Wall clock time and date at job start Tue Mar 31 2020 22:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39916 * 125.99595 * 2 1 4 4 C 1.38332 * 107.12075 * 179.97438 * 3 2 1 5 5 C 1.41352 * 131.72999 * 180.02562 * 4 3 2 6 6 C 1.35515 * 119.55510 * 180.02562 * 5 4 3 7 7 C 1.46454 * 118.95497 * 359.97438 * 6 5 4 8 8 C 1.47500 * 120.19890 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00143 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99710 * 359.97438 * 8 7 6 11 11 C 1.46497 * 120.00145 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.68308 * 32.01113 * 11 10 8 13 13 C 1.55476 * 110.76000 * 268.95946 * 11 10 8 14 14 C 1.55846 * 103.32799 * 241.51487 * 13 11 10 15 15 H 1.09004 * 116.13003 * 159.23349 * 14 13 11 16 16 C 1.56865 * 105.77333 * 288.56113 * 14 13 11 17 17 C 1.54847 * 103.35377 * 71.45641 * 16 14 13 18 18 C 1.55841 * 110.62970 * 154.99914 * 11 10 8 19 19 H 1.09008 * 115.55988 * 319.68133 * 18 11 10 20 20 N 1.50236 * 101.05204 * 85.55266 * 18 11 10 21 21 C 1.36939 * 130.84325 * 233.93710 * 20 18 11 22 22 H 1.08005 * 119.99349 * 10.13685 * 21 20 18 23 23 C 1.38804 * 120.00247 * 190.14544 * 21 20 18 24 24 N 1.31621 * 119.99998 * 9.07525 * 23 21 20 25 25 Si 1.86800 * 120.00024 * 189.07868 * 23 21 20 26 26 H 1.48501 * 109.47290 * 84.98723 * 25 23 21 27 27 H 1.48503 * 109.47352 * 204.98676 * 25 23 21 28 28 H 1.48498 * 109.47058 * 324.98384 * 25 23 21 29 29 C 1.36308 * 119.60484 * 0.25467 * 7 6 5 30 30 N 1.36526 * 120.64808 * 359.49042 * 29 7 6 31 31 C 1.35275 * 125.99610 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47192 * 90.01802 * 1 2 3 33 33 H 1.09000 * 109.46801 * 210.02131 * 1 2 3 34 34 H 1.09004 * 109.46471 * 330.01616 * 1 2 3 35 35 H 1.07996 * 126.44274 * 359.97438 * 3 2 1 36 36 H 1.08007 * 120.22482 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.52366 * 180.02562 * 6 5 4 38 38 H 0.97003 * 120.00014 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.61313 * 123.09594 * 13 11 10 40 40 H 1.09002 * 110.75398 * 359.97438 * 13 11 10 41 41 H 1.08999 * 110.43164 * 313.10349 * 16 14 13 42 42 H 1.09003 * 111.03773 * 190.09392 * 16 14 13 43 43 H 1.08999 * 110.62868 * 241.78217 * 17 16 14 44 44 H 1.09006 * 110.76370 * 118.82916 * 17 16 14 45 45 H 0.97005 * 119.99883 * 180.02562 * 24 23 21 46 46 H 1.08000 * 119.67306 * 179.74319 * 29 7 6 47 47 H 1.07991 * 125.53388 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6845 0.0006 5 6 4.8699 1.3783 0.0013 6 6 6.0309 0.6793 0.0013 7 6 5.9773 -0.7843 0.0010 8 6 7.2242 -1.5723 0.0004 9 8 7.1755 -2.7873 -0.0003 10 7 8.4174 -0.9456 -0.0005 11 6 9.6558 -1.7282 -0.0017 12 1 9.5189 -2.6647 -0.5423 13 6 10.1370 -2.0006 1.4514 14 6 11.5291 -1.3021 1.5058 15 1 11.9038 -1.0549 2.4991 16 6 12.4839 -2.1853 0.6289 17 6 11.9965 -1.9135 -0.8155 18 6 10.8256 -0.9040 -0.6189 19 1 10.5691 -0.3052 -1.4929 20 7 11.3038 -0.1387 0.5822 21 6 11.4844 1.2051 0.7743 22 1 11.1180 1.9093 0.0419 23 6 12.1385 1.6621 1.9101 24 7 12.7406 0.8087 2.7111 25 14 12.1642 3.4884 2.3018 26 1 10.9283 3.8539 3.0395 27 1 13.3506 3.7984 3.1395 28 1 12.2343 4.2648 1.0379 29 6 4.7684 -1.4139 -0.0044 30 7 3.6086 -0.6936 0.0008 31 6 2.3021 -1.0945 0.0005 32 1 -0.3633 -0.0003 -1.0276 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3632 0.8902 0.5136 35 1 2.0036 2.1616 -0.0004 36 1 4.8855 2.4582 0.0011 37 1 6.9806 1.1934 0.0022 38 1 8.4562 0.0237 -0.0003 39 1 10.2375 -3.0715 1.6280 40 1 9.4549 -1.5532 2.1744 41 1 12.3666 -3.2391 0.8819 42 1 13.5223 -1.8763 0.7484 43 1 11.6375 -2.8324 -1.2790 44 1 12.7911 -1.4680 -1.4141 45 1 13.1974 1.1281 3.5050 46 1 4.7276 -2.4931 -0.0088 47 1 1.9600 -2.1187 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097192016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:46 Heat of formation + Delta-G solvation = 81.709887 kcal Electronic energy + Delta-G solvation = -29015.448126 eV Core-core repulsion = 25165.223561 eV Total energy + Delta-G solvation = -3850.224565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26349 -39.87774 -38.50968 -36.33151 -34.06818 -33.26238 -32.53653 -31.60718 -29.14667 -29.00978 -28.28435 -27.81381 -26.92982 -24.26989 -23.47596 -22.61973 -21.58049 -20.47066 -19.93205 -19.57970 -18.70475 -17.90934 -17.04121 -16.84322 -16.31194 -15.82954 -15.61490 -14.94677 -14.73052 -14.52913 -14.43394 -14.08502 -13.92036 -13.52034 -13.31834 -13.29831 -13.15068 -12.84449 -12.31856 -12.11707 -11.88823 -11.79349 -11.59653 -11.35366 -11.17903 -11.00883 -10.97195 -10.91487 -10.55939 -10.51338 -10.36048 -10.12104 -10.01540 -9.90814 -9.42937 -9.21822 -8.86818 -8.66647 -8.43207 -7.52916 -6.96588 -5.82362 -3.18640 0.61923 1.05018 2.46860 2.54755 2.98336 3.33179 3.38132 3.40671 3.52412 3.65250 4.35358 4.37287 4.57976 4.66926 4.80792 4.85526 5.05228 5.07269 5.09918 5.29882 5.36096 5.45102 5.49779 5.59412 5.61458 5.65826 5.73079 5.84011 5.85633 5.93186 6.01560 6.05204 6.11153 6.15055 6.23806 6.27635 6.38355 6.42925 6.57156 6.69753 6.71403 6.77876 6.78726 6.91852 7.04876 7.11001 7.27576 7.44017 7.72418 7.86066 8.07238 8.44827 8.99785 9.64867 10.48240 11.29499 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002928 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.025649 B = 9561.610379 C =11094.033772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.117 4.117 3 C -0.203 4.203 4 C 0.050 3.950 5 C -0.094 4.094 6 C -0.099 4.099 7 C -0.162 4.162 8 C 0.566 3.434 9 O -0.553 6.553 10 N -0.694 5.694 11 C 0.130 3.870 12 H 0.083 0.917 13 C -0.144 4.144 14 C 0.159 3.841 15 H 0.140 0.860 16 C -0.133 4.133 17 C -0.127 4.127 18 C 0.124 3.876 19 H 0.087 0.913 20 N -0.590 5.590 21 C -0.220 4.220 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.124 3.876 30 N -0.354 5.354 31 C -0.054 4.054 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.404 0.596 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.174 0.826 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 -2.615 -6.013 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.227 4.227 4 C -0.055 4.055 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.352 3.648 9 O -0.433 6.433 10 N -0.343 5.343 11 C 0.024 3.976 12 H 0.101 0.899 13 C -0.184 4.184 14 C 0.053 3.947 15 H 0.157 0.843 16 C -0.173 4.173 17 C -0.167 4.167 18 C 0.015 3.985 19 H 0.105 0.895 20 N -0.311 5.311 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.560 5.560 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.001 3.999 30 N -0.018 5.018 31 C -0.180 4.180 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.240 0.760 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.191 0.809 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.504 -3.398 -5.842 18.763 hybrid contribution 0.219 1.372 0.241 1.410 sum -17.285 -2.026 -5.601 18.283 Atomic orbital electron populations 1.20207 0.89465 1.02402 1.01908 1.19483 0.95814 0.92157 1.04679 1.20976 0.89550 0.98799 1.13342 1.18966 0.95640 0.81826 1.09027 1.20499 0.89128 1.00329 1.01266 1.22110 0.99067 0.91511 0.99233 1.20401 0.92909 0.93965 1.09494 1.17654 0.83197 0.86983 0.76922 1.90759 1.87470 1.13377 1.51738 1.45874 1.05061 1.10937 1.72415 1.22782 0.82683 0.94257 0.97914 0.89891 1.23547 1.00497 0.99194 0.95206 1.23614 0.89723 0.84144 0.97242 0.84269 1.23166 1.00746 0.98020 0.95355 1.22853 0.98471 0.97817 0.97603 1.23169 0.91931 0.91924 0.91459 0.89489 1.46550 1.75450 1.01565 1.07518 1.18948 1.30611 0.80087 1.05145 0.90524 1.24760 0.99159 0.97708 0.98707 1.69669 1.38207 1.32440 1.15727 0.86146 0.77164 0.84505 0.77966 1.21578 1.21737 1.20769 1.21690 0.83099 0.98171 0.96916 1.41437 1.05397 1.07085 1.47910 1.21692 0.79747 0.99989 1.16568 0.91557 0.91848 0.91547 0.83741 0.83561 0.83974 0.76035 0.92502 0.92236 0.93579 0.92233 0.93114 0.92376 0.93539 0.80908 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.37 36.01 0.37 -0.21 16 2 C -0.12 -1.20 6.10 -105.05 -0.64 -1.84 16 3 C -0.20 -2.25 10.91 -38.92 -0.42 -2.68 16 4 C 0.05 0.62 6.71 -83.94 -0.56 0.06 16 5 C -0.09 -1.08 10.09 -39.37 -0.40 -1.48 16 6 C -0.10 -1.23 9.73 -37.25 -0.36 -1.59 16 7 C -0.16 -2.27 5.98 -103.51 -0.62 -2.89 16 8 C 0.57 9.30 7.77 -12.49 -0.10 9.21 16 9 O -0.55 -10.46 15.93 5.28 0.08 -10.38 16 10 N -0.69 -11.47 5.05 -52.12 -0.26 -11.73 16 11 C 0.13 2.33 2.84 -65.10 -0.18 2.14 16 12 H 0.08 1.49 7.26 -51.93 -0.38 1.12 16 13 C -0.14 -2.82 6.28 -23.90 -0.15 -2.97 16 14 C 0.16 3.53 4.64 -62.23 -0.29 3.24 16 15 H 0.14 3.55 5.88 -51.93 -0.31 3.25 16 16 C -0.13 -2.63 6.50 -23.67 -0.15 -2.78 16 17 C -0.13 -2.29 6.46 -24.24 -0.16 -2.45 16 18 C 0.12 2.34 5.01 -62.80 -0.31 2.02 16 19 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 20 N -0.59 -13.53 2.96 -145.20 -0.43 -13.96 16 21 C -0.22 -5.59 10.55 -15.06 -0.16 -5.75 16 22 H 0.08 1.87 7.85 -52.48 -0.41 1.46 16 23 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 24 N -0.91 -25.27 10.74 55.49 0.60 -24.67 16 25 Si 0.91 20.96 29.56 -169.99 -5.03 15.93 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.12 1.61 10.45 -16.16 -0.17 1.44 16 30 N -0.35 -4.43 2.93 -60.50 -0.18 -4.60 16 31 C -0.05 -0.57 11.49 -16.46 -0.19 -0.76 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.14 1.62 6.58 -52.49 -0.35 1.27 16 38 H 0.40 6.37 6.76 -40.82 -0.28 6.10 16 39 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 40 H 0.06 1.24 8.00 -51.93 -0.42 0.83 16 41 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.17 2.05 7.56 -52.49 -0.40 1.65 16 47 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -30.22 380.66 -10.76 -40.98 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.69 Total: 10.26 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -4.59 Total: -7.55 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.27 Total: -54.97 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.22 -10.76 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097192016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.689 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds