Wall clock time and date at job start Tue Mar 31 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36540 * 120.08971 * 2 1 4 4 C 1.40720 * 118.23904 * 180.24201 * 3 2 1 5 5 C 1.40435 * 121.27503 * 179.80175 * 4 3 2 6 6 C 1.36126 * 119.64564 * 179.78636 * 5 4 3 7 7 C 1.39434 * 120.92066 * 359.91107 * 6 5 4 8 8 C 1.35998 * 121.09124 * 0.07348 * 7 6 5 9 9 C 1.40832 * 119.73393 * 359.96978 * 8 7 6 10 10 N 1.33245 * 120.99514 * 180.02562 * 9 8 7 11 11 C 1.31900 * 121.29835 * 179.97438 * 10 9 8 12 12 C 1.48275 * 119.24021 * 180.02562 * 11 10 9 13 13 O 1.21499 * 120.00326 * 174.18445 * 12 11 10 14 14 N 1.34783 * 119.99803 * 354.18283 * 12 11 10 15 15 C 1.46493 * 119.99975 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47225 * 179.97438 * 15 14 12 17 17 C 1.53787 * 113.61498 * 274.13984 * 16 15 14 18 18 C 1.53951 * 87.01858 * 220.04597 * 17 16 15 19 19 N 1.46502 * 113.53864 * 270.81277 * 18 17 16 20 20 C 1.36932 * 119.99902 * 252.49865 * 19 18 17 21 21 H 1.08005 * 120.00359 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00180 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99994 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00346 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47035 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47111 * 120.00064 * 24 22 20 27 27 H 1.48505 * 109.47246 * 240.00095 * 24 22 20 28 28 C 1.53773 * 113.61536 * 176.52933 * 16 15 14 29 29 H 1.08999 * 109.46765 * 263.38770 * 1 2 3 30 30 H 1.09002 * 109.46878 * 23.38721 * 1 2 3 31 31 H 1.08997 * 109.47344 * 143.38955 * 1 2 3 32 32 H 1.08002 * 120.88018 * 359.76620 * 3 2 1 33 33 H 1.08002 * 120.17407 * 359.71201 * 5 4 3 34 34 H 1.07998 * 119.53879 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.45647 * 180.02562 * 7 6 5 36 36 H 1.07997 * 120.13237 * 179.97438 * 8 7 6 37 37 H 0.97005 * 119.99493 * 0.02562 * 14 12 11 38 38 H 1.08997 * 109.47461 * 299.99867 * 15 14 12 39 39 H 1.09006 * 109.47052 * 60.00207 * 15 14 12 40 40 H 1.09004 * 112.84617 * 45.33044 * 16 15 14 41 41 H 1.09000 * 113.61403 * 334.56507 * 17 16 15 42 42 H 1.09003 * 113.61115 * 105.46650 * 17 16 15 43 43 H 1.08996 * 113.74477 * 139.94376 * 18 17 16 44 44 H 0.96996 * 120.00258 * 72.49141 * 19 18 17 45 45 H 0.97001 * 120.00289 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.61892 * 254.53316 * 28 16 15 47 47 H 1.08995 * 113.61783 * 25.43765 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5981 1.1360 -0.0052 5 6 4.3655 2.3121 -0.0097 6 6 5.7242 2.2295 -0.0103 7 6 6.3668 0.9920 -0.0047 8 6 5.6569 -0.1679 0.0001 9 6 4.2492 -0.1253 0.0000 10 7 3.5288 -1.2462 0.0051 11 6 2.2102 -1.2133 0.0055 12 6 1.4539 -2.4886 0.0119 13 8 0.2437 -2.4767 0.1190 14 7 2.1089 -3.6612 -0.1012 15 6 1.3617 -4.9212 -0.0944 16 6 2.3358 -6.0925 -0.2363 17 6 2.6817 -6.4328 -1.6956 18 6 2.6036 -7.9143 -1.2843 19 7 3.8772 -8.4561 -0.8040 20 6 4.5849 -9.3332 -1.5817 21 1 4.2040 -9.6260 -2.5490 22 6 5.7919 -9.8462 -1.1268 23 7 6.2564 -9.4891 0.0518 24 14 6.7571 -11.0433 -2.1874 25 1 6.0250 -11.2806 -3.4574 26 1 8.0946 -10.4719 -2.4869 27 1 6.9191 -12.3285 -1.4612 28 6 1.6581 -7.4705 -0.1555 29 1 -0.3633 -0.1183 1.0208 30 1 -0.3633 0.9433 -0.4079 31 1 -0.3634 -0.8249 -0.6128 32 1 1.6675 2.1257 -0.0038 33 1 3.8802 3.2769 -0.0139 34 1 6.3127 3.1350 -0.0142 35 1 7.4462 0.9540 -0.0049 36 1 6.1705 -1.1179 0.0040 37 1 3.0751 -3.6706 -0.1864 38 1 0.8151 -5.0144 0.8440 39 1 0.6584 -4.9311 -0.9272 40 1 3.2094 -5.9970 0.4086 41 1 1.9114 -6.1361 -2.4075 42 1 3.6804 -6.1134 -1.9934 43 1 2.1262 -8.5518 -2.0284 44 1 4.2192 -8.1934 0.0649 45 1 7.0997 -9.8478 0.3698 46 1 1.8316 -7.9878 0.7881 47 1 0.6075 -7.4582 -0.4455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091151215.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:06 Heat of formation + Delta-G solvation = 30.325645 kcal Electronic energy + Delta-G solvation = -27874.936004 eV Core-core repulsion = 24022.483251 eV Total energy + Delta-G solvation = -3852.452753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19780 -40.78557 -39.89488 -37.98482 -36.23561 -35.33496 -34.72244 -32.65550 -32.16949 -31.36176 -28.94783 -27.92727 -26.45333 -26.31767 -25.49438 -23.64643 -23.10605 -23.04356 -21.97634 -20.06549 -19.44493 -19.10657 -18.93016 -17.71531 -17.07137 -16.71567 -16.69273 -16.49759 -15.95058 -15.69273 -15.47240 -15.39823 -15.30415 -14.82691 -14.69825 -14.52513 -14.23414 -13.98786 -13.97347 -13.72531 -13.33164 -13.14669 -12.96467 -12.92917 -12.70199 -12.62506 -12.59679 -12.49832 -12.14112 -12.05695 -11.54720 -11.49975 -11.40540 -11.12632 -10.96543 -10.84788 -10.49014 -10.16353 -9.71307 -9.23602 -9.00926 -7.96082 -5.24574 -0.87564 -0.37414 0.89066 1.35441 1.47052 1.47478 1.57748 2.00822 2.16568 2.54979 2.93763 3.04224 3.36413 3.50978 3.62153 3.70150 3.71209 3.77402 3.80254 3.92066 4.08863 4.12970 4.20033 4.31114 4.34551 4.38699 4.39308 4.60725 4.69685 4.72831 4.75938 4.84028 4.91602 4.92459 4.97321 5.04127 5.08724 5.10039 5.20590 5.31503 5.34557 5.36530 5.44432 5.46579 5.52076 5.58682 5.65137 5.84665 6.27573 6.31201 6.64336 7.04437 7.32265 8.09484 8.31686 9.27517 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002372 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.822206 B =11799.564094 C =13845.778436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.058 4.058 4 C -0.095 4.095 5 C -0.102 4.102 6 C -0.102 4.102 7 C -0.096 4.096 8 C -0.112 4.112 9 C 0.091 3.909 10 N -0.462 5.462 11 C 0.090 3.910 12 C 0.562 3.438 13 O -0.548 6.548 14 N -0.702 5.702 15 C 0.139 3.861 16 C -0.105 4.105 17 C -0.155 4.155 18 C 0.145 3.855 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.266 1.266 26 H -0.294 1.294 27 H -0.293 1.293 28 C -0.130 4.130 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.132 0.868 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.058 0.942 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 29.472 0.009 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.083 4.083 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.131 4.131 9 C -0.033 4.033 10 N -0.173 5.173 11 C -0.062 4.062 12 C 0.348 3.652 13 O -0.427 6.427 14 N -0.352 5.352 15 C 0.016 3.984 16 C -0.124 4.124 17 C -0.195 4.195 18 C 0.035 3.965 19 N -0.358 5.358 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.220 1.220 28 C -0.170 4.170 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.150 0.850 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.837 28.495 -0.073 29.553 hybrid contribution 1.168 -0.387 0.025 1.230 sum -6.669 28.108 -0.048 28.888 Atomic orbital electron populations 1.20978 0.88036 1.03940 1.03475 1.20717 0.99177 0.92045 0.98826 1.21768 0.92169 0.99171 0.95223 1.19290 0.94997 0.94775 1.00605 1.21400 0.94422 0.97361 0.98858 1.21468 0.94878 0.98877 0.96760 1.21335 1.01928 0.91608 0.96732 1.21069 0.90762 1.00664 1.00581 1.19241 0.94974 0.88263 1.00851 1.67740 1.06766 1.32202 1.10634 1.21214 0.89859 0.94105 1.01050 1.18160 0.86596 0.83572 0.76881 1.90704 1.13653 1.87062 1.51246 1.45990 1.12016 1.05490 1.71753 1.21440 0.93858 0.80748 1.02365 1.22497 0.98123 0.93780 0.97997 1.23757 1.00645 0.99448 0.95677 1.21421 0.86538 0.92729 0.95816 1.42329 1.21150 1.52223 1.20146 1.19717 1.00895 1.17207 0.99431 0.90479 1.25575 0.99571 1.03258 0.98523 1.69826 1.22040 1.49573 1.20616 0.85072 0.78238 0.78178 0.78277 1.18984 1.22150 1.22040 1.23330 0.99904 0.94359 0.99363 0.90905 0.89377 0.90402 0.79943 0.81640 0.81793 0.82597 0.85039 0.75236 0.91137 0.90507 0.90644 0.88887 0.93846 0.91894 0.79448 0.94037 0.92279 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 8.68 71.24 0.62 -1.41 16 2 C -0.10 -2.27 5.89 -19.77 -0.12 -2.39 16 3 C -0.06 -0.93 9.50 22.48 0.21 -0.72 16 4 C -0.09 -1.72 5.75 -21.22 -0.12 -1.85 16 5 C -0.10 -1.13 9.77 22.31 0.22 -0.92 16 6 C -0.10 -0.99 9.95 22.07 0.22 -0.77 16 7 C -0.10 -1.27 9.94 22.04 0.22 -1.05 16 8 C -0.11 -2.26 9.99 22.38 0.22 -2.04 16 9 C 0.09 2.17 6.61 40.48 0.27 2.44 16 10 N -0.46 -12.91 9.48 -177.78 -1.69 -14.59 16 11 C 0.09 2.46 6.75 42.29 0.29 2.75 16 12 C 0.56 16.59 7.75 86.91 0.67 17.26 16 13 O -0.55 -17.38 13.22 -3.71 -0.05 -17.43 16 14 N -0.70 -19.99 5.54 -465.56 -2.58 -22.57 16 15 C 0.14 3.77 5.50 86.38 0.47 4.24 16 16 C -0.11 -3.23 3.62 -10.27 -0.04 -3.27 16 17 C -0.15 -5.22 7.44 31.18 0.23 -4.99 16 18 C 0.14 5.67 4.57 45.58 0.21 5.88 16 19 N -0.72 -36.52 5.31 -320.16 -1.70 -38.22 16 20 C -0.24 -13.45 9.97 84.03 0.84 -12.62 16 21 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 23 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 24 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 C -0.13 -4.08 7.39 31.12 0.23 -3.85 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.07 8.04 -2.39 -0.02 1.05 16 31 H 0.08 1.84 5.81 -2.39 -0.01 1.83 16 32 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.41 11.90 7.79 -92.70 -0.72 11.18 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.00 7.87 -2.38 -0.02 1.98 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.09 2.68 7.92 -2.39 -0.02 2.66 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 44 H 0.37 20.35 7.90 -92.71 -0.73 19.62 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.11 2.77 8.10 -2.39 -0.02 2.75 16 Total: -1.00 -72.26 390.70 0.96 -71.30 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.45 Total: 39.82 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.11 Total: -7.29 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.68 Total: -134.90 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.05 Total: -17.43 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -72.26 0.96 -71.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091151215.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.628 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds