Wall clock time and date at job start Tue Mar 31 2020 22:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38938 * 119.69535 * 2 1 4 4 C 1.37669 * 120.64923 * 179.97438 * 3 2 1 5 5 C 1.39223 * 119.80834 * 0.02562 * 4 3 2 6 6 N 1.37491 * 133.17789 * 180.02562 * 5 4 3 7 7 H 0.97000 * 125.60086 * 0.02562 * 6 5 4 8 8 C 1.38146 * 108.78583 * 179.97438 * 6 5 4 9 9 C 1.47056 * 125.42848 * 179.97438 * 8 6 5 10 10 O 1.21647 * 120.00271 * 180.02562 * 9 8 6 11 11 N 1.34780 * 120.00126 * 0.29897 * 9 8 6 12 12 C 1.46497 * 120.00188 * 179.72166 * 11 9 8 13 13 H 1.09001 * 110.55767 * 37.01134 * 12 11 9 14 14 C 1.54863 * 110.62431 * 160.07502 * 12 11 9 15 15 C 1.55847 * 103.44082 * 118.49197 * 14 12 11 16 16 H 1.08999 * 115.55557 * 158.81472 * 15 14 12 17 17 C 1.55837 * 105.74331 * 287.98709 * 15 14 12 18 18 C 1.57716 * 103.12184 * 70.91372 * 17 15 14 19 19 C 1.55839 * 102.67889 * 1.20096 * 18 17 15 20 20 H 1.09001 * 115.55720 * 158.49757 * 19 18 17 21 21 N 1.50239 * 101.75603 * 32.10204 * 19 18 17 22 22 C 1.36928 * 130.84121 * 125.85575 * 21 19 18 23 23 H 1.08000 * 120.00141 * 10.19061 * 22 21 19 24 24 C 1.38814 * 120.00248 * 190.18500 * 22 21 19 25 25 N 1.31619 * 120.00083 * 9.09102 * 24 22 21 26 26 Si 1.86802 * 120.00240 * 189.09310 * 24 22 21 27 27 H 1.48504 * 109.46882 * 84.98502 * 26 24 22 28 28 H 1.48491 * 109.47083 * 204.99028 * 26 24 22 29 29 H 1.48504 * 109.46932 * 324.98949 * 26 24 22 30 30 C 1.35865 * 109.13916 * 0.23219 * 8 6 5 31 31 C 1.40844 * 119.43138 * 359.97438 * 5 4 3 32 32 C 1.36435 * 119.69030 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47149 * 89.99782 * 1 2 3 34 34 H 1.08994 * 109.47599 * 210.00191 * 1 2 3 35 35 H 1.09002 * 109.46804 * 330.00053 * 1 2 3 36 36 H 1.08000 * 119.67291 * 0.02656 * 3 2 1 37 37 H 1.08001 * 120.09464 * 180.02562 * 4 3 2 38 38 H 0.97006 * 119.99425 * 359.72994 * 11 9 8 39 39 H 1.08994 * 110.62747 * 236.98232 * 14 12 11 40 40 H 1.08998 * 110.62824 * 0.02562 * 14 12 11 41 41 H 1.09000 * 110.63178 * 190.50076 * 17 15 14 42 42 H 1.08999 * 110.63144 * 313.52896 * 17 15 14 43 43 H 1.09004 * 111.90664 * 242.53672 * 18 17 15 44 44 H 1.09000 * 110.06965 * 119.02248 * 18 17 15 45 45 H 0.96993 * 120.00014 * 179.97438 * 25 24 22 46 46 H 1.08003 * 126.13427 * 179.75226 * 30 8 6 47 47 H 1.08007 * 120.08354 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2069 0.0000 4 6 3.5718 1.2298 0.0005 5 6 4.2839 0.0335 0.0005 6 7 5.6266 -0.2621 0.0014 7 1 6.3477 0.3867 0.0026 8 6 5.7799 -1.6350 0.0015 9 6 7.0654 -2.3493 0.0018 10 8 7.0854 -3.5656 0.0014 11 7 8.2214 -1.6563 0.0081 12 6 9.5019 -2.3679 0.0146 13 1 9.4439 -3.2659 -0.6004 14 6 10.6431 -1.4415 -0.4730 15 6 11.5988 -1.3665 0.7558 16 1 12.6253 -1.0733 0.5359 17 6 10.8610 -0.4902 1.8124 18 6 9.6851 -1.4243 2.2941 19 6 9.9236 -2.7263 1.4714 20 1 9.4746 -3.6307 1.8819 21 7 11.4205 -2.7376 1.3435 22 6 12.3393 -3.7011 1.6637 23 1 12.0097 -4.6952 1.9274 24 6 13.6943 -3.4002 1.6492 25 7 14.0900 -2.1532 1.5047 26 14 14.9563 -4.7649 1.8346 27 1 15.2228 -5.3762 0.5077 28 1 16.2165 -4.2026 2.3828 29 1 14.4324 -5.8009 2.7607 30 6 4.5537 -2.2202 -0.0045 31 6 3.5838 -1.1886 0.0005 32 6 2.1828 -1.1852 -0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3633 0.8900 0.5138 36 1 1.6450 2.1362 0.0004 37 1 4.0977 2.1731 0.0009 38 1 8.2054 -0.6864 0.0085 39 1 11.1537 -1.8800 -1.3304 40 1 10.2564 -0.4527 -0.7192 41 1 11.5314 -0.2307 2.6317 42 1 10.4534 0.4083 1.3490 43 1 8.7079 -0.9990 2.0651 44 1 9.7781 -1.6223 3.3619 45 1 15.0368 -1.9429 1.4950 46 1 4.3546 -3.2817 -0.0097 47 1 1.6391 -2.1185 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095850152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:03 Heat of formation + Delta-G solvation = 49.874711 kcal Electronic energy + Delta-G solvation = -28854.720692 eV Core-core repulsion = 25003.115651 eV Total energy + Delta-G solvation = -3851.605042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.61400 -41.33703 -39.73333 -38.12170 -35.62287 -34.25749 -33.23125 -32.33609 -30.96354 -30.82629 -30.11207 -29.20934 -27.30621 -26.18051 -24.79147 -22.98791 -22.78872 -21.95524 -21.40894 -21.01430 -20.27110 -19.52403 -18.79004 -18.13859 -16.98391 -16.88014 -16.63911 -16.17428 -15.97608 -15.84861 -15.69185 -15.09706 -15.04167 -14.76071 -14.64703 -14.18491 -14.10083 -13.97566 -13.80833 -13.47639 -13.25645 -12.88465 -12.87422 -12.82240 -12.66986 -12.49088 -12.39500 -12.01938 -11.99668 -11.96513 -11.77265 -11.64824 -11.41245 -11.24585 -10.95586 -10.88060 -10.82096 -10.15000 -9.09685 -8.86599 -8.71733 -7.86561 -5.22126 -0.23546 0.65578 1.09307 1.44986 1.46519 1.53934 1.83318 2.05088 2.26673 2.48231 2.92365 3.29077 3.45079 3.63820 3.76380 3.88308 4.04151 4.10049 4.11402 4.13036 4.27362 4.33777 4.39951 4.45291 4.51491 4.56743 4.65606 4.72081 4.73712 4.85538 4.92928 4.96182 4.98714 4.99654 5.08766 5.10336 5.15850 5.26321 5.28934 5.40455 5.46714 5.50348 5.56709 5.66863 5.68554 5.80595 5.82648 6.14421 6.18162 6.38614 6.53987 6.99842 7.06867 7.64879 8.53020 9.23793 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031954 B = 0.002244 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.047034 B =12473.303456 C =12939.343090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.132 4.132 5 C 0.100 3.900 6 N -0.564 5.564 7 H 0.431 0.569 8 C 0.013 3.987 9 C 0.581 3.419 10 O -0.566 6.566 11 N -0.692 5.692 12 C 0.148 3.852 13 H 0.062 0.938 14 C -0.127 4.127 15 C 0.146 3.854 16 H 0.107 0.893 17 C -0.118 4.118 18 C -0.119 4.119 19 C 0.117 3.883 20 H 0.065 0.935 21 N -0.615 5.615 22 C -0.228 4.228 23 H 0.068 0.932 24 C -0.060 4.060 25 N -0.939 5.939 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.277 1.277 30 C -0.123 4.123 31 C -0.138 4.138 32 C -0.079 4.079 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.249 0.751 46 H 0.149 0.851 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.358 12.575 -4.965 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.153 4.153 5 C -0.010 4.010 6 N -0.170 5.170 7 H 0.271 0.729 8 C -0.097 4.097 9 C 0.368 3.632 10 O -0.444 6.444 11 N -0.343 5.343 12 C 0.041 3.959 13 H 0.080 0.920 14 C -0.166 4.166 15 C 0.040 3.960 16 H 0.125 0.875 17 C -0.157 4.157 18 C -0.159 4.159 19 C 0.009 3.991 20 H 0.083 0.917 21 N -0.337 5.337 22 C -0.357 4.357 23 H 0.086 0.914 24 C -0.254 4.254 25 N -0.587 5.587 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.151 4.151 31 C -0.143 4.143 32 C -0.098 4.098 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.247 0.753 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.166 0.834 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.834 11.650 -4.909 27.866 hybrid contribution 1.652 -0.590 0.335 1.786 sum -23.182 11.060 -4.575 26.089 Atomic orbital electron populations 1.20776 0.89289 1.03513 1.02884 1.19745 0.97518 0.92539 1.02317 1.21178 0.92871 0.98605 0.97876 1.20403 0.94244 0.95100 1.05503 1.18605 0.82976 0.96036 1.03383 1.41795 1.06586 1.05134 1.63527 0.72863 1.19851 0.94005 0.83294 1.12517 1.17468 0.82940 0.86558 0.76225 1.90839 1.87278 1.14498 1.51819 1.45841 1.04648 1.10256 1.73556 1.22178 0.81490 0.94907 0.97302 0.91974 1.23149 0.95624 0.99182 0.98669 1.23343 0.98109 0.84149 0.90428 0.87524 1.23334 0.96048 0.97455 0.98907 1.23311 0.98059 0.96294 0.98200 1.23290 0.84922 0.96269 0.94647 0.91670 1.46682 1.00228 1.15140 1.71685 1.19226 0.86981 0.90522 1.38988 0.91369 1.25450 0.98302 0.98457 1.03149 1.69845 1.14248 1.17211 1.57429 0.85172 0.78476 0.78567 0.77567 1.21397 1.21806 1.20261 1.21030 0.89990 0.99640 1.04428 1.18378 0.94407 0.92392 1.09095 1.20481 0.91007 0.99093 0.99178 0.90675 0.91377 0.90332 0.82781 0.83406 0.75288 0.92491 0.88194 0.94698 0.89529 0.89665 0.94471 0.94126 0.83360 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.99 71.24 0.71 -0.23 16 2 C -0.12 -1.71 5.84 -20.12 -0.12 -1.82 16 3 C -0.09 -1.06 9.66 22.30 0.22 -0.85 16 4 C -0.13 -1.85 10.08 22.37 0.23 -1.62 16 5 C 0.10 1.92 7.25 39.13 0.28 2.20 16 6 N -0.56 -10.18 6.07 -177.19 -1.08 -11.26 16 7 H 0.43 4.96 8.12 -92.71 -0.75 4.20 16 8 C 0.01 0.33 6.97 39.91 0.28 0.61 16 9 C 0.58 17.52 7.79 86.56 0.67 18.20 16 10 O -0.57 -22.19 16.57 -4.18 -0.07 -22.26 16 11 N -0.69 -18.31 3.59 -438.50 -1.58 -19.89 16 12 C 0.15 5.21 3.08 46.61 0.14 5.36 16 13 H 0.06 2.53 7.70 -2.39 -0.02 2.51 16 14 C -0.13 -4.33 6.22 32.22 0.20 -4.13 16 15 C 0.15 6.34 4.57 46.23 0.21 6.55 16 16 H 0.11 5.45 5.91 -2.39 -0.01 5.43 16 17 C -0.12 -4.32 6.58 33.25 0.22 -4.10 16 18 C -0.12 -4.22 6.48 33.25 0.22 -4.01 16 19 C 0.12 4.89 5.30 46.22 0.25 5.14 16 20 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 21 N -0.62 -30.97 2.98 -615.28 -1.83 -32.80 16 22 C -0.23 -12.93 10.55 84.04 0.89 -12.04 16 23 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 24 C -0.06 -3.38 5.46 84.86 0.46 -2.92 16 25 N -0.94 -54.32 10.76 21.65 0.23 -54.09 16 26 Si 0.97 46.17 29.56 68.60 2.03 48.19 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 C -0.12 -3.14 10.53 22.55 0.24 -2.90 16 31 C -0.14 -3.07 6.16 -21.36 -0.13 -3.20 16 32 C -0.08 -1.43 9.68 22.30 0.22 -1.21 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.56 8.07 -2.39 -0.02 0.54 16 35 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 36 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.41 7.66 7.08 -92.70 -0.66 7.01 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 2.51 7.37 -2.39 -0.02 2.49 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 2.36 7.85 -2.39 -0.02 2.34 16 43 H 0.09 2.40 6.47 -2.38 -0.02 2.38 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 47 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -72.64 378.81 2.49 -70.15 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.40 Total: 22.91 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 5.18 Total: -0.97 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -4.25 Total: -118.03 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.26 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.64 2.49 -70.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095850152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.026 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds