Wall clock time and date at job start Tue Mar 31 2020 22:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38944 * 119.67429 * 2 1 4 4 C 1.36437 * 120.61811 * 180.02562 * 3 2 1 5 5 C 1.40109 * 119.82414 * 359.92720 * 4 3 2 6 6 C 1.41590 * 133.37219 * 180.02562 * 5 4 3 7 7 C 1.35863 * 107.72353 * 179.97438 * 6 5 4 8 8 C 1.47056 * 125.42951 * 179.97438 * 7 6 5 9 9 O 1.21647 * 120.00271 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00126 * 180.29812 * 8 7 6 11 11 C 1.46497 * 120.00188 * 179.72166 * 10 8 7 12 12 H 1.09001 * 110.55767 * 37.01134 * 11 10 8 13 13 C 1.54863 * 110.62431 * 160.07502 * 11 10 8 14 14 C 1.55847 * 103.44082 * 118.49197 * 13 11 10 15 15 H 1.08999 * 115.55557 * 158.81472 * 14 13 11 16 16 C 1.55837 * 105.74331 * 287.98709 * 14 13 11 17 17 C 1.57716 * 103.12184 * 70.91372 * 16 14 13 18 18 C 1.55839 * 102.67889 * 1.20096 * 17 16 14 19 19 H 1.09001 * 115.55720 * 158.49757 * 18 17 16 20 20 N 1.50239 * 101.75603 * 32.10204 * 18 17 16 21 21 C 1.36928 * 130.84121 * 125.85575 * 20 18 17 22 22 H 1.08000 * 120.00141 * 10.19061 * 21 20 18 23 23 C 1.38814 * 120.00248 * 190.18500 * 21 20 18 24 24 N 1.31619 * 120.00083 * 9.09102 * 23 21 20 25 25 Si 1.86802 * 120.00240 * 189.09310 * 23 21 20 26 26 H 1.48504 * 109.46882 * 84.98502 * 25 23 21 27 27 H 1.48491 * 109.47083 * 204.99028 * 25 23 21 28 28 H 1.48504 * 109.46932 * 324.98949 * 25 23 21 29 29 N 1.38150 * 109.13859 * 0.22573 * 7 6 5 30 30 H 0.97000 * 125.60322 * 179.77091 * 29 7 6 31 31 C 1.37479 * 108.78630 * 359.62380 * 29 7 6 32 32 C 1.37661 * 119.67744 * 179.97438 * 2 1 3 33 33 H 1.09008 * 109.46873 * 270.02255 * 1 2 3 34 34 H 1.08996 * 109.47012 * 30.02372 * 1 2 3 35 35 H 1.08994 * 109.46971 * 150.02618 * 1 2 3 36 36 H 1.08005 * 119.69204 * 0.02562 * 3 2 1 37 37 H 1.07992 * 120.08711 * 180.02562 * 4 3 2 38 38 H 1.08005 * 126.13823 * 0.02562 * 6 5 4 39 39 H 0.97006 * 119.99425 * 359.72994 * 10 8 7 40 40 H 1.08994 * 110.62747 * 236.98232 * 13 11 10 41 41 H 1.08998 * 110.62824 * 0.02562 * 13 11 10 42 42 H 1.09000 * 110.63178 * 190.50076 * 16 14 13 43 43 H 1.08999 * 110.63144 * 313.52896 * 16 14 13 44 44 H 1.09004 * 111.90664 * 242.53672 * 17 16 14 45 45 H 1.09000 * 110.06965 * 119.02248 * 17 16 14 46 46 H 0.96993 * 120.00014 * 179.97438 * 24 23 21 47 47 H 1.08001 * 120.09483 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2297 -0.0005 5 6 4.2759 0.0258 0.0005 6 6 5.6576 -0.2832 0.0008 7 6 5.7789 -1.6364 0.0024 8 6 7.0484 -2.3785 0.0027 9 8 8.1052 -1.7761 0.0019 10 7 7.0411 -3.7263 -0.0016 11 6 8.3059 -4.4656 -0.0075 12 1 9.0493 -3.9572 0.6065 13 6 8.0904 -5.9189 0.4824 14 6 8.5123 -6.7812 -0.7453 15 1 8.7832 -7.8136 -0.5239 16 6 7.3820 -6.5945 -1.8017 17 6 7.5864 -5.1074 -2.2857 18 6 8.8285 -4.6480 -1.4642 19 1 9.3779 -3.8015 -1.8762 20 7 9.6010 -5.9301 -1.3347 21 6 10.8981 -6.2302 -1.6549 22 1 11.5854 -5.4406 -1.9201 23 6 11.3295 -7.5495 -1.6386 24 7 10.4582 -8.5251 -1.4924 25 14 13.1468 -7.9403 -1.8242 26 1 13.8091 -7.8562 -0.4977 27 1 13.3048 -9.3120 -2.3704 28 1 13.7710 -6.9631 -2.7520 29 7 4.5194 -2.2040 -0.0019 30 1 4.3285 -3.1550 -0.0049 31 6 3.5810 -1.1992 0.0021 32 6 2.1886 -1.1960 0.0005 33 1 -0.3633 0.0004 1.0278 34 1 -0.3633 0.8897 -0.5142 35 1 -0.3633 -0.8902 -0.5134 36 1 1.6446 2.1365 0.0004 37 1 4.0850 2.1729 -0.0001 38 1 6.4696 0.4291 0.0006 39 1 6.1984 -4.2067 -0.0009 40 1 8.7282 -6.1336 1.3398 41 1 7.0426 -6.0895 0.7292 42 1 7.4999 -7.3048 -2.6200 43 1 6.4014 -6.7008 -1.3378 44 1 6.7226 -4.4830 -2.0573 45 1 7.8037 -5.0881 -3.3536 46 1 10.7597 -9.4470 -1.4814 47 1 1.6449 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095831186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:15 Heat of formation + Delta-G solvation = 67.493027 kcal Electronic energy + Delta-G solvation = -28880.308661 eV Core-core repulsion = 25029.467607 eV Total energy + Delta-G solvation = -3850.841054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74705 -39.93158 -38.38268 -37.29833 -34.14763 -32.87798 -32.32399 -30.90875 -29.72917 -29.25138 -29.06808 -27.92671 -26.54244 -24.33939 -23.42803 -22.22436 -21.46310 -21.06395 -20.19151 -19.56009 -18.83866 -18.34498 -17.03390 -16.90825 -15.87176 -15.60689 -15.37623 -15.00654 -14.93379 -14.60614 -14.15309 -14.09592 -13.94996 -13.85097 -13.63645 -13.45358 -12.92303 -12.45878 -12.40157 -12.36473 -11.93624 -11.80368 -11.56322 -11.43992 -11.13969 -11.11119 -10.95950 -10.93670 -10.85091 -10.26862 -10.12090 -10.08471 -9.99618 -9.88044 -9.54757 -9.34409 -8.90961 -8.66403 -8.39127 -7.91185 -6.93587 -5.80068 -3.15127 0.59966 1.39538 1.99750 2.71429 3.21490 3.37272 3.38805 3.43768 3.44886 3.65456 4.41377 4.43077 4.61576 4.69735 4.85470 4.95347 5.11844 5.13795 5.19642 5.30009 5.30960 5.35901 5.44974 5.48435 5.60187 5.72573 5.76306 5.78145 5.81738 5.87037 5.99552 6.05693 6.17264 6.23797 6.26399 6.27925 6.42275 6.46227 6.49830 6.50170 6.54604 6.72683 6.84426 6.90717 6.93273 7.16563 7.20775 7.48025 7.59839 7.71749 8.06654 8.26230 9.04030 9.67971 10.50029 11.32536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002290 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.439811 B =12226.194341 C =12792.471113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.057 4.057 5 C -0.122 4.122 6 C -0.112 4.112 7 C 0.025 3.975 8 C 0.576 3.424 9 O -0.521 6.521 10 N -0.708 5.708 11 C 0.129 3.871 12 H 0.086 0.914 13 C -0.143 4.143 14 C 0.160 3.840 15 H 0.141 0.859 16 C -0.129 4.129 17 C -0.134 4.134 18 C 0.128 3.872 19 H 0.087 0.913 20 N -0.587 5.587 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 N -0.578 5.578 30 H 0.417 0.583 31 C 0.115 3.885 32 C -0.134 4.134 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.390 0.610 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.254 0.746 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.456 13.953 4.408 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.169 4.169 4 C -0.076 4.076 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.085 4.085 8 C 0.362 3.638 9 O -0.397 6.397 10 N -0.358 5.358 11 C 0.023 3.977 12 H 0.104 0.896 13 C -0.183 4.183 14 C 0.053 3.947 15 H 0.158 0.842 16 C -0.168 4.168 17 C -0.173 4.173 18 C 0.019 3.981 19 H 0.105 0.895 20 N -0.307 5.307 21 C -0.342 4.342 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.745 3.255 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 N -0.183 5.183 30 H 0.255 0.745 31 C 0.005 3.995 32 C -0.155 4.155 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.173 0.827 39 H 0.224 0.776 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.322 13.974 4.342 24.238 hybrid contribution 0.338 -0.971 -0.162 1.041 sum -18.985 13.003 4.180 23.387 Atomic orbital electron populations 1.20788 0.90971 1.02827 1.02353 1.19593 0.95766 0.92250 0.98486 1.20507 0.93923 0.97355 1.05077 1.20393 0.93647 0.96297 0.97258 1.18210 0.93093 0.92879 1.08512 1.20907 0.95345 0.93301 1.04335 1.20366 0.84085 0.93496 1.10536 1.17204 0.86942 0.82236 0.77464 1.90856 1.30521 1.68445 1.49877 1.46170 1.10228 1.05481 1.73896 1.22727 0.83375 0.91695 0.99876 0.89556 1.23314 0.99420 0.94586 1.00984 1.23374 0.85552 0.97745 0.88032 0.84209 1.23453 0.97458 0.95458 1.00442 1.23401 0.97821 0.96527 0.99579 1.23166 0.91486 0.91051 0.92432 0.89536 1.46432 1.08109 1.05356 1.70822 1.19023 0.83766 0.92045 1.39382 0.90358 1.24762 0.98043 0.95262 1.02511 1.69661 1.31869 0.98671 1.56395 0.86087 0.84360 0.77270 0.77774 1.21535 1.21736 1.20703 1.41961 1.04167 1.08069 1.64075 0.74479 1.18283 0.90743 0.87721 1.02745 1.19880 0.89715 0.98370 1.07545 0.91100 0.91375 0.91581 0.85989 0.85712 0.82700 0.77629 0.91431 0.92671 0.91985 0.94138 0.93223 0.92980 0.93592 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.99 36.01 0.36 -0.27 16 2 C -0.06 -0.49 5.88 -104.57 -0.61 -1.11 16 3 C -0.15 -1.26 9.61 -39.97 -0.38 -1.64 16 4 C -0.06 -0.55 10.06 -39.53 -0.40 -0.95 16 5 C -0.12 -1.43 6.16 -106.93 -0.66 -2.09 16 6 C -0.11 -1.43 10.53 -39.16 -0.41 -1.85 16 7 C 0.02 0.32 6.97 -82.29 -0.57 -0.25 16 8 C 0.58 8.90 7.79 -12.68 -0.10 8.80 16 9 O -0.52 -9.99 16.57 5.24 0.09 -9.91 16 10 N -0.71 -10.08 3.59 -52.58 -0.19 -10.27 16 11 C 0.13 2.31 3.08 -65.43 -0.20 2.11 16 12 H 0.09 1.72 7.70 -51.93 -0.40 1.32 16 13 C -0.14 -2.56 6.22 -24.23 -0.15 -2.71 16 14 C 0.16 3.48 4.57 -62.80 -0.29 3.19 16 15 H 0.14 3.50 5.91 -51.93 -0.31 3.19 16 16 C -0.13 -2.46 6.58 -22.64 -0.15 -2.60 16 17 C -0.13 -2.46 6.48 -22.64 -0.15 -2.60 16 18 C 0.13 2.64 5.30 -62.81 -0.33 2.31 16 19 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 20 N -0.59 -14.36 2.98 -145.83 -0.43 -14.80 16 21 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 22 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 23 C -0.01 -0.27 5.46 -17.43 -0.10 -0.36 16 24 N -0.92 -25.84 10.76 55.49 0.60 -25.24 16 25 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 N -0.58 -6.00 6.07 -7.36 -0.04 -6.04 16 30 H 0.42 3.21 8.12 -40.82 -0.33 2.88 16 31 C 0.12 1.26 7.25 -83.98 -0.61 0.65 16 32 C -0.13 -1.22 9.71 -39.42 -0.38 -1.61 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.07 0.32 8.08 -51.93 -0.42 -0.09 16 36 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 39 H 0.39 4.42 7.08 -40.82 -0.29 4.14 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.81 7.37 -51.93 -0.38 0.43 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 44 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -31.60 378.82 -11.24 -42.84 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.64 Total: 7.85 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -5.29 Total: -6.99 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.07 Total: -56.35 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.60 -11.24 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095831186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.334 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds