Wall clock time and date at job start Tue Mar 31 2020 22:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38943 * 119.67726 * 2 1 4 4 C 1.36439 * 120.61877 * 180.02562 * 3 2 1 5 5 C 1.40109 * 119.82607 * 359.97438 * 4 3 2 6 6 C 1.41587 * 133.37218 * 180.02562 * 5 4 3 7 7 C 1.35867 * 107.72034 * 179.97438 * 6 5 4 8 8 C 1.47063 * 125.42925 * 179.97438 * 7 6 5 9 9 O 1.21655 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00280 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.68572 * 32.00973 * 11 10 8 13 13 C 1.55485 * 110.75411 * 268.95217 * 11 10 8 14 14 C 1.55853 * 103.32237 * 241.51531 * 13 11 10 15 15 H 1.09001 * 116.11977 * 159.23872 * 14 13 11 16 16 C 1.55386 * 105.04276 * 288.04016 * 14 13 11 17 17 C 1.54849 * 103.48427 * 72.08410 * 16 14 13 18 18 C 1.55845 * 110.62147 * 154.99665 * 11 10 8 19 19 H 1.08997 * 116.13339 * 319.33734 * 18 11 10 20 20 N 1.50232 * 101.05167 * 33.02759 * 14 13 11 21 21 C 1.36938 * 130.84076 * 126.06520 * 20 14 13 22 22 H 1.07999 * 120.00325 * 179.65847 * 21 20 14 23 23 C 1.38815 * 119.99817 * 359.66493 * 21 20 14 24 24 N 1.31621 * 119.99673 * 359.71804 * 23 21 20 25 25 Si 1.86795 * 120.00115 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47071 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47211 * 119.99797 * 25 23 21 28 28 H 1.48493 * 109.47327 * 239.99664 * 25 23 21 29 29 N 1.38139 * 109.14136 * 0.22728 * 7 6 5 30 30 H 0.97001 * 125.60536 * 179.75054 * 29 7 6 31 31 C 1.37483 * 108.78885 * 359.62212 * 29 7 6 32 32 C 1.37673 * 119.67648 * 180.02562 * 2 1 3 33 33 H 1.08995 * 109.47058 * 269.98423 * 1 2 3 34 34 H 1.09002 * 109.46968 * 29.98281 * 1 2 3 35 35 H 1.08997 * 109.47064 * 149.98481 * 1 2 3 36 36 H 1.08000 * 119.69047 * 0.02562 * 3 2 1 37 37 H 1.07998 * 120.08655 * 179.97438 * 4 3 2 38 38 H 1.07996 * 126.13945 * 359.97438 * 6 5 4 39 39 H 0.96997 * 119.99373 * 359.97438 * 10 8 7 40 40 H 1.08999 * 110.60571 * 123.10462 * 13 11 10 41 41 H 1.08989 * 110.75615 * 359.97438 * 13 11 10 42 42 H 1.08998 * 110.71948 * 313.52463 * 16 14 13 43 43 H 1.09005 * 110.49328 * 190.52550 * 16 14 13 44 44 H 1.09004 * 110.62288 * 241.37847 * 17 16 14 45 45 H 1.08995 * 110.76929 * 118.42686 * 17 16 14 46 46 H 0.97000 * 120.00043 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.09373 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2296 -0.0005 5 6 4.2759 0.0257 -0.0005 6 6 5.6576 -0.2833 -0.0005 7 6 5.7788 -1.6365 0.0001 8 6 7.0483 -2.3788 -0.0003 9 8 8.1052 -1.7763 -0.0007 10 7 7.0410 -3.7266 -0.0002 11 6 8.3057 -4.4659 -0.0011 12 1 9.0750 -3.9137 0.5388 13 6 8.7669 -4.7671 -1.4551 14 6 8.7872 -6.3245 -1.5101 15 1 8.7389 -6.7703 -2.5036 16 6 10.0125 -6.7424 -0.6508 17 6 9.5552 -6.4457 0.7986 18 6 8.1129 -5.8841 0.6157 19 1 7.4707 -5.9422 1.4945 20 7 7.6519 -6.6602 -0.5853 21 6 6.5417 -7.4388 -0.7761 22 1 5.8279 -7.5669 0.0242 23 6 6.3338 -8.0635 -1.9981 24 7 7.2010 -7.9030 -2.9752 25 14 4.8197 -9.1261 -2.2583 26 1 4.0058 -9.1405 -1.0164 27 1 4.0115 -8.5716 -3.3740 28 1 5.2384 -10.5113 -2.5912 29 7 4.5193 -2.2040 -0.0048 30 1 4.3285 -3.1551 -0.0089 31 6 3.5809 -1.1993 0.0001 32 6 2.1886 -1.1962 -0.0005 33 1 -0.3633 -0.0003 1.0276 34 1 -0.3633 0.8902 -0.5136 35 1 -0.3633 -0.8898 -0.5141 36 1 1.6446 2.1365 0.0004 37 1 4.0851 2.1728 -0.0009 38 1 6.4695 0.4289 -0.0009 39 1 6.1983 -4.2069 0.0005 40 1 9.7637 -4.3635 -1.6327 41 1 8.0549 -4.3670 -2.1768 42 1 10.8862 -6.1436 -0.9080 43 1 10.2229 -7.8045 -0.7771 44 1 10.2021 -5.6996 1.2602 45 1 9.5391 -7.3589 1.3934 46 1 7.0555 -8.3392 -3.8293 47 1 1.6449 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097595048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:17 Heat of formation + Delta-G solvation = 44.293988 kcal Electronic energy + Delta-G solvation = -29058.052605 eV Core-core repulsion = 25206.205565 eV Total energy + Delta-G solvation = -3851.847040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61190 -41.20627 -39.83106 -38.12992 -35.47046 -34.47656 -33.58469 -31.74417 -31.00747 -30.61786 -30.30708 -29.46953 -27.41735 -26.14417 -24.54659 -23.24404 -22.40531 -21.83419 -21.57204 -20.99958 -20.38073 -19.36302 -18.87030 -17.84688 -17.25642 -16.79602 -16.65295 -16.33995 -16.02679 -15.77229 -15.45088 -15.18642 -15.01451 -14.81333 -14.70876 -14.37161 -14.11913 -13.76118 -13.70509 -13.64359 -12.94248 -12.93593 -12.91335 -12.81231 -12.73868 -12.58882 -12.14989 -12.13199 -11.96239 -11.90790 -11.81992 -11.74841 -11.46053 -11.05247 -10.98654 -10.83107 -10.79249 -10.11201 -9.18605 -8.90252 -8.73247 -7.78390 -5.18485 -0.26112 0.65578 1.04909 1.46016 1.47735 1.56050 1.85645 2.09724 2.26144 2.47406 2.89691 3.34712 3.42341 3.63422 3.72538 3.96502 4.00112 4.04064 4.13306 4.24333 4.30471 4.38295 4.42682 4.45114 4.47686 4.59042 4.63573 4.71239 4.81337 4.84206 4.88260 4.89986 4.94563 5.01925 5.04860 5.14735 5.15905 5.29232 5.35771 5.42582 5.49630 5.54718 5.55540 5.66412 5.67539 5.73858 5.87326 6.12333 6.25081 6.33963 6.49864 7.02158 7.04371 7.70090 8.55793 9.28918 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003256 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.573495 B = 8597.487498 C =10549.730940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.149 4.149 4 C -0.064 4.064 5 C -0.147 4.147 6 C -0.114 4.114 7 C 0.002 3.998 8 C 0.580 3.420 9 O -0.564 6.564 10 N -0.698 5.698 11 C 0.139 3.861 12 H 0.093 0.907 13 C -0.133 4.133 14 C 0.140 3.860 15 H 0.115 0.885 16 C -0.132 4.132 17 C -0.119 4.119 18 C 0.126 3.874 19 H 0.103 0.897 20 N -0.610 5.610 21 C -0.214 4.214 22 H 0.086 0.914 23 C -0.066 4.066 24 N -0.947 5.947 25 Si 0.972 3.028 26 H -0.265 1.265 27 H -0.299 1.299 28 H -0.300 1.300 29 N -0.573 5.573 30 H 0.425 0.575 31 C 0.105 3.895 32 C -0.151 4.151 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.245 0.755 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 15.501 8.297 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.083 4.083 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.108 4.108 8 C 0.368 3.632 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.033 3.967 12 H 0.111 0.889 13 C -0.174 4.174 14 C 0.033 3.967 15 H 0.132 0.868 16 C -0.172 4.172 17 C -0.159 4.159 18 C 0.019 3.981 19 H 0.121 0.879 20 N -0.331 5.331 21 C -0.343 4.343 22 H 0.104 0.896 23 C -0.259 4.259 24 N -0.597 5.597 25 Si 0.802 3.198 26 H -0.189 1.189 27 H -0.227 1.227 28 H -0.228 1.228 29 N -0.178 5.178 30 H 0.264 0.736 31 C -0.005 4.005 32 C -0.172 4.172 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.620 15.519 8.154 19.536 hybrid contribution -0.782 -1.737 -0.691 2.026 sum -9.402 13.782 7.463 18.277 Atomic orbital electron populations 1.20861 0.88748 1.03860 1.03377 1.20042 0.97428 0.91819 0.96357 1.20893 0.93642 0.98518 1.03740 1.20690 0.94351 0.96241 0.96977 1.18439 0.92679 0.94035 1.09982 1.21052 0.96193 0.93061 1.03844 1.20048 0.84081 0.93647 1.12994 1.17433 0.87337 0.82127 0.76316 1.90778 1.31866 1.69136 1.52579 1.45851 1.10654 1.05155 1.72911 1.22652 0.84805 0.92548 0.96685 0.88899 1.23433 0.99519 0.98788 0.95651 1.23490 0.85537 0.90847 0.96795 0.86755 1.22899 0.98244 0.99666 0.96367 1.22843 0.96002 1.00637 0.96391 1.23380 0.95158 0.88921 0.90664 0.87904 1.46729 1.22329 1.54062 1.09978 1.19384 0.97745 1.19861 0.97299 0.89577 1.25414 1.01329 1.02816 0.96293 1.69726 1.37468 1.48574 1.03883 0.85088 0.79305 0.77851 0.77545 1.18905 1.22677 1.22757 1.41952 1.03602 1.08688 1.63515 0.73575 1.18632 0.91544 0.87616 1.02726 1.20199 0.89147 0.99774 1.08061 0.89898 0.89847 0.91121 0.83087 0.83786 0.82449 0.76326 0.91220 0.94866 0.90946 0.94308 0.89889 0.92096 0.94544 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 71.24 0.71 -0.50 16 2 C -0.05 -0.95 5.88 -19.83 -0.12 -1.06 16 3 C -0.15 -2.47 9.61 22.02 0.21 -2.26 16 4 C -0.06 -1.27 10.06 22.30 0.22 -1.05 16 5 C -0.15 -3.78 6.16 -21.36 -0.13 -3.91 16 6 C -0.11 -3.25 10.53 22.55 0.24 -3.01 16 7 C 0.00 0.06 6.97 39.91 0.28 0.34 16 8 C 0.58 20.00 7.80 86.56 0.68 20.67 16 9 O -0.56 -22.40 16.49 -4.20 -0.07 -22.47 16 10 N -0.70 -23.35 5.09 -437.45 -2.23 -25.57 16 11 C 0.14 4.92 2.82 46.83 0.13 5.06 16 12 H 0.09 3.19 7.23 -2.39 -0.02 3.17 16 13 C -0.13 -5.37 6.26 32.44 0.20 -5.16 16 14 C 0.14 6.29 4.69 46.07 0.22 6.51 16 15 H 0.12 6.14 5.52 -2.39 -0.01 6.12 16 16 C -0.13 -4.99 6.42 32.05 0.21 -4.79 16 17 C -0.12 -3.92 6.44 32.21 0.21 -3.71 16 18 C 0.13 4.54 5.06 46.23 0.23 4.77 16 19 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 20 N -0.61 -27.79 2.99 -616.08 -1.84 -29.63 16 21 C -0.21 -10.80 10.59 84.03 0.89 -9.91 16 22 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 23 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 24 N -0.95 -53.83 10.47 21.65 0.23 -53.60 16 25 Si 0.97 43.53 29.55 68.60 2.03 45.56 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 N -0.57 -15.03 6.07 -177.19 -1.08 -16.10 16 30 H 0.42 9.78 8.12 -92.71 -0.75 9.02 16 31 C 0.11 2.68 7.25 39.13 0.28 2.97 16 32 C -0.15 -3.16 9.71 22.37 0.22 -2.94 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 35 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.40 12.83 7.71 -92.71 -0.72 12.11 16 40 H 0.07 2.57 7.80 -2.39 -0.02 2.55 16 41 H 0.03 1.48 8.00 -2.39 -0.02 1.46 16 42 H 0.07 2.38 7.80 -2.39 -0.02 2.36 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.08 2.27 7.82 -2.38 -0.02 2.25 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 47 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -65.60 380.81 1.73 -63.87 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.46 Total: 38.97 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.15 Total: -1.03 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -4.92 Total: -124.90 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.07 Total: -22.47 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.60 1.73 -63.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097595048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.167 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds