Wall clock time and date at job start Tue Mar 31 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38944 * 119.67429 * 2 1 4 4 C 1.36437 * 120.61811 * 180.02562 * 3 2 1 5 5 C 1.40109 * 119.82414 * 359.92720 * 4 3 2 6 6 C 1.41590 * 133.37219 * 180.02562 * 5 4 3 7 7 C 1.35863 * 107.72353 * 179.97438 * 6 5 4 8 8 C 1.47056 * 125.42951 * 179.97438 * 7 6 5 9 9 O 1.21647 * 120.00271 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00126 * 180.29812 * 8 7 6 11 11 C 1.46497 * 120.00188 * 179.72166 * 10 8 7 12 12 H 1.09001 * 110.55767 * 37.01134 * 11 10 8 13 13 C 1.54863 * 110.62431 * 160.07502 * 11 10 8 14 14 C 1.55847 * 103.44082 * 118.49197 * 13 11 10 15 15 H 1.08999 * 115.55557 * 158.81472 * 14 13 11 16 16 C 1.55837 * 105.74331 * 287.98709 * 14 13 11 17 17 C 1.57716 * 103.12184 * 70.91372 * 16 14 13 18 18 C 1.55839 * 102.67889 * 1.20096 * 17 16 14 19 19 H 1.09001 * 115.55720 * 158.49757 * 18 17 16 20 20 N 1.50239 * 101.75603 * 32.10204 * 18 17 16 21 21 C 1.36928 * 130.84121 * 125.85575 * 20 18 17 22 22 H 1.08000 * 120.00141 * 10.19061 * 21 20 18 23 23 C 1.38814 * 120.00248 * 190.18500 * 21 20 18 24 24 N 1.31619 * 120.00083 * 9.09102 * 23 21 20 25 25 Si 1.86802 * 120.00240 * 189.09310 * 23 21 20 26 26 H 1.48504 * 109.46882 * 84.98502 * 25 23 21 27 27 H 1.48491 * 109.47083 * 204.99028 * 25 23 21 28 28 H 1.48504 * 109.46932 * 324.98949 * 25 23 21 29 29 N 1.38150 * 109.13859 * 0.22573 * 7 6 5 30 30 H 0.97000 * 125.60322 * 179.77091 * 29 7 6 31 31 C 1.37479 * 108.78630 * 359.62380 * 29 7 6 32 32 C 1.37661 * 119.67744 * 179.97438 * 2 1 3 33 33 H 1.09008 * 109.46873 * 270.02255 * 1 2 3 34 34 H 1.08996 * 109.47012 * 30.02372 * 1 2 3 35 35 H 1.08994 * 109.46971 * 150.02618 * 1 2 3 36 36 H 1.08005 * 119.69204 * 0.02562 * 3 2 1 37 37 H 1.07992 * 120.08711 * 180.02562 * 4 3 2 38 38 H 1.08005 * 126.13823 * 0.02562 * 6 5 4 39 39 H 0.97006 * 119.99425 * 359.72994 * 10 8 7 40 40 H 1.08994 * 110.62747 * 236.98232 * 13 11 10 41 41 H 1.08998 * 110.62824 * 0.02562 * 13 11 10 42 42 H 1.09000 * 110.63178 * 190.50076 * 16 14 13 43 43 H 1.08999 * 110.63144 * 313.52896 * 16 14 13 44 44 H 1.09004 * 111.90664 * 242.53672 * 17 16 14 45 45 H 1.09000 * 110.06965 * 119.02248 * 17 16 14 46 46 H 0.96993 * 120.00014 * 179.97438 * 24 23 21 47 47 H 1.08001 * 120.09483 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2297 -0.0005 5 6 4.2759 0.0258 0.0005 6 6 5.6576 -0.2832 0.0008 7 6 5.7789 -1.6364 0.0024 8 6 7.0484 -2.3785 0.0027 9 8 8.1052 -1.7761 0.0019 10 7 7.0411 -3.7263 -0.0016 11 6 8.3059 -4.4656 -0.0075 12 1 9.0493 -3.9572 0.6065 13 6 8.0904 -5.9189 0.4824 14 6 8.5123 -6.7812 -0.7453 15 1 8.7832 -7.8136 -0.5239 16 6 7.3820 -6.5945 -1.8017 17 6 7.5864 -5.1074 -2.2857 18 6 8.8285 -4.6480 -1.4642 19 1 9.3779 -3.8015 -1.8762 20 7 9.6010 -5.9301 -1.3347 21 6 10.8981 -6.2302 -1.6549 22 1 11.5854 -5.4406 -1.9201 23 6 11.3295 -7.5495 -1.6386 24 7 10.4582 -8.5251 -1.4924 25 14 13.1468 -7.9403 -1.8242 26 1 13.8091 -7.8562 -0.4977 27 1 13.3048 -9.3120 -2.3704 28 1 13.7710 -6.9631 -2.7520 29 7 4.5194 -2.2040 -0.0019 30 1 4.3285 -3.1550 -0.0049 31 6 3.5810 -1.1992 0.0021 32 6 2.1886 -1.1960 0.0005 33 1 -0.3633 0.0004 1.0278 34 1 -0.3633 0.8897 -0.5142 35 1 -0.3633 -0.8902 -0.5134 36 1 1.6446 2.1365 0.0004 37 1 4.0850 2.1729 -0.0001 38 1 6.4696 0.4291 0.0006 39 1 6.1984 -4.2067 -0.0009 40 1 8.7282 -6.1336 1.3398 41 1 7.0426 -6.0895 0.7292 42 1 7.4999 -7.3048 -2.6200 43 1 6.4014 -6.7008 -1.3378 44 1 6.7226 -4.4830 -2.0573 45 1 7.8037 -5.0881 -3.3536 46 1 10.7597 -9.4470 -1.4814 47 1 1.6449 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095831186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:14 Heat of formation + Delta-G solvation = 49.731997 kcal Electronic energy + Delta-G solvation = -28881.078837 eV Core-core repulsion = 25029.467607 eV Total energy + Delta-G solvation = -3851.611230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61201 -41.33572 -39.73035 -38.10037 -35.62422 -34.27219 -33.54745 -31.71932 -30.96161 -30.80194 -30.37959 -29.38382 -27.42499 -26.12141 -24.41489 -23.14166 -22.85995 -21.86549 -21.56703 -20.99131 -20.27971 -19.52536 -18.77882 -17.83464 -16.93623 -16.86374 -16.70070 -16.51000 -16.05076 -15.83307 -15.69619 -15.09503 -15.05017 -14.75717 -14.59659 -14.17996 -14.10074 -13.96230 -13.64277 -13.47588 -13.25554 -12.88818 -12.87353 -12.82166 -12.67318 -12.55096 -12.39674 -12.10430 -11.99979 -11.96521 -11.78649 -11.64770 -11.41102 -11.24325 -10.95588 -10.82114 -10.79502 -10.14316 -9.15569 -8.87324 -8.69441 -7.86542 -5.22097 -0.23971 0.68469 1.07267 1.45013 1.46555 1.53965 1.83254 2.04998 2.26808 2.48282 2.92822 3.29132 3.45224 3.64829 3.76603 3.88556 4.03472 4.04443 4.12684 4.15856 4.27466 4.33548 4.40540 4.44253 4.51577 4.56679 4.65301 4.72051 4.73385 4.86923 4.92814 4.93835 4.97756 4.98897 5.06242 5.08968 5.10747 5.27846 5.32647 5.40228 5.48640 5.52912 5.57811 5.68015 5.68324 5.76778 5.82585 6.14464 6.18114 6.38503 6.53852 6.99894 7.07196 7.64908 8.53073 9.23845 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002290 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.439811 B =12226.194341 C =12792.471113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.149 4.149 6 C -0.119 4.119 7 C 0.010 3.990 8 C 0.581 3.419 9 O -0.566 6.566 10 N -0.692 5.692 11 C 0.148 3.852 12 H 0.062 0.938 13 C -0.127 4.127 14 C 0.146 3.854 15 H 0.107 0.893 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.117 3.883 19 H 0.065 0.935 20 N -0.615 5.615 21 C -0.228 4.228 22 H 0.069 0.931 23 C -0.060 4.060 24 N -0.939 5.939 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.277 1.277 29 N -0.565 5.565 30 H 0.430 0.570 31 C 0.110 3.890 32 C -0.144 4.144 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.409 0.591 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.034 0.966 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.249 0.751 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.147 14.859 4.949 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.169 4.169 4 C -0.087 4.087 5 C -0.153 4.153 6 C -0.146 4.146 7 C -0.100 4.100 8 C 0.368 3.632 9 O -0.445 6.445 10 N -0.343 5.343 11 C 0.041 3.959 12 H 0.080 0.920 13 C -0.166 4.166 14 C 0.040 3.960 15 H 0.125 0.875 16 C -0.158 4.158 17 C -0.158 4.158 18 C 0.008 3.992 19 H 0.084 0.916 20 N -0.337 5.337 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.253 4.253 24 N -0.588 5.588 25 Si 0.802 3.198 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.203 1.203 29 N -0.171 5.171 30 H 0.271 0.729 31 C 0.000 4.000 32 C -0.165 4.165 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.247 0.753 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.082 14.874 4.889 27.891 hybrid contribution 1.354 -1.095 -0.330 1.773 sum -21.728 13.779 4.559 26.129 Atomic orbital electron populations 1.20859 0.88791 1.03903 1.03312 1.20038 0.97396 0.91904 0.96477 1.20871 0.93572 0.98659 1.03778 1.20659 0.94427 0.96309 0.97302 1.18414 0.92616 0.94264 1.10002 1.21046 0.96185 0.93444 1.03968 1.19845 0.83960 0.93318 1.12901 1.17466 0.87261 0.82228 0.76205 1.90837 1.32444 1.69323 1.51859 1.45843 1.09751 1.05154 1.73589 1.22176 0.84413 0.91977 0.97297 0.91971 1.23149 1.01785 0.93028 0.98672 1.23335 0.85761 0.96474 0.90411 0.87548 1.23335 0.98649 0.94866 0.98913 1.23307 0.97747 0.96588 0.98199 1.23293 0.91957 0.89249 0.94651 0.91649 1.46677 1.08046 1.07376 1.71601 1.19229 0.85462 0.92068 1.38971 0.91359 1.25448 1.01546 0.95199 1.03143 1.69845 1.33015 0.98467 1.57426 0.85173 0.80281 0.76760 0.77572 1.21392 1.21813 1.20255 1.41792 1.02985 1.08731 1.63638 0.72935 1.18553 0.91504 0.87431 1.02543 1.20191 0.88952 0.99769 1.07543 0.90045 0.90224 0.90689 0.83579 0.84444 0.83243 0.75320 0.92490 0.88228 0.94691 0.89557 0.89692 0.94467 0.94124 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 71.24 0.71 -0.08 16 2 C -0.06 -0.74 5.88 -19.83 -0.12 -0.86 16 3 C -0.15 -2.07 9.61 22.02 0.21 -1.86 16 4 C -0.07 -1.19 10.06 22.30 0.22 -0.97 16 5 C -0.15 -3.27 6.16 -21.36 -0.13 -3.41 16 6 C -0.12 -3.01 10.53 22.55 0.24 -2.77 16 7 C 0.01 0.24 6.97 39.91 0.28 0.51 16 8 C 0.58 17.58 7.79 86.56 0.67 18.25 16 9 O -0.57 -22.21 16.57 -4.18 -0.07 -22.28 16 10 N -0.69 -18.42 3.59 -438.50 -1.58 -20.00 16 11 C 0.15 5.23 3.08 46.61 0.14 5.38 16 12 H 0.06 2.54 7.70 -2.39 -0.02 2.52 16 13 C -0.13 -4.34 6.22 32.22 0.20 -4.14 16 14 C 0.15 6.37 4.57 46.23 0.21 6.58 16 15 H 0.11 5.45 5.91 -2.39 -0.01 5.43 16 16 C -0.12 -4.34 6.58 33.25 0.22 -4.12 16 17 C -0.12 -4.23 6.48 33.25 0.22 -4.01 16 18 C 0.12 4.89 5.30 46.22 0.25 5.14 16 19 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 20 N -0.61 -30.97 2.98 -615.28 -1.83 -32.80 16 21 C -0.23 -12.94 10.55 84.04 0.89 -12.06 16 22 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 23 C -0.06 -3.37 5.46 84.86 0.46 -2.90 16 24 N -0.94 -54.37 10.76 21.65 0.23 -54.13 16 25 Si 0.97 46.18 29.56 68.60 2.03 48.20 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 29 N -0.57 -10.38 6.07 -177.19 -1.08 -11.46 16 30 H 0.43 5.15 8.12 -92.71 -0.75 4.39 16 31 C 0.11 2.15 7.25 39.13 0.28 2.43 16 32 C -0.14 -2.15 9.71 22.37 0.22 -1.94 16 33 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 35 H 0.07 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.41 7.75 7.08 -92.70 -0.66 7.09 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.10 2.51 7.37 -2.39 -0.02 2.50 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 2.36 7.85 -2.39 -0.02 2.34 16 44 H 0.08 2.40 6.47 -2.38 -0.02 2.39 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -72.49 378.82 2.49 -70.00 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.40 Total: 23.28 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.18 Total: -0.82 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.25 Total: -118.38 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.07 Total: -22.28 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.49 2.49 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095831186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.730 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds