Wall clock time and date at job start Tue Mar 31 2020 22:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39914 * 126.00130 * 2 1 4 4 C 1.38320 * 107.12693 * 179.97438 * 3 2 1 5 5 C 1.41354 * 131.72815 * 180.02562 * 4 3 2 6 6 C 1.35524 * 119.54770 * 179.74458 * 5 4 3 7 7 C 1.46449 * 118.96279 * 0.52301 * 6 5 4 8 8 C 1.47496 * 120.20190 * 179.72715 * 7 6 5 9 9 O 1.21605 * 119.99909 * 179.72654 * 8 7 6 10 10 N 1.34777 * 119.99975 * 359.72899 * 8 7 6 11 11 C 1.46500 * 119.99992 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.55790 * 37.53301 * 11 10 8 13 13 C 1.54849 * 110.62554 * 160.60850 * 11 10 8 14 14 C 1.56309 * 103.40419 * 118.36287 * 13 11 10 15 15 H 1.08995 * 115.71471 * 158.93272 * 14 13 11 16 16 C 1.55850 * 105.07760 * 288.42276 * 14 13 11 17 17 C 1.54227 * 103.56215 * 71.69264 * 16 14 13 18 18 C 1.55841 * 110.62370 * 274.63217 * 11 10 8 19 19 H 1.09001 * 115.56162 * 82.69900 * 18 11 10 20 20 N 1.50232 * 101.05234 * 208.57251 * 18 11 10 21 21 C 1.36938 * 130.84205 * 233.93591 * 20 18 11 22 22 H 1.08000 * 119.99618 * 10.26231 * 21 20 18 23 23 C 1.38805 * 120.00229 * 190.26669 * 21 20 18 24 24 N 1.31619 * 120.00463 * 200.95916 * 23 21 20 25 25 Si 1.86803 * 119.99990 * 20.96213 * 23 21 20 26 26 H 1.48500 * 109.46893 * 270.00022 * 25 23 21 27 27 H 1.48498 * 109.47341 * 149.99955 * 25 23 21 28 28 H 1.48500 * 109.47020 * 29.99813 * 25 23 21 29 29 C 1.36307 * 119.59851 * 359.45803 * 7 6 5 30 30 N 1.36530 * 120.65272 * 0.27164 * 29 7 6 31 31 C 1.35279 * 125.99761 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47168 * 270.00039 * 1 2 3 33 33 H 1.09001 * 109.46948 * 30.00375 * 1 2 3 34 34 H 1.09005 * 109.46485 * 150.00123 * 1 2 3 35 35 H 1.07999 * 126.43332 * 359.97438 * 3 2 1 36 36 H 1.07995 * 120.22992 * 0.02562 * 5 4 3 37 37 H 1.08006 * 120.51850 * 180.27098 * 6 5 4 38 38 H 0.96998 * 119.99985 * 359.97438 * 10 8 7 39 39 H 1.08995 * 110.62853 * 236.97397 * 13 11 10 40 40 H 1.09001 * 110.62998 * 0.02562 * 13 11 10 41 41 H 1.09001 * 110.61998 * 190.09049 * 16 14 13 42 42 H 1.08992 * 110.63057 * 312.95562 * 16 14 13 43 43 H 1.09002 * 110.63979 * 241.43024 * 17 16 14 44 44 H 1.09001 * 110.49553 * 118.49403 * 17 16 14 45 45 H 0.97006 * 119.99557 * 354.93620 * 24 23 21 46 46 H 1.08002 * 119.67658 * 180.30130 * 29 7 6 47 47 H 1.07999 * 125.52964 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1319 0.0000 4 6 3.6383 0.6844 0.0006 5 6 4.8698 1.3783 0.0013 6 6 6.0308 0.6792 0.0071 7 6 5.9774 -0.7843 0.0007 8 6 7.2242 -1.5723 0.0006 9 8 7.1755 -2.7874 0.0003 10 7 8.4174 -0.9456 0.0009 11 6 9.6558 -1.7283 0.0003 12 1 9.5470 -2.6164 -0.6220 13 6 10.8472 -0.8638 -0.4804 14 6 11.8067 -0.8509 0.7535 15 1 12.8486 -0.6124 0.5399 16 6 11.0984 0.0515 1.8084 17 6 9.9114 -0.8110 2.2835 18 6 10.0570 -2.1221 1.4537 19 1 9.5580 -3.0032 1.8570 20 7 11.5508 -2.2167 1.3246 21 6 12.4141 -3.2328 1.6368 22 1 12.0292 -4.2090 1.8922 23 6 13.7838 -3.0080 1.6251 24 7 14.6161 -4.0214 1.5123 25 14 14.4459 -1.2673 1.7698 26 1 14.5884 -0.6777 0.4143 27 1 15.7712 -1.2958 2.4391 28 1 13.5044 -0.4445 2.5709 29 6 4.7684 -1.4139 0.0003 30 7 3.6085 -0.6936 0.0004 31 6 2.3021 -1.0945 0.0005 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3632 -0.8901 -0.5139 35 1 2.0035 2.1615 -0.0004 36 1 4.8855 2.4581 0.0019 37 1 6.9806 1.1934 0.0121 38 1 8.4562 0.0236 0.0008 39 1 11.3320 -1.3231 -1.3418 40 1 10.5168 0.1474 -0.7179 41 1 11.7690 0.2690 2.6397 42 1 10.7459 0.9750 1.3491 43 1 8.9650 -0.3184 2.0604 44 1 9.9945 -1.0202 3.3500 45 1 14.2766 -4.9301 1.5112 46 1 4.7275 -2.4931 0.0006 47 1 1.9599 -2.1188 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095510022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:42 Heat of formation + Delta-G solvation = 75.690081 kcal Electronic energy + Delta-G solvation = -29059.210543 eV Core-core repulsion = 25208.724940 eV Total energy + Delta-G solvation = -3850.485603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.12737 -41.71268 -40.09138 -37.27366 -35.71702 -34.60329 -34.10914 -32.49186 -31.36141 -30.87219 -29.94401 -28.86604 -27.96604 -25.66053 -24.38565 -23.50840 -23.01429 -22.14985 -21.79679 -20.74344 -20.37195 -19.43930 -18.93739 -17.99118 -17.60903 -17.21934 -17.04634 -16.66025 -16.30183 -15.71355 -15.61579 -15.34158 -15.26615 -15.17586 -14.97984 -14.09820 -14.02563 -13.89214 -13.80322 -13.51557 -13.45792 -13.14550 -13.05645 -12.97280 -12.63721 -12.58352 -12.48932 -12.33085 -11.92871 -11.90135 -11.54503 -11.46990 -11.39160 -11.19713 -11.11001 -11.04751 -10.73348 -10.12226 -9.35413 -9.21752 -8.61935 -8.38799 -5.40620 -0.36609 0.18733 1.37086 1.51271 1.56061 1.60583 1.73149 2.00182 2.18885 2.56366 2.61503 3.02157 3.21735 3.46635 3.57643 3.73686 3.81212 3.84999 3.88801 3.94916 3.99928 4.22137 4.28060 4.32258 4.39972 4.43507 4.52098 4.56320 4.63811 4.70170 4.76087 4.82634 4.89521 4.94635 4.99161 5.03152 5.05713 5.07720 5.17885 5.24966 5.28267 5.33283 5.34339 5.51206 5.54527 5.58859 5.92611 5.96869 6.03303 6.23517 6.50354 6.76103 7.16400 7.38941 8.23630 8.88189 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.002389 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.397402 B =11715.151802 C =12183.963987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.021 3.979 5 C -0.084 4.084 6 C -0.107 4.107 7 C -0.172 4.172 8 C 0.568 3.432 9 O -0.587 6.587 10 N -0.685 5.685 11 C 0.147 3.853 12 H 0.056 0.944 13 C -0.121 4.121 14 C 0.101 3.899 15 H 0.087 0.913 16 C -0.129 4.129 17 C -0.119 4.119 18 C 0.119 3.881 19 H 0.058 0.942 20 N -0.632 5.632 21 C -0.296 4.296 22 H 0.031 0.969 23 C -0.089 4.089 24 N -0.966 5.966 25 Si 1.106 2.894 26 H -0.269 1.269 27 H -0.315 1.315 28 H -0.240 1.240 29 C 0.120 3.880 30 N -0.363 5.363 31 C -0.069 4.069 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.242 0.758 46 H 0.168 0.832 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.155 19.626 -4.842 33.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C -0.228 4.228 4 C -0.083 4.083 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.178 4.178 8 C 0.357 3.643 9 O -0.469 6.469 10 N -0.337 5.337 11 C 0.040 3.960 12 H 0.074 0.926 13 C -0.161 4.161 14 C -0.003 4.003 15 H 0.104 0.896 16 C -0.168 4.168 17 C -0.158 4.158 18 C 0.011 3.989 19 H 0.076 0.924 20 N -0.357 5.357 21 C -0.424 4.424 22 H 0.049 0.951 23 C -0.281 4.281 24 N -0.610 5.610 25 Si 0.932 3.068 26 H -0.197 1.197 27 H -0.245 1.245 28 H -0.164 1.164 29 C -0.003 4.003 30 N -0.029 5.029 31 C -0.195 4.195 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.188 0.812 38 H 0.258 0.742 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.185 0.815 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -25.579 19.305 -4.804 32.405 hybrid contribution -0.844 -2.342 0.260 2.503 sum -26.423 16.964 -4.544 31.727 Atomic orbital electron populations 1.20287 0.87450 1.03421 1.02766 1.19944 0.97327 0.91838 1.03520 1.21385 0.89327 0.99942 1.12127 1.19492 0.96955 0.81800 1.10058 1.20885 0.88193 1.01764 0.99409 1.22225 1.00401 0.89699 1.00384 1.20147 0.91151 0.95195 1.11325 1.18057 0.84034 0.86633 0.75620 1.90809 1.87955 1.15727 1.52363 1.45708 1.03886 1.10799 1.73345 1.22046 0.83035 0.94011 0.96865 0.92621 1.23177 0.94530 1.00866 0.97509 1.23649 0.97585 0.85125 0.93981 0.89569 1.23056 0.96897 0.98203 0.98596 1.22735 0.98965 0.95551 0.98533 1.23302 0.84118 0.96317 0.95141 0.92416 1.46890 1.01970 1.13503 1.73319 1.19863 0.89179 0.88946 1.44423 0.95100 1.27277 0.92061 1.09319 0.99404 1.71046 1.37137 0.99045 1.53805 0.83405 0.74450 0.71241 0.77665 1.19689 1.24479 1.16429 1.21732 0.83787 0.98347 0.96458 1.41568 1.05436 1.07497 1.48362 1.22223 0.79560 1.01350 1.16349 0.90735 0.90473 0.90950 0.81667 0.80338 0.81209 0.74242 0.91877 0.86237 0.92478 0.86928 0.88792 0.93750 0.94857 0.81510 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.37 71.24 0.74 -0.05 16 2 C -0.12 -1.93 6.10 -20.14 -0.12 -2.05 16 3 C -0.20 -3.26 10.91 22.70 0.25 -3.01 16 4 C 0.02 0.37 6.71 38.98 0.26 0.64 16 5 C -0.08 -1.12 10.09 22.41 0.23 -0.90 16 6 C -0.11 -1.50 9.73 23.78 0.23 -1.27 16 7 C -0.17 -3.66 5.98 -19.15 -0.11 -3.77 16 8 C 0.57 15.56 7.76 86.68 0.67 16.23 16 9 O -0.59 -21.84 16.02 -4.05 -0.06 -21.90 16 10 N -0.69 -15.95 3.58 -438.11 -1.57 -17.52 16 11 C 0.15 4.81 3.07 46.61 0.14 4.95 16 12 H 0.06 2.21 7.71 -2.39 -0.02 2.19 16 13 C -0.12 -3.54 6.22 32.38 0.20 -3.33 16 14 C 0.10 3.74 3.61 46.40 0.17 3.90 16 15 H 0.09 3.38 3.44 -2.39 -0.01 3.38 16 16 C -0.13 -3.68 6.20 32.00 0.20 -3.48 16 17 C -0.12 -3.62 6.29 31.99 0.20 -3.42 16 18 C 0.12 4.74 5.34 46.23 0.25 4.98 16 19 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 20 N -0.63 -30.26 2.83 -614.40 -1.74 -32.00 16 21 C -0.30 -17.66 10.81 84.03 0.91 -16.75 16 22 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 23 C -0.09 -5.38 5.50 84.86 0.47 -4.92 16 24 N -0.97 -63.84 13.70 21.65 0.30 -63.55 16 25 Si 1.11 52.07 25.01 68.60 1.72 53.79 16 26 H -0.27 -11.46 6.60 99.48 0.66 -10.80 16 27 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 28 H -0.24 -9.77 4.94 99.48 0.49 -9.28 16 29 C 0.12 2.66 10.45 83.51 0.87 3.53 16 30 N -0.36 -7.42 2.93 -345.32 -1.01 -8.43 16 31 C -0.07 -1.22 11.49 83.26 0.96 -0.27 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.17 1.16 6.58 -2.91 -0.02 1.14 16 38 H 0.42 6.05 6.13 -92.71 -0.57 5.48 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.12 2.18 7.35 -2.39 -0.02 2.16 16 41 H 0.06 1.79 6.51 -2.39 -0.02 1.77 16 42 H 0.11 2.03 7.83 -2.39 -0.02 2.01 16 43 H 0.09 2.16 6.50 -2.39 -0.02 2.15 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.24 16.31 8.73 -92.70 -0.81 15.50 16 46 H 0.17 3.74 7.56 -2.91 -0.02 3.72 16 47 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -83.13 368.78 4.26 -78.87 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.13 Total: 19.72 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 6.50 Total: -8.98 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -4.03 Total: -121.50 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 1.72 Total: 53.79 kcal Total: -83.13 4.26 -78.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095510022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.565 kcal (2) G-P(sol) polarization free energy of solvation -83.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds