Wall clock time and date at job start Tue Mar 31 2020 22:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39916 * 125.99595 * 2 1 4 4 C 1.38332 * 107.12075 * 179.97438 * 3 2 1 5 5 C 1.41352 * 131.72999 * 180.02562 * 4 3 2 6 6 C 1.35515 * 119.55510 * 180.02562 * 5 4 3 7 7 C 1.46454 * 118.95497 * 359.97438 * 6 5 4 8 8 C 1.47500 * 120.19890 * 179.97438 * 7 6 5 9 9 O 1.21598 * 120.00143 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99710 * 359.97438 * 8 7 6 11 11 C 1.46497 * 120.00145 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.68308 * 32.01113 * 11 10 8 13 13 C 1.55476 * 110.76000 * 268.95946 * 11 10 8 14 14 C 1.55846 * 103.32799 * 241.51487 * 13 11 10 15 15 H 1.09004 * 116.13003 * 159.23349 * 14 13 11 16 16 C 1.56865 * 105.77333 * 288.56113 * 14 13 11 17 17 C 1.54847 * 103.35377 * 71.45641 * 16 14 13 18 18 C 1.55841 * 110.62970 * 154.99914 * 11 10 8 19 19 H 1.09008 * 115.55988 * 319.68133 * 18 11 10 20 20 N 1.50236 * 101.05204 * 85.55266 * 18 11 10 21 21 C 1.36939 * 130.84325 * 233.93710 * 20 18 11 22 22 H 1.08005 * 119.99349 * 10.13685 * 21 20 18 23 23 C 1.38804 * 120.00247 * 190.14544 * 21 20 18 24 24 N 1.31621 * 119.99998 * 9.07525 * 23 21 20 25 25 Si 1.86800 * 120.00024 * 189.07868 * 23 21 20 26 26 H 1.48501 * 109.47290 * 84.98723 * 25 23 21 27 27 H 1.48503 * 109.47352 * 204.98676 * 25 23 21 28 28 H 1.48498 * 109.47058 * 324.98384 * 25 23 21 29 29 C 1.36308 * 119.60484 * 0.25467 * 7 6 5 30 30 N 1.36526 * 120.64808 * 359.49042 * 29 7 6 31 31 C 1.35275 * 125.99610 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47192 * 90.01802 * 1 2 3 33 33 H 1.09000 * 109.46801 * 210.02131 * 1 2 3 34 34 H 1.09004 * 109.46471 * 330.01616 * 1 2 3 35 35 H 1.07996 * 126.44274 * 359.97438 * 3 2 1 36 36 H 1.08007 * 120.22482 * 359.97438 * 5 4 3 37 37 H 1.07996 * 120.52366 * 180.02562 * 6 5 4 38 38 H 0.97003 * 120.00014 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.61313 * 123.09594 * 13 11 10 40 40 H 1.09002 * 110.75398 * 359.97438 * 13 11 10 41 41 H 1.08999 * 110.43164 * 313.10349 * 16 14 13 42 42 H 1.09003 * 111.03773 * 190.09392 * 16 14 13 43 43 H 1.08999 * 110.62868 * 241.78217 * 17 16 14 44 44 H 1.09006 * 110.76370 * 118.82916 * 17 16 14 45 45 H 0.97005 * 119.99883 * 180.02562 * 24 23 21 46 46 H 1.08000 * 119.67306 * 179.74319 * 29 7 6 47 47 H 1.07991 * 125.53388 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3294 1.1320 0.0000 4 6 3.6383 0.6845 0.0006 5 6 4.8699 1.3783 0.0013 6 6 6.0309 0.6793 0.0013 7 6 5.9773 -0.7843 0.0010 8 6 7.2242 -1.5723 0.0004 9 8 7.1755 -2.7873 -0.0003 10 7 8.4174 -0.9456 -0.0005 11 6 9.6558 -1.7282 -0.0017 12 1 9.5189 -2.6647 -0.5423 13 6 10.1370 -2.0006 1.4514 14 6 11.5291 -1.3021 1.5058 15 1 11.9038 -1.0549 2.4991 16 6 12.4839 -2.1853 0.6289 17 6 11.9965 -1.9135 -0.8155 18 6 10.8256 -0.9040 -0.6189 19 1 10.5691 -0.3052 -1.4929 20 7 11.3038 -0.1387 0.5822 21 6 11.4844 1.2051 0.7743 22 1 11.1180 1.9093 0.0419 23 6 12.1385 1.6621 1.9101 24 7 12.7406 0.8087 2.7111 25 14 12.1642 3.4884 2.3018 26 1 10.9283 3.8539 3.0395 27 1 13.3506 3.7984 3.1395 28 1 12.2343 4.2648 1.0379 29 6 4.7684 -1.4139 -0.0044 30 7 3.6086 -0.6936 0.0008 31 6 2.3021 -1.0945 0.0005 32 1 -0.3633 -0.0003 -1.0276 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3632 0.8902 0.5136 35 1 2.0036 2.1616 -0.0004 36 1 4.8855 2.4582 0.0011 37 1 6.9806 1.1934 0.0022 38 1 8.4562 0.0237 -0.0003 39 1 10.2375 -3.0715 1.6280 40 1 9.4549 -1.5532 2.1744 41 1 12.3666 -3.2391 0.8819 42 1 13.5223 -1.8763 0.7484 43 1 11.6375 -2.8324 -1.2790 44 1 12.7911 -1.4680 -1.4141 45 1 13.1974 1.1281 3.5050 46 1 4.7276 -2.4931 -0.0088 47 1 1.9600 -2.1187 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097192016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:45 Heat of formation + Delta-G solvation = 67.073611 kcal Electronic energy + Delta-G solvation = -29016.082802 eV Core-core repulsion = 25165.223561 eV Total energy + Delta-G solvation = -3850.859241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.13654 -41.29843 -39.95321 -37.27814 -35.44042 -34.47265 -34.11716 -32.47458 -30.94491 -30.50171 -29.57355 -28.83643 -27.88072 -26.09770 -24.52665 -23.57640 -22.81863 -21.67267 -21.52951 -20.76448 -20.19274 -18.90771 -18.81116 -17.96570 -17.35818 -17.06925 -16.76764 -16.55518 -15.99865 -15.91195 -15.49129 -15.43743 -15.22556 -14.91940 -14.48578 -14.07543 -13.90223 -13.81593 -13.76322 -13.65101 -13.07398 -12.92792 -12.85283 -12.76636 -12.71494 -12.61693 -12.35154 -12.10011 -11.95535 -11.93015 -11.88311 -11.73185 -11.41581 -11.37943 -11.11038 -10.78882 -10.73207 -10.04255 -9.33549 -8.83504 -8.41390 -7.79232 -5.15270 -0.36834 0.14291 1.50072 1.50734 1.54295 1.58043 1.61724 1.99745 2.30737 2.51385 2.59641 3.36646 3.44596 3.45518 3.59020 3.80104 3.84743 3.98076 4.00019 4.06063 4.27704 4.29738 4.37658 4.45528 4.48511 4.55064 4.62683 4.66125 4.75943 4.79902 4.81915 4.91032 4.96048 5.00596 5.03055 5.08523 5.15324 5.20036 5.25124 5.26680 5.38630 5.47928 5.52708 5.58250 5.70279 5.89023 5.90447 5.93870 6.22025 6.24687 6.55268 7.03815 7.15120 7.72410 8.60401 9.31598 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002928 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.025649 B = 9561.610379 C =11094.033772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.123 4.123 3 C -0.203 4.203 4 C 0.019 3.981 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.179 4.179 8 C 0.570 3.430 9 O -0.581 6.581 10 N -0.694 5.694 11 C 0.142 3.858 12 H 0.092 0.908 13 C -0.134 4.134 14 C 0.147 3.853 15 H 0.101 0.899 16 C -0.127 4.127 17 C -0.120 4.120 18 C 0.126 3.874 19 H 0.102 0.898 20 N -0.609 5.609 21 C -0.217 4.217 22 H 0.086 0.914 23 C -0.065 4.065 24 N -0.945 5.945 25 Si 0.970 3.030 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.129 3.871 30 N -0.364 5.364 31 C -0.061 4.061 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.407 0.593 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.245 0.755 46 H 0.180 0.820 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 -2.473 -7.546 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C -0.227 4.227 4 C -0.084 4.084 5 C -0.106 4.106 6 C -0.135 4.135 7 C -0.185 4.185 8 C 0.358 3.642 9 O -0.463 6.463 10 N -0.342 5.342 11 C 0.036 3.964 12 H 0.110 0.890 13 C -0.174 4.174 14 C 0.040 3.960 15 H 0.119 0.881 16 C -0.167 4.167 17 C -0.159 4.159 18 C 0.019 3.981 19 H 0.120 0.880 20 N -0.330 5.330 21 C -0.345 4.345 22 H 0.103 0.897 23 C -0.258 4.258 24 N -0.594 5.594 25 Si 0.800 3.200 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.195 1.195 29 C 0.006 3.994 30 N -0.029 5.029 31 C -0.186 4.186 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.165 0.835 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.197 0.803 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.988 -3.246 -7.411 21.563 hybrid contribution 0.806 1.293 0.698 1.676 sum -19.181 -1.954 -6.713 20.416 Atomic orbital electron populations 1.20286 0.87167 1.03457 1.02872 1.19953 0.97438 0.91627 1.03640 1.21387 0.89237 1.00080 1.11981 1.19349 0.96525 0.82115 1.10453 1.20791 0.88556 1.01488 0.99731 1.22133 0.99770 0.90848 1.00727 1.20214 0.92097 0.94596 1.11583 1.17928 0.83718 0.86743 0.75848 1.90732 1.87905 1.14585 1.53115 1.45804 1.04830 1.11026 1.72538 1.22567 0.82904 0.94559 0.96411 0.89015 1.23412 0.98489 0.99485 0.96042 1.23464 0.91583 0.84920 0.96035 0.88112 1.23062 0.98668 0.98745 0.96187 1.22813 0.97868 0.98889 0.96357 1.23358 0.92341 0.91805 0.90621 0.88048 1.46723 1.75633 1.01222 1.09449 1.19321 1.28844 0.81645 1.04734 0.89652 1.25471 1.00052 1.01055 0.99267 1.69892 1.39768 1.33702 1.16032 0.85204 0.76273 0.80747 0.77754 1.21611 1.23082 1.19456 1.21767 0.83238 0.98518 0.95885 1.41606 1.05696 1.07244 1.48397 1.22300 0.79156 1.01527 1.15656 0.90533 0.90635 0.90723 0.81937 0.81220 0.83465 0.75623 0.91091 0.94233 0.91229 0.94679 0.89940 0.92532 0.94601 0.80270 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.37 71.24 0.74 -0.16 16 2 C -0.12 -2.21 6.10 -20.14 -0.12 -2.33 16 3 C -0.20 -4.06 10.91 22.70 0.25 -3.81 16 4 C 0.02 0.45 6.71 38.99 0.26 0.71 16 5 C -0.09 -1.90 10.09 22.41 0.23 -1.68 16 6 C -0.11 -2.78 9.73 23.78 0.23 -2.55 16 7 C -0.18 -4.94 5.98 -19.14 -0.11 -5.05 16 8 C 0.57 18.43 7.77 86.68 0.67 19.11 16 9 O -0.58 -21.63 15.93 -4.03 -0.06 -21.69 16 10 N -0.69 -22.41 5.05 -437.08 -2.21 -24.62 16 11 C 0.14 4.91 2.84 46.83 0.13 5.05 16 12 H 0.09 3.08 7.26 -2.39 -0.02 3.07 16 13 C -0.13 -5.22 6.28 32.43 0.20 -5.02 16 14 C 0.15 6.59 4.64 46.60 0.22 6.81 16 15 H 0.10 5.40 5.88 -2.38 -0.01 5.38 16 16 C -0.13 -4.94 6.50 32.58 0.21 -4.73 16 17 C -0.12 -4.05 6.46 32.21 0.21 -3.85 16 18 C 0.13 4.57 5.01 46.23 0.23 4.80 16 19 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 20 N -0.61 -27.92 2.96 -613.31 -1.81 -29.73 16 21 C -0.22 -11.03 10.55 84.03 0.89 -10.14 16 22 H 0.09 4.09 7.85 -2.91 -0.02 4.07 16 23 C -0.07 -3.50 5.47 84.86 0.46 -3.03 16 24 N -0.94 -54.23 10.74 21.65 0.23 -54.00 16 25 Si 0.97 43.79 29.56 68.60 2.03 45.82 16 26 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 C 0.13 3.26 10.45 83.51 0.87 4.14 16 30 N -0.36 -8.62 2.93 -345.32 -1.01 -9.64 16 31 C -0.06 -1.17 11.49 83.26 0.96 -0.22 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.15 3.28 6.58 -2.91 -0.02 3.26 16 38 H 0.41 12.62 6.76 -92.71 -0.63 12.00 16 39 H 0.07 2.53 7.88 -2.39 -0.02 2.51 16 40 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 41 H 0.07 2.34 7.88 -2.39 -0.02 2.32 16 42 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 44 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.24 13.89 8.31 -92.70 -0.77 13.12 16 46 H 0.18 4.13 7.56 -2.91 -0.02 4.11 16 47 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -65.99 380.66 4.05 -61.94 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.37 Total: 33.89 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.53 Total: -1.96 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.80 Total: -117.99 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.99 4.05 -61.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097192016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.012 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds