.03570 3.41938 3.47864 3.49999 3.77232 3.81708 4.18385 4.36296 4.39645 4.55071 4.56408 4.72910 4.76791 4.94260 5.00780 5.08163 5.09268 5.24935 5.30220 5.41004 5.46355 5.57664 5.59052 5.64543 5.64975 5.71247 5.76630 5.87317 5.95992 5.97637 6.01979 6.07154 6.11959 6.21831 6.23444 6.39143 6.44814 6.48622 6.60916 6.77489 6.91472 7.06589 7.28864 7.59364 7.70193 8.12628 8.39153 9.49874 10.07731 10.41901 11.42497 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002372 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.822206 B =11799.564094 C =13845.778436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.073 4.073 4 C -0.081 4.081 5 C -0.106 4.106 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.080 4.080 9 C 0.117 3.883 10 N -0.436 5.436 11 C 0.116 3.884 12 C 0.565 3.435 13 O -0.531 6.531 14 N -0.700 5.700 15 C 0.129 3.871 16 C -0.120 4.120 17 C -0.169 4.169 18 C 0.168 3.832 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.413 0.587 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 26.480 0.837 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.099 4.099 4 C -0.083 4.083 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.098 4.098 9 C -0.006 4.006 10 N -0.147 5.147 11 C -0.038 4.038 12 C 0.349 3.651 13 O -0.408 6.408 14 N -0.350 5.350 15 C 0.006 3.994 16 C -0.139 4.139 17 C -0.210 4.210 18 C 0.055 3.945 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.187 4.187 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.249 0.751 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.262 25.494 0.786 26.519 hybrid contribution 0.958 0.401 -0.210 1.059 sum -6.304 25.894 0.576 26.657 Atomic orbital electron populations 1.21076 0.88742 1.03338 1.04076 1.20552 0.98599 0.92045 0.97647 1.21351 0.92400 0.98453 0.97659 1.18972 0.94222 0.94563 1.00560 1.20981 0.94112 0.97036 1.00339 1.21016 0.94653 0.98154 0.98479 1.20955 1.00694 0.91954 0.99245 1.20965 0.91037 0.99779 0.98054 1.18843 0.94221 0.87619 0.99945 1.67833 1.06472 1.30784 1.09608 1.21262 0.89583 0.93944 0.99039 1.17890 0.86652 0.83076 0.77471 1.90722 1.13041 1.86670 1.50388 1.45978 1.12081 1.05372 1.71617 1.21571 0.94488 0.81442 1.01877 1.22716 0.98476 0.93102 0.99572 1.23918 1.01085 1.01829 0.94134 1.21090 0.87671 0.91637 0.94077 1.42181 1.19485 1.52049 1.20718 1.19335 1.00841 1.17736 0.99273 0.90949 1.24766 0.98199 1.00877 0.97112 1.69673 1.21700 1.47844 1.18811 0.86103 0.79918 0.80664 0.79427 1.20503 1.21861 1.21840 1.23437 0.98984 0.94946 1.01306 0.90409 0.92299 0.88112 0.83789 0.85091 0.85346 0.84961 0.84112 0.75091 0.91508 0.91271 0.88801 0.91428 0.91464 0.91950 0.78098 0.93504 0.91291 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.68 36.01 0.31 -0.82 16 2 C -0.09 -0.95 5.89 -104.48 -0.62 -1.56 16 3 C -0.07 -0.66 9.50 -39.26 -0.37 -1.04 16 4 C -0.08 -0.81 5.75 -106.71 -0.61 -1.42 16 5 C -0.11 -0.78 9.77 -39.51 -0.39 -1.17 16 6 C -0.10 -0.70 9.95 -39.90 -0.40 -1.10 16 7 C -0.11 -0.82 9.94 -39.94 -0.40 -1.22 16 8 C -0.08 -0.79 9.99 -39.41 -0.39 -1.19 16 9 C 0.12 1.39 6.61 -84.85 -0.56 0.82 16 10 N -0.44 -5.77 9.48 -7.54 -0.07 -5.85 16 11 C 0.12 1.52 6.75 -82.96 -0.56 0.96 16 12 C 0.56 8.03 7.75 -12.13 -0.09 7.94 16 13 O -0.53 -8.24 13.22 5.37 0.07 -8.16 16 14 N -0.70 -9.62 5.54 -61.11 -0.34 -9.96 16 15 C 0.13 1.77 5.50 -4.04 -0.02 1.75 16 16 C -0.12 -1.83 3.62 -89.81 -0.33 -2.16 16 17 C -0.17 -2.86 7.44 -25.83 -0.19 -3.05 16 18 C 0.17 3.28 4.57 -67.02 -0.31 2.97 16 19 N -0.71 -17.46 5.31 -52.55 -0.28 -17.73 16 20 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 31 H 0.10 1.18 5.81 -51.93 -0.30 0.88 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.41 5.60 7.79 -40.82 -0.32 5.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.39 10.08 7.90 -40.82 -0.32 9.76 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -31.94 390.70 -11.18 -43.12 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.79 Total: 12.74 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -5.36 Total: -10.09 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.04 Total: -60.74 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.16 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.94 -11.18 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091151215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.909 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds