Wall clock time and date at job start Tue Mar 31 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38938 * 119.69535 * 2 1 4 4 C 1.37669 * 120.64923 * 179.97438 * 3 2 1 5 5 C 1.39223 * 119.80834 * 0.02562 * 4 3 2 6 6 N 1.37491 * 133.17789 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.60086 * 0.02562 * 6 5 4 8 8 C 1.38146 * 108.78583 * 179.97438 * 6 5 4 9 9 C 1.47056 * 125.42848 * 179.97438 * 8 6 5 10 10 O 1.21647 * 120.00271 * 180.02562 * 9 8 6 11 11 N 1.34780 * 120.00126 * 0.29897 * 9 8 6 12 12 C 1.46497 * 120.00188 * 179.72166 * 11 9 8 13 13 H 1.09001 * 110.55767 * 37.01134 * 12 11 9 14 14 C 1.54863 * 110.62431 * 160.07502 * 12 11 9 15 15 C 1.55847 * 103.44082 * 118.49197 * 14 12 11 16 16 H 1.08999 * 115.55557 * 158.81472 * 15 14 12 17 17 C 1.55837 * 105.74331 * 287.98709 * 15 14 12 18 18 C 1.57716 * 103.12184 * 70.91372 * 17 15 14 19 19 C 1.55839 * 102.67889 * 1.20096 * 18 17 15 20 20 H 1.09001 * 115.55720 * 158.49757 * 19 18 17 21 21 N 1.50239 * 101.75603 * 32.10204 * 19 18 17 22 22 C 1.36928 * 130.84121 * 125.85575 * 21 19 18 23 23 H 1.08000 * 120.00141 * 10.19061 * 22 21 19 24 24 C 1.38814 * 120.00248 * 190.18500 * 22 21 19 25 25 N 1.31619 * 120.00083 * 9.09102 * 24 22 21 26 26 Si 1.86802 * 120.00240 * 189.09310 * 24 22 21 27 27 H 1.48504 * 109.46882 * 84.98502 * 26 24 22 28 28 H 1.48491 * 109.47083 * 204.99028 * 26 24 22 29 29 H 1.48504 * 109.46932 * 324.98949 * 26 24 22 30 30 C 1.35865 * 109.13916 * 0.23219 * 8 6 5 31 31 C 1.40844 * 119.43138 * 359.97438 * 5 4 3 32 32 C 1.36435 * 119.69030 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47149 * 89.99782 * 1 2 3 34 34 H 1.08994 * 109.47599 * 210.00191 * 1 2 3 35 35 H 1.09002 * 109.46804 * 330.00053 * 1 2 3 36 36 H 1.08000 * 119.67291 * 0.02656 * 3 2 1 37 37 H 1.08001 * 120.09464 * 180.02562 * 4 3 2 38 38 H 0.97006 * 119.99425 * 359.72994 * 11 9 8 39 39 H 1.08994 * 110.62747 * 236.98232 * 14 12 11 40 40 H 1.08998 * 110.62824 * 0.02562 * 14 12 11 41 41 H 1.09000 * 110.63178 * 190.50076 * 17 15 14 42 42 H 1.08999 * 110.63144 * 313.52896 * 17 15 14 43 43 H 1.09004 * 111.90664 * 242.53672 * 18 17 15 44 44 H 1.09000 * 110.06965 * 119.02248 * 18 17 15 45 45 H 0.96993 * 120.00014 * 179.97438 * 25 24 22 46 46 H 1.08003 * 126.13427 * 179.75226 * 30 8 6 47 47 H 1.08007 * 120.08354 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2069 0.0000 4 6 3.5718 1.2298 0.0005 5 6 4.2839 0.0335 0.0005 6 7 5.6266 -0.2621 0.0014 7 1 6.3477 0.3867 0.0026 8 6 5.7799 -1.6350 0.0015 9 6 7.0654 -2.3493 0.0018 10 8 7.0854 -3.5656 0.0014 11 7 8.2214 -1.6563 0.0081 12 6 9.5019 -2.3679 0.0146 13 1 9.4439 -3.2659 -0.6004 14 6 10.6431 -1.4415 -0.4730 15 6 11.5988 -1.3665 0.7558 16 1 12.6253 -1.0733 0.5359 17 6 10.8610 -0.4902 1.8124 18 6 9.6851 -1.4243 2.2941 19 6 9.9236 -2.7263 1.4714 20 1 9.4746 -3.6307 1.8819 21 7 11.4205 -2.7376 1.3435 22 6 12.3393 -3.7011 1.6637 23 1 12.0097 -4.6952 1.9274 24 6 13.6943 -3.4002 1.6492 25 7 14.0900 -2.1532 1.5047 26 14 14.9563 -4.7649 1.8346 27 1 15.2228 -5.3762 0.5077 28 1 16.2165 -4.2026 2.3828 29 1 14.4324 -5.8009 2.7607 30 6 4.5537 -2.2202 -0.0045 31 6 3.5838 -1.1886 0.0005 32 6 2.1828 -1.1852 -0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3633 0.8900 0.5138 36 1 1.6450 2.1362 0.0004 37 1 4.0977 2.1731 0.0009 38 1 8.2054 -0.6864 0.0085 39 1 11.1537 -1.8800 -1.3304 40 1 10.2564 -0.4527 -0.7192 41 1 11.5314 -0.2307 2.6317 42 1 10.4534 0.4083 1.3490 43 1 8.7079 -0.9990 2.0651 44 1 9.7781 -1.6223 3.3619 45 1 15.0368 -1.9429 1.4950 46 1 4.3546 -3.2817 -0.0097 47 1 1.6391 -2.1185 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095850152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:04 Heat of formation + Delta-G solvation = 67.639218 kcal Electronic energy + Delta-G solvation = -28853.950365 eV Core-core repulsion = 25003.115651 eV Total energy + Delta-G solvation = -3850.834715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.75151 -39.93564 -38.38736 -37.31996 -34.13813 -32.49566 -32.39038 -31.58301 -29.49766 -29.12206 -29.00700 -27.80125 -26.53637 -24.47036 -23.66584 -22.01501 -21.55731 -20.93948 -20.16596 -19.57705 -18.84969 -18.35314 -17.32991 -16.92259 -15.68593 -15.48441 -15.30419 -15.00510 -14.91756 -14.59649 -14.15317 -14.14342 -13.94345 -13.84251 -13.66322 -13.46497 -13.04966 -12.43525 -12.40120 -12.36938 -11.87869 -11.80379 -11.56559 -11.36111 -11.12713 -11.11141 -10.96133 -10.93803 -10.85223 -10.27052 -10.12372 -10.08853 -10.08351 -9.88351 -9.54995 -9.34628 -8.91167 -8.67090 -8.31041 -7.95118 -6.93780 -5.80193 -3.15273 0.60754 1.36014 2.01309 2.71780 3.20808 3.37019 3.38662 3.43680 3.44797 3.64343 4.40638 4.43084 4.64076 4.69291 4.83772 4.98135 5.12129 5.13016 5.17975 5.30877 5.36759 5.38925 5.44055 5.50783 5.64466 5.72357 5.77601 5.80482 5.81565 5.85006 5.99314 6.05395 6.14900 6.17250 6.24077 6.32203 6.44632 6.46134 6.49426 6.49898 6.54308 6.72452 6.83976 6.90439 6.93032 7.16144 7.20586 7.47835 7.59415 7.71517 8.06492 8.25616 9.03884 9.67829 10.49854 11.32400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031954 B = 0.002244 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.047034 B =12473.303456 C =12939.343090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.578 5.578 7 H 0.417 0.583 8 C 0.027 3.973 9 C 0.576 3.424 10 O -0.521 6.521 11 N -0.707 5.707 12 C 0.129 3.871 13 H 0.086 0.914 14 C -0.143 4.143 15 C 0.160 3.840 16 H 0.141 0.859 17 C -0.129 4.129 18 C -0.134 4.134 19 C 0.128 3.872 20 H 0.087 0.913 21 N -0.587 5.587 22 C -0.214 4.214 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.915 3.085 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.115 4.115 31 C -0.113 4.113 32 C -0.062 4.062 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.390 0.610 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.155 0.845 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.747 9.739 -4.423 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.003 4.003 6 N -0.183 5.183 7 H 0.255 0.745 8 C -0.082 4.082 9 C 0.361 3.639 10 O -0.397 6.397 11 N -0.358 5.358 12 C 0.023 3.977 13 H 0.104 0.896 14 C -0.183 4.183 15 C 0.053 3.947 16 H 0.158 0.842 17 C -0.168 4.168 18 C -0.173 4.173 19 C 0.019 3.981 20 H 0.105 0.895 21 N -0.307 5.307 22 C -0.342 4.342 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.566 5.566 26 Si 0.745 3.255 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.141 4.141 31 C -0.118 4.118 32 C -0.081 4.081 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.224 0.776 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.173 0.827 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.193 8.752 -4.360 24.251 hybrid contribution 1.038 0.265 0.166 1.084 sum -21.155 9.017 -4.195 23.376 Atomic orbital electron populations 1.20720 0.91162 1.02566 1.02064 1.19362 0.96041 0.92814 1.03833 1.20734 0.92840 0.97600 0.99726 1.20049 0.93833 0.94864 1.06124 1.18321 0.82995 0.95556 1.03446 1.41967 1.06109 1.06143 1.64032 0.74467 1.20378 0.95566 0.82041 1.10251 1.17206 0.82137 0.87048 0.77485 1.90857 1.86592 1.12364 1.49844 1.46171 1.06248 1.09465 1.73875 1.22729 0.79872 0.95194 0.99890 0.89552 1.23314 0.96947 0.97046 1.00996 1.23377 0.98435 0.84878 0.88032 0.84198 1.23452 0.96697 0.96206 1.00448 1.23403 0.96574 0.97776 0.99585 1.23164 0.86770 0.95766 0.92419 0.89536 1.46433 0.98958 1.14436 1.70904 1.19022 0.85838 0.89948 1.39406 0.90358 1.24764 0.96853 0.96463 1.02508 1.69661 1.14505 1.16025 1.56397 0.86086 0.80801 0.80826 0.77773 1.21534 1.21731 1.20702 1.20900 0.89253 0.99374 1.04617 1.18187 0.93570 0.92305 1.07747 1.20255 0.91473 0.97864 0.98524 0.91534 0.91715 0.91794 0.85689 0.85978 0.77622 0.91427 0.92667 0.91982 0.94136 0.93222 0.92975 0.93591 0.82696 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.99 36.01 0.36 -0.28 16 2 C -0.12 -1.02 5.84 -105.01 -0.61 -1.63 16 3 C -0.09 -0.73 9.66 -39.53 -0.38 -1.11 16 4 C -0.13 -1.13 10.08 -39.42 -0.40 -1.53 16 5 C 0.11 1.15 7.25 -83.98 -0.61 0.55 16 6 N -0.58 -5.95 6.07 -7.36 -0.04 -5.99 16 7 H 0.42 3.17 8.12 -40.82 -0.33 2.84 16 8 C 0.03 0.35 6.97 -82.29 -0.57 -0.22 16 9 C 0.58 8.87 7.79 -12.68 -0.10 8.77 16 10 O -0.52 -9.97 16.57 5.24 0.09 -9.88 16 11 N -0.71 -10.05 3.59 -52.58 -0.19 -10.24 16 12 C 0.13 2.30 3.08 -65.43 -0.20 2.10 16 13 H 0.09 1.72 7.70 -51.93 -0.40 1.32 16 14 C -0.14 -2.55 6.22 -24.23 -0.15 -2.70 16 15 C 0.16 3.48 4.57 -62.80 -0.29 3.19 16 16 H 0.14 3.50 5.91 -51.93 -0.31 3.19 16 17 C -0.13 -2.45 6.58 -22.64 -0.15 -2.60 16 18 C -0.13 -2.46 6.48 -22.64 -0.15 -2.60 16 19 C 0.13 2.64 5.30 -62.81 -0.33 2.31 16 20 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 21 N -0.59 -14.37 2.98 -145.83 -0.43 -14.80 16 22 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 23 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 24 C -0.01 -0.27 5.46 -17.43 -0.10 -0.36 16 25 N -0.92 -25.82 10.76 55.49 0.60 -25.23 16 26 Si 0.91 21.86 29.56 -169.99 -5.03 16.83 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 C -0.11 -1.47 10.53 -39.15 -0.41 -1.88 16 31 C -0.11 -1.32 6.16 -106.93 -0.66 -1.98 16 32 C -0.06 -0.61 9.68 -39.53 -0.38 -1.00 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.39 4.40 7.08 -40.82 -0.29 4.12 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.81 7.37 -51.93 -0.38 0.43 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 43 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 47 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -31.57 378.81 -11.23 -42.81 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.64 Total: 7.78 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -5.29 Total: -6.99 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.07 Total: -56.26 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.57 -11.23 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095850152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.448 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds