Wall clock time and date at job start Tue Mar 31 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38943 * 119.67726 * 2 1 4 4 C 1.36439 * 120.61877 * 180.02562 * 3 2 1 5 5 C 1.40109 * 119.82607 * 359.97438 * 4 3 2 6 6 C 1.41587 * 133.37218 * 180.02562 * 5 4 3 7 7 C 1.35867 * 107.72034 * 179.97438 * 6 5 4 8 8 C 1.47063 * 125.42925 * 179.97438 * 7 6 5 9 9 O 1.21655 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.68572 * 32.00973 * 11 10 8 13 13 C 1.55485 * 110.75411 * 268.95217 * 11 10 8 14 14 C 1.55853 * 103.32237 * 241.51531 * 13 11 10 15 15 H 1.09001 * 116.11977 * 159.23872 * 14 13 11 16 16 C 1.55386 * 105.04276 * 288.04016 * 14 13 11 17 17 C 1.54849 * 103.48427 * 72.08410 * 16 14 13 18 18 C 1.55845 * 110.62147 * 154.99665 * 11 10 8 19 19 H 1.08997 * 116.13339 * 319.33734 * 18 11 10 20 20 N 1.50232 * 101.05167 * 33.02759 * 14 13 11 21 21 C 1.36938 * 130.84076 * 126.06520 * 20 14 13 22 22 H 1.07999 * 120.00325 * 179.65847 * 21 20 14 23 23 C 1.38815 * 119.99817 * 359.66493 * 21 20 14 24 24 N 1.31621 * 119.99673 * 359.71804 * 23 21 20 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47071 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47211 * 119.99797 * 25 23 21 28 28 H 1.48493 * 109.47327 * 239.99664 * 25 23 21 29 29 N 1.38139 * 109.14136 * 0.22728 * 7 6 5 30 30 H 0.97001 * 125.60536 * 179.75054 * 29 7 6 31 31 C 1.37483 * 108.78885 * 359.62212 * 29 7 6 32 32 C 1.37673 * 119.67648 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47058 * 269.98423 * 1 2 3 34 34 H 1.09002 * 109.46968 * 29.98281 * 1 2 3 35 35 H 1.08997 * 109.47064 * 149.98481 * 1 2 3 36 36 H 1.08000 * 119.69047 * 0.02562 * 3 2 1 37 37 H 1.07998 * 120.08655 * 179.97438 * 4 3 2 38 38 H 1.07996 * 126.13945 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99373 * 359.97438 * 10 8 7 40 40 H 1.08999 * 110.60571 * 123.10462 * 13 11 10 41 41 H 1.08989 * 110.75615 * 359.97438 * 13 11 10 42 42 H 1.08998 * 110.71948 * 313.52463 * 16 14 13 43 43 H 1.09005 * 110.49328 * 190.52550 * 16 14 13 44 44 H 1.09004 * 110.62288 * 241.37847 * 17 16 14 45 45 H 1.08995 * 110.76929 * 118.42686 * 17 16 14 46 46 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.09373 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2296 -0.0005 5 6 4.2759 0.0257 -0.0005 6 6 5.6576 -0.2833 -0.0005 7 6 5.7788 -1.6365 0.0001 8 6 7.0483 -2.3788 -0.0003 9 8 8.1052 -1.7763 -0.0007 10 7 7.0410 -3.7266 -0.0002 11 6 8.3057 -4.4659 -0.0011 12 1 9.0750 -3.9137 0.5388 13 6 8.7669 -4.7671 -1.4551 14 6 8.7872 -6.3245 -1.5101 15 1 8.7389 -6.7703 -2.5036 16 6 10.0125 -6.7424 -0.6508 17 6 9.5552 -6.4457 0.7986 18 6 8.1129 -5.8841 0.6157 19 1 7.4707 -5.9422 1.4945 20 7 7.6519 -6.6602 -0.5853 21 6 6.5417 -7.4388 -0.7761 22 1 5.8279 -7.5669 0.0242 23 6 6.3338 -8.0635 -1.9981 24 7 7.2010 -7.9030 -2.9752 25 14 4.8197 -9.1261 -2.2583 26 1 4.0058 -9.1405 -1.0164 27 1 4.0115 -8.5716 -3.3740 28 1 5.2384 -10.5113 -2.5912 29 7 4.5193 -2.2040 -0.0048 30 1 4.3285 -3.1551 -0.0089 31 6 3.5809 -1.1993 0.0001 32 6 2.1886 -1.1962 -0.0005 33 1 -0.3633 -0.0003 1.0276 34 1 -0.3633 0.8902 -0.5136 35 1 -0.3633 -0.8898 -0.5141 36 1 1.6446 2.1365 0.0004 37 1 4.0851 2.1728 -0.0009 38 1 6.4695 0.4289 -0.0009 39 1 6.1983 -4.2069 0.0005 40 1 9.7637 -4.3635 -1.6327 41 1 8.0549 -4.3670 -2.1768 42 1 10.8862 -6.1436 -0.9080 43 1 10.2229 -7.8045 -0.7771 44 1 10.2021 -5.6996 1.2602 45 1 9.5391 -7.3589 1.3934 46 1 7.0555 -8.3392 -3.8293 47 1 1.6449 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097595048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:18 Heat of formation + Delta-G solvation = 60.333209 kcal Electronic energy + Delta-G solvation = -29057.357092 eV Core-core repulsion = 25206.205565 eV Total energy + Delta-G solvation = -3851.151527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60483 -39.74151 -38.43362 -37.19784 -34.00907 -32.77024 -32.56838 -30.80036 -29.59245 -29.20499 -28.89876 -28.01739 -26.45424 -24.33513 -23.47551 -22.19444 -21.17988 -20.79598 -19.93918 -19.71319 -18.87645 -18.14689 -17.08425 -16.81705 -15.94115 -15.62661 -15.14117 -15.04092 -14.86638 -14.22198 -14.21471 -13.94629 -13.92115 -13.62916 -13.54959 -13.38332 -12.99263 -12.71522 -12.31898 -12.12385 -11.92110 -11.81748 -11.41207 -11.26240 -11.19828 -11.02150 -11.01576 -10.99378 -10.61507 -10.43254 -10.16514 -10.06191 -9.93912 -9.87374 -9.36487 -9.25621 -9.06227 -8.64395 -8.26553 -7.78377 -7.03944 -5.83486 -3.23163 0.72200 1.51941 2.11560 2.88032 3.28591 3.33577 3.37111 3.39049 3.50205 3.77108 4.31880 4.55128 4.72821 4.85041 4.97953 5.04231 5.07540 5.25612 5.26833 5.31364 5.40636 5.50751 5.55463 5.58240 5.61078 5.71338 5.80238 5.87472 5.97400 5.98002 6.02698 6.07501 6.21252 6.34689 6.37145 6.39512 6.43398 6.52031 6.55395 6.62151 6.66150 6.76068 6.87918 6.97653 7.01678 7.25131 7.32466 7.38305 7.70765 7.81440 8.08813 8.38385 8.98034 9.61361 10.42418 11.25307 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003256 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.573495 B = 8597.487498 C =10549.730940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.061 4.061 3 C -0.150 4.150 4 C -0.059 4.059 5 C -0.123 4.123 6 C -0.116 4.116 7 C 0.027 3.973 8 C 0.577 3.423 9 O -0.533 6.533 10 N -0.700 5.700 11 C 0.128 3.872 12 H 0.084 0.916 13 C -0.142 4.142 14 C 0.153 3.847 15 H 0.153 0.847 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.124 3.876 19 H 0.088 0.912 20 N -0.591 5.591 21 C -0.218 4.218 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.290 1.290 29 N -0.575 5.575 30 H 0.421 0.579 31 C 0.116 3.884 32 C -0.133 4.133 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.154 0.846 39 H 0.398 0.602 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.254 0.746 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 13.872 6.558 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.169 4.169 4 C -0.078 4.078 5 C -0.127 4.127 6 C -0.143 4.143 7 C -0.083 4.083 8 C 0.362 3.638 9 O -0.410 6.410 10 N -0.349 5.349 11 C 0.022 3.978 12 H 0.102 0.898 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.015 3.985 19 H 0.106 0.894 20 N -0.312 5.312 21 C -0.346 4.346 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.564 5.564 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 N -0.180 5.180 30 H 0.259 0.741 31 C 0.005 3.995 32 C -0.153 4.153 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.172 0.828 39 H 0.232 0.768 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.879 13.885 6.375 16.756 hybrid contribution -1.225 -1.364 -0.163 1.841 sum -8.104 12.521 6.212 16.157 Atomic orbital electron populations 1.20781 0.91016 1.02802 1.02299 1.19579 0.95737 0.92231 0.98725 1.20487 0.93916 0.97290 1.05206 1.20365 0.93626 0.96210 0.97557 1.18202 0.93090 0.92858 1.08565 1.20857 0.95280 0.93213 1.04931 1.20361 0.84218 0.93455 1.10258 1.17227 0.86914 0.82312 0.77339 1.90810 1.30579 1.68644 1.51000 1.45932 1.10894 1.05087 1.72951 1.22822 0.84031 0.92655 0.98242 0.89795 1.23564 0.99409 1.00413 0.94894 1.23666 0.84100 0.89705 0.97834 0.83002 1.23001 0.98756 1.00412 0.95696 1.22886 0.96629 0.99701 0.97556 1.23177 0.94267 0.89497 0.91526 0.89442 1.46554 1.22593 1.53843 1.08210 1.19029 0.97197 1.20904 0.97458 0.90408 1.24710 0.98836 1.00863 0.96045 1.69471 1.35870 1.47248 1.03840 0.86015 0.81890 0.80067 0.77560 1.20632 1.21807 1.21698 1.42038 1.04146 1.08359 1.63420 0.74086 1.18292 0.90772 0.87719 1.02699 1.19918 0.89806 0.98433 1.07180 0.91151 0.91434 0.91562 0.86058 0.85802 0.82807 0.76766 0.92565 0.92189 0.93172 0.92595 0.92909 0.92389 0.93499 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.99 36.01 0.36 -0.44 16 2 C -0.06 -0.61 5.88 -104.57 -0.61 -1.23 16 3 C -0.15 -1.47 9.61 -39.97 -0.38 -1.85 16 4 C -0.06 -0.65 10.06 -39.53 -0.40 -1.04 16 5 C -0.12 -1.63 6.16 -106.93 -0.66 -2.28 16 6 C -0.12 -1.65 10.53 -39.16 -0.41 -2.07 16 7 C 0.03 0.40 6.97 -82.29 -0.57 -0.17 16 8 C 0.58 9.88 7.80 -12.68 -0.10 9.78 16 9 O -0.53 -10.55 16.49 5.23 0.09 -10.47 16 10 N -0.70 -11.78 5.09 -52.25 -0.27 -12.04 16 11 C 0.13 2.33 2.82 -65.09 -0.18 2.15 16 12 H 0.08 1.52 7.23 -51.93 -0.38 1.15 16 13 C -0.14 -2.84 6.26 -23.89 -0.15 -2.99 16 14 C 0.15 3.39 4.69 -63.05 -0.30 3.10 16 15 H 0.15 3.89 5.52 -51.93 -0.29 3.60 16 16 C -0.14 -2.68 6.42 -24.49 -0.16 -2.84 16 17 C -0.13 -2.25 6.44 -24.23 -0.16 -2.40 16 18 C 0.12 2.33 5.06 -62.80 -0.32 2.01 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 20 N -0.59 -13.48 2.99 -146.08 -0.44 -13.91 16 21 C -0.22 -5.49 10.59 -15.06 -0.16 -5.65 16 22 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -25.10 10.47 55.49 0.58 -24.52 16 25 Si 0.91 20.83 29.55 -169.99 -5.02 15.81 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 N -0.58 -7.55 6.07 -7.36 -0.04 -7.59 16 30 H 0.42 4.81 8.12 -40.82 -0.33 4.48 16 31 C 0.12 1.51 7.25 -83.98 -0.61 0.90 16 32 C -0.13 -1.49 9.71 -39.42 -0.38 -1.88 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.40 6.36 7.71 -40.82 -0.31 6.05 16 40 H 0.06 1.05 7.80 -51.93 -0.41 0.64 16 41 H 0.06 1.30 8.00 -51.94 -0.42 0.89 16 42 H 0.05 0.86 7.80 -51.93 -0.41 0.46 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -29.79 380.81 -11.36 -41.15 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.71 Total: 13.06 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -5.29 Total: -7.22 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.17 Total: -58.07 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.79 -11.36 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097595048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.479 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds