Wall clock time and date at job start Tue Mar 31 2020 22:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39914 * 126.00130 * 2 1 4 4 C 1.38320 * 107.12693 * 179.97438 * 3 2 1 5 5 C 1.41354 * 131.72815 * 180.02562 * 4 3 2 6 6 C 1.35524 * 119.54770 * 179.74458 * 5 4 3 7 7 C 1.46449 * 118.96279 * 0.52301 * 6 5 4 8 8 C 1.47496 * 120.20190 * 179.72715 * 7 6 5 9 9 O 1.21605 * 119.99909 * 179.72654 * 8 7 6 10 10 N 1.34777 * 119.99975 * 359.72899 * 8 7 6 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.55790 * 37.53301 * 11 10 8 13 13 C 1.54849 * 110.62554 * 160.60850 * 11 10 8 14 14 C 1.56309 * 103.40419 * 118.36287 * 13 11 10 15 15 H 1.08995 * 115.71471 * 158.93272 * 14 13 11 16 16 C 1.55850 * 105.07760 * 288.42276 * 14 13 11 17 17 C 1.54227 * 103.56215 * 71.69264 * 16 14 13 18 18 C 1.55841 * 110.62370 * 274.63217 * 11 10 8 19 19 H 1.09001 * 115.56162 * 82.69900 * 18 11 10 20 20 N 1.50232 * 101.05234 * 208.57251 * 18 11 10 21 21 C 1.36938 * 130.84205 * 233.93591 * 20 18 11 22 22 H 1.08000 * 119.99618 * 10.26231 * 21 20 18 23 23 C 1.38805 * 120.00229 * 190.26669 * 21 20 18 24 24 N 1.31619 * 120.00463 * 200.95916 * 23 21 20 25 25 Si 1.86803 * 119.99990 * 20.96213 * 23 21 20 26 26 H 1.48500 * 109.46893 * 270.00022 * 25 23 21 27 27 H 1.48498 * 109.47341 * 149.99955 * 25 23 21 28 28 H 1.48500 * 109.47020 * 29.99813 * 25 23 21 29 29 C 1.36307 * 119.59851 * 359.45803 * 7 6 5 30 30 N 1.36530 * 120.65272 * 0.27164 * 29 7 6 31 31 C 1.35279 * 125.99761 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47168 * 270.00039 * 1 2 3 33 33 H 1.09001 * 109.46948 * 30.00375 * 1 2 3 34 34 H 1.09005 * 109.46485 * 150.00123 * 1 2 3 35 35 H 1.07999 * 126.43332 * 359.97438 * 3 2 1 36 36 H 1.07995 * 120.22992 * 0.02562 * 5 4 3 37 37 H 1.08006 * 120.51850 * 180.27098 * 6 5 4 38 38 H 0.96998 * 119.99985 * 359.97438 * 10 8 7 39 39 H 1.08995 * 110.62853 * 236.97397 * 13 11 10 40 40 H 1.09001 * 110.62998 * 0.02562 * 13 11 10 41 41 H 1.09001 * 110.61998 * 190.09049 * 16 14 13 42 42 H 1.08992 * 110.63057 * 312.95562 * 16 14 13 43 43 H 1.09002 * 110.63979 * 241.43024 * 17 16 14 44 44 H 1.09001 * 110.49553 * 118.49403 * 17 16 14 45 45 H 0.97006 * 119.99557 * 354.93620 * 24 23 21 46 46 H 1.08002 * 119.67658 * 180.30130 * 29 7 6 47 47 H 1.07999 * 125.52964 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1319 0.0000 4 6 3.6383 0.6844 0.0006 5 6 4.8698 1.3783 0.0013 6 6 6.0308 0.6792 0.0071 7 6 5.9774 -0.7843 0.0007 8 6 7.2242 -1.5723 0.0006 9 8 7.1755 -2.7874 0.0003 10 7 8.4174 -0.9456 0.0009 11 6 9.6558 -1.7283 0.0003 12 1 9.5470 -2.6164 -0.6220 13 6 10.8472 -0.8638 -0.4804 14 6 11.8067 -0.8509 0.7535 15 1 12.8486 -0.6124 0.5399 16 6 11.0984 0.0515 1.8084 17 6 9.9114 -0.8110 2.2835 18 6 10.0570 -2.1221 1.4537 19 1 9.5580 -3.0032 1.8570 20 7 11.5508 -2.2167 1.3246 21 6 12.4141 -3.2328 1.6368 22 1 12.0292 -4.2090 1.8922 23 6 13.7838 -3.0080 1.6251 24 7 14.6161 -4.0214 1.5123 25 14 14.4459 -1.2673 1.7698 26 1 14.5884 -0.6777 0.4143 27 1 15.7712 -1.2958 2.4391 28 1 13.5044 -0.4445 2.5709 29 6 4.7684 -1.4139 0.0003 30 7 3.6085 -0.6936 0.0004 31 6 2.3021 -1.0945 0.0005 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3632 -0.8901 -0.5139 35 1 2.0035 2.1615 -0.0004 36 1 4.8855 2.4581 0.0019 37 1 6.9806 1.1934 0.0121 38 1 8.4562 0.0236 0.0008 39 1 11.3320 -1.3231 -1.3418 40 1 10.5168 0.1474 -0.7179 41 1 11.7690 0.2690 2.6397 42 1 10.7459 0.9750 1.3491 43 1 8.9650 -0.3184 2.0604 44 1 9.9945 -1.0202 3.3500 45 1 14.2766 -4.9301 1.5112 46 1 4.7275 -2.4931 0.0006 47 1 1.9599 -2.1188 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095510022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:43 Heat of formation + Delta-G solvation = 96.535064 kcal Electronic energy + Delta-G solvation = -29058.306637 eV Core-core repulsion = 25208.724940 eV Total energy + Delta-G solvation = -3849.581697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41571 -40.36060 -38.79652 -36.49380 -34.34412 -33.45728 -32.52042 -31.74913 -29.75916 -29.32118 -28.65020 -28.07005 -27.18732 -24.02560 -23.30556 -22.73360 -21.79982 -21.01197 -20.23095 -19.83178 -18.86117 -18.15971 -17.52210 -16.93937 -16.43025 -16.08766 -15.81512 -15.76788 -15.02499 -14.79656 -14.64838 -14.22606 -13.98745 -13.51669 -13.42522 -13.39031 -13.24086 -13.19980 -12.57560 -12.43456 -12.04335 -11.93995 -11.84872 -11.76723 -11.51096 -11.34557 -11.23141 -11.17202 -10.77680 -10.66878 -10.36527 -10.10442 -9.91839 -9.68185 -9.47381 -9.19349 -8.94364 -8.66325 -8.50085 -7.68770 -7.22996 -6.31437 -3.19077 0.46047 0.86824 2.31288 2.41087 2.81746 3.26439 3.32346 3.46832 3.47628 3.63961 4.18474 4.38328 4.48464 4.56937 4.61390 4.65939 4.74480 4.90540 4.96158 5.13958 5.19220 5.22163 5.35892 5.36173 5.39581 5.47559 5.57796 5.60467 5.64977 5.67803 5.74003 5.75591 5.80069 5.90260 5.93790 5.95293 6.12618 6.20785 6.26715 6.35232 6.39860 6.56571 6.58998 6.63880 6.69011 6.84949 6.87629 6.96118 7.39909 7.57224 8.23712 8.28289 8.99191 9.52124 10.30915 11.17707 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.002389 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.397402 B =11715.151802 C =12183.963987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.116 4.116 3 C -0.199 4.199 4 C 0.046 3.954 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.165 4.165 8 C 0.567 3.433 9 O -0.539 6.539 10 N -0.704 5.704 11 C 0.131 3.869 12 H 0.090 0.910 13 C -0.134 4.134 14 C 0.118 3.882 15 H 0.097 0.903 16 C -0.138 4.138 17 C -0.131 4.131 18 C 0.134 3.866 19 H 0.092 0.908 20 N -0.601 5.601 21 C -0.310 4.310 22 H 0.079 0.921 23 C -0.025 4.025 24 N -0.927 5.927 25 Si 1.061 2.939 26 H -0.295 1.295 27 H -0.301 1.301 28 H -0.276 1.276 29 C 0.129 3.871 30 N -0.354 5.354 31 C -0.050 4.050 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.396 0.604 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.175 0.825 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.831 14.013 -4.162 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.223 4.223 4 C -0.058 4.058 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.171 4.171 8 C 0.353 3.647 9 O -0.418 6.418 10 N -0.354 5.354 11 C 0.025 3.975 12 H 0.108 0.892 13 C -0.174 4.174 14 C 0.012 3.988 15 H 0.114 0.886 16 C -0.177 4.177 17 C -0.171 4.171 18 C 0.025 3.975 19 H 0.110 0.890 20 N -0.324 5.324 21 C -0.437 4.437 22 H 0.097 0.903 23 C -0.225 4.225 24 N -0.568 5.568 25 Si 0.895 3.105 26 H -0.225 1.225 27 H -0.229 1.229 28 H -0.202 1.202 29 C 0.006 3.994 30 N -0.019 5.019 31 C -0.176 4.176 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.192 0.808 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.164 13.616 -4.106 27.181 hybrid contribution -1.298 -0.460 0.060 1.379 sum -24.462 13.156 -4.046 28.068 Atomic orbital electron populations 1.20219 0.89364 1.02467 1.02030 1.19508 0.95904 0.92126 1.04525 1.20991 0.89543 0.98835 1.12970 1.18945 0.95641 0.81862 1.09399 1.20477 0.89186 1.00225 1.01032 1.21991 0.98735 0.91467 1.00146 1.20341 0.92849 0.93855 1.10102 1.17637 0.83029 0.87085 0.76918 1.90820 1.87277 1.13321 1.50376 1.46045 1.05553 1.10064 1.73760 1.22593 0.81012 0.94121 0.99777 0.89240 1.23229 0.96349 0.98206 0.99632 1.23306 0.96822 0.87013 0.91702 0.88577 1.23057 0.97912 0.96975 0.99801 1.22816 0.96773 0.97498 1.00003 1.23162 0.86358 0.95532 0.92471 0.88956 1.46840 1.00775 1.12562 1.72229 1.20096 0.88048 0.89113 1.46413 0.90349 1.25785 0.91435 1.05998 0.99232 1.70908 1.36468 0.99431 1.49970 0.83887 0.75226 0.75354 0.76042 1.22457 1.22891 1.20219 1.21738 0.83108 0.98322 0.96214 1.41441 1.05419 1.07067 1.47939 1.21746 0.79698 1.00114 1.16078 0.91459 0.91505 0.91771 0.83690 0.83619 0.84394 0.76844 0.90831 0.91825 0.91486 0.92635 0.92551 0.92423 0.92766 0.80797 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.37 36.01 0.37 -0.12 16 2 C -0.12 -1.03 6.10 -105.05 -0.64 -1.67 16 3 C -0.20 -1.86 10.91 -38.92 -0.42 -2.29 16 4 C 0.05 0.48 6.71 -83.95 -0.56 -0.09 16 5 C -0.09 -0.79 10.09 -39.37 -0.40 -1.19 16 6 C -0.10 -0.94 9.73 -37.25 -0.36 -1.30 16 7 C -0.17 -1.92 5.98 -103.52 -0.62 -2.54 16 8 C 0.57 8.11 7.76 -12.49 -0.10 8.02 16 9 O -0.54 -9.73 16.02 5.27 0.08 -9.65 16 10 N -0.70 -9.33 3.58 -52.45 -0.19 -9.51 16 11 C 0.13 2.22 3.07 -65.44 -0.20 2.02 16 12 H 0.09 1.73 7.71 -51.93 -0.40 1.33 16 13 C -0.13 -2.21 6.22 -23.98 -0.15 -2.36 16 14 C 0.12 2.37 3.61 -62.54 -0.23 2.14 16 15 H 0.10 2.06 3.44 -51.93 -0.18 1.88 16 16 C -0.14 -2.35 6.20 -24.57 -0.15 -2.50 16 17 C -0.13 -2.22 6.29 -24.57 -0.15 -2.37 16 18 C 0.13 2.66 5.34 -62.81 -0.34 2.32 16 19 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 20 N -0.60 -14.25 2.83 -145.55 -0.41 -14.67 16 21 C -0.31 -8.78 10.81 -15.06 -0.16 -8.94 16 22 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 23 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 24 N -0.93 -29.02 13.70 55.49 0.76 -28.26 16 25 Si 1.06 25.85 25.01 -169.99 -4.25 21.59 16 26 H -0.30 -6.79 6.60 56.52 0.37 -6.41 16 27 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.28 -6.13 4.94 56.52 0.28 -5.85 16 29 C 0.13 1.46 10.45 -16.16 -0.17 1.29 16 30 N -0.35 -3.83 2.93 -60.50 -0.18 -4.01 16 31 C -0.05 -0.47 11.49 -16.46 -0.19 -0.66 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 0.92 6.58 -52.48 -0.35 0.58 16 38 H 0.40 4.07 6.13 -40.82 -0.25 3.81 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.81 7.35 -51.93 -0.38 0.43 16 41 H 0.07 1.23 6.51 -51.93 -0.34 0.89 16 42 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 43 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 46 H 0.17 1.85 7.56 -52.49 -0.40 1.45 16 47 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -34.19 368.78 -9.76 -43.94 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.57 Total: 6.07 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.57 Total: -11.07 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.02 Total: -56.45 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.25 Total: 21.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.19 -9.76 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095510022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.478 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds