Wall clock time and date at job start Tue Mar 31 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38760 * 119.84854 * 2 1 4 4 C 1.37767 * 120.63185 * 179.57488 * 3 2 1 5 5 C 1.39124 * 119.92932 * 0.66075 * 4 3 2 6 6 N 1.37961 * 133.18979 * 179.21227 * 5 4 3 7 7 H 0.96997 * 124.79148 * 0.02562 * 6 5 4 8 8 C 1.35471 * 110.42529 * 180.02562 * 6 5 4 9 9 C 1.36374 * 109.76927 * 0.02562 * 8 6 5 10 10 C 1.46916 * 126.76590 * 180.02562 * 9 8 6 11 11 O 1.21671 * 119.99831 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00438 * 0.02562 * 10 9 8 13 13 C 1.46499 * 120.00333 * 179.97438 * 12 10 9 14 14 H 1.09008 * 110.68243 * 32.01330 * 13 12 10 15 15 C 1.55478 * 110.75775 * 268.96043 * 13 12 10 16 16 C 1.55845 * 103.32174 * 241.51067 * 15 13 12 17 17 H 1.09005 * 116.12422 * 159.23661 * 16 15 13 18 18 C 1.56855 * 105.77912 * 288.56510 * 16 15 13 19 19 C 1.54844 * 103.35668 * 71.46140 * 18 16 15 20 20 C 1.55840 * 110.62582 * 154.99586 * 13 12 10 21 21 H 1.08998 * 115.56895 * 319.68410 * 20 13 12 22 22 N 1.50234 * 101.05342 * 33.02501 * 16 15 13 23 23 C 1.36945 * 130.84057 * 126.06247 * 22 16 15 24 24 H 1.07999 * 120.00077 * 179.66596 * 23 22 16 25 25 C 1.38812 * 119.99637 * 359.66430 * 23 22 16 26 26 N 1.31617 * 120.00227 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46819 * 59.99973 * 27 25 23 29 29 H 1.48494 * 109.47285 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47086 * 300.00269 * 27 25 23 31 31 C 1.40396 * 119.36192 * 359.54172 * 5 4 3 32 32 C 1.37753 * 119.84804 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47324 * 269.97988 * 1 2 3 34 34 H 1.09003 * 109.46850 * 29.97980 * 1 2 3 35 35 H 1.09003 * 109.47124 * 149.98164 * 1 2 3 36 36 H 1.07997 * 119.68001 * 0.02562 * 3 2 1 37 37 H 1.08002 * 120.03093 * 179.89663 * 4 3 2 38 38 H 1.07999 * 125.11880 * 179.97438 * 8 6 5 39 39 H 0.96999 * 119.99702 * 0.02562 * 12 10 9 40 40 H 1.09002 * 110.61164 * 123.09871 * 15 13 12 41 41 H 1.08997 * 110.75754 * 359.97438 * 15 13 12 42 42 H 1.09001 * 110.43268 * 313.10489 * 18 16 15 43 43 H 1.09001 * 111.03898 * 190.09807 * 18 16 15 44 44 H 1.09004 * 110.62498 * 241.78509 * 19 18 16 45 45 H 1.08994 * 110.76793 * 118.82867 * 19 18 16 46 46 H 0.97005 * 120.00046 * 179.97438 * 26 25 23 47 47 H 1.08001 * 120.16832 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.2035 0.0000 4 6 3.5752 1.2224 0.0088 5 6 4.2858 0.0263 0.0039 6 7 5.6328 -0.2717 -0.0038 7 1 6.3453 0.3866 -0.0069 8 6 5.8202 -1.6133 -0.0065 9 6 4.6130 -2.2477 -0.0013 10 6 4.3820 -3.6986 -0.0015 11 8 3.2458 -4.1337 0.0030 12 7 5.4287 -4.5477 -0.0068 13 6 5.1983 -5.9944 -0.0065 14 1 4.2813 -6.2384 -0.5430 15 6 5.1445 -6.5435 1.4471 16 6 6.3359 -7.5470 1.4963 17 1 6.7152 -7.7934 2.4881 18 6 5.8972 -8.7730 0.6219 19 6 5.9483 -8.2185 -0.8230 20 6 6.4145 -6.7441 -0.6290 21 1 6.8596 -6.2725 -1.5051 22 7 7.3118 -6.8811 0.5682 23 6 8.6187 -6.5167 0.7543 24 1 9.1672 -6.0451 -0.0477 25 6 9.2383 -6.7534 1.9736 26 7 8.5700 -7.3285 2.9508 27 14 11.0212 -6.2569 2.2272 28 1 11.1592 -4.7910 2.0331 29 1 11.4437 -6.6152 3.6049 30 1 11.8778 -6.9690 1.2452 31 6 3.5855 -1.1905 -0.0003 32 6 2.1926 -1.1948 -0.0005 33 1 -0.3634 -0.0004 1.0276 34 1 -0.3633 0.8902 -0.5135 35 1 -0.3633 -0.8898 -0.5141 36 1 1.6500 2.1343 0.0004 37 1 4.1029 2.1647 0.0070 38 1 6.7810 -2.1064 -0.0128 39 1 6.3345 -4.2008 -0.0101 40 1 4.2010 -7.0585 1.6281 41 1 5.2896 -5.7400 2.1692 42 1 4.8839 -9.0811 0.8795 43 1 6.5915 -9.6052 0.7385 44 1 4.9601 -8.2514 -1.2820 45 1 6.6684 -8.7730 -1.4245 46 1 9.0032 -7.4942 3.8028 47 1 1.6529 -2.1303 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098469181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:14 Heat of formation + Delta-G solvation = 42.039696 kcal Electronic energy + Delta-G solvation = -29217.991045 eV Core-core repulsion = 25366.046251 eV Total energy + Delta-G solvation = -3851.944793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.40860 -41.03062 -39.48040 -38.31547 -35.20390 -34.37152 -33.11102 -32.32495 -30.91789 -30.71909 -30.04864 -28.79879 -27.32618 -26.09728 -24.40204 -23.60130 -22.50556 -21.89263 -21.47870 -20.63371 -20.09765 -19.12017 -18.79979 -17.54669 -17.21509 -16.85514 -16.67746 -16.07775 -15.96853 -15.73255 -15.44659 -15.14668 -15.07438 -14.78253 -14.70035 -14.20425 -14.19802 -13.69322 -13.64747 -13.55194 -12.95509 -12.87151 -12.82689 -12.76055 -12.64977 -12.48527 -12.13308 -12.08935 -11.96752 -11.88512 -11.85892 -11.68438 -11.19036 -10.91131 -10.89467 -10.71693 -10.66059 -9.89156 -9.14078 -8.84350 -8.70742 -7.71784 -5.11870 0.01822 0.55969 1.04377 1.50837 1.53453 1.59253 2.05545 2.39324 2.47901 2.53436 2.94348 3.41401 3.48243 3.69182 3.86211 3.93718 4.04754 4.08664 4.12037 4.29333 4.31319 4.43145 4.47338 4.48845 4.51690 4.61245 4.67632 4.73014 4.79613 4.85373 4.87219 4.90336 4.94908 5.11461 5.14246 5.19245 5.21378 5.22772 5.40522 5.42015 5.54765 5.56101 5.63787 5.64708 5.75478 5.80394 5.92621 6.14619 6.29932 6.54799 6.77791 7.08783 7.41890 7.76253 8.62835 9.35498 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.003081 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.688520 B = 9085.736984 C =10460.865149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.115 4.115 5 C 0.067 3.933 6 N -0.559 5.559 7 H 0.439 0.561 8 C 0.139 3.861 9 C -0.272 4.272 10 C 0.583 3.417 11 O -0.595 6.595 12 N -0.700 5.700 13 C 0.142 3.858 14 H 0.082 0.918 15 C -0.131 4.131 16 C 0.141 3.859 17 H 0.115 0.885 18 C -0.133 4.133 19 C -0.119 4.119 20 C 0.129 3.871 21 H 0.103 0.897 22 N -0.609 5.609 23 C -0.213 4.213 24 H 0.089 0.911 25 C -0.068 4.068 26 N -0.949 5.949 27 Si 0.975 3.025 28 H -0.275 1.275 29 H -0.305 1.305 30 H -0.283 1.283 31 C -0.089 4.089 32 C -0.101 4.101 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.208 0.792 39 H 0.405 0.595 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.244 0.756 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 17.434 -8.200 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.123 4.123 4 C -0.135 4.135 5 C -0.038 4.038 6 N -0.162 5.162 7 H 0.281 0.719 8 C 0.003 3.997 9 C -0.283 4.283 10 C 0.373 3.627 11 O -0.478 6.478 12 N -0.349 5.349 13 C 0.035 3.965 14 H 0.100 0.900 15 C -0.172 4.172 16 C 0.034 3.966 17 H 0.133 0.867 18 C -0.172 4.172 19 C -0.159 4.159 20 C 0.022 3.978 21 H 0.121 0.879 22 N -0.330 5.330 23 C -0.342 4.342 24 H 0.106 0.894 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.805 3.195 28 H -0.201 1.201 29 H -0.231 1.231 30 H -0.210 1.210 31 C -0.093 4.093 32 C -0.120 4.120 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.225 0.775 39 H 0.240 0.760 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.030 17.254 -8.049 21.072 hybrid contribution 1.722 -0.141 0.672 1.854 sum -7.309 17.113 -7.377 20.017 Atomic orbital electron populations 1.20775 0.89474 1.03391 1.02823 1.20063 0.97426 0.92312 1.01302 1.21092 0.93154 0.98079 0.99976 1.20422 0.94023 0.95152 1.03901 1.18465 0.83737 0.95169 1.06415 1.41474 1.06204 1.06701 1.61830 0.71910 1.22512 0.99179 0.83110 0.94850 1.20079 0.93921 0.91652 1.22626 1.17615 0.84325 0.85659 0.75093 1.90680 1.23855 1.79528 1.53692 1.45704 1.08868 1.06303 1.74027 1.22469 0.98677 0.79146 0.96158 0.90021 1.23374 0.98625 0.99079 0.96084 1.23765 0.86316 0.89864 0.96621 0.86743 1.23121 0.99461 0.98180 0.96438 1.22819 1.00749 0.95978 0.96356 1.23342 0.88975 0.94823 0.90705 0.87876 1.46710 1.07789 1.68483 1.10018 1.19348 0.86188 1.31248 0.97410 0.89371 1.25436 1.01672 1.02646 0.96291 1.69724 1.36434 1.49730 1.04049 0.85196 0.80345 0.78143 0.75864 1.20054 1.23142 1.20998 1.19045 0.93501 0.91930 1.04815 1.20552 0.92233 0.98290 1.00938 0.90749 0.89379 0.92287 0.82306 0.82580 0.77530 0.76006 0.92006 0.94840 0.91474 0.94191 0.90324 0.92032 0.94622 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.00 71.24 0.71 -1.11 16 2 C -0.11 -2.50 5.88 -19.85 -0.12 -2.62 16 3 C -0.10 -1.83 9.66 22.28 0.22 -1.61 16 4 C -0.11 -2.00 10.07 22.37 0.23 -1.78 16 5 C 0.07 1.54 7.26 38.92 0.28 1.82 16 6 N -0.56 -9.82 5.99 -187.08 -1.12 -10.94 16 7 H 0.44 3.99 8.96 -92.71 -0.83 3.16 16 8 C 0.14 3.06 11.33 83.70 0.95 4.01 16 9 C -0.27 -8.55 6.27 -19.02 -0.12 -8.67 16 10 C 0.58 21.87 7.80 86.52 0.67 22.54 16 11 O -0.59 -26.44 15.81 -4.26 -0.07 -26.51 16 12 N -0.70 -24.66 5.08 -437.61 -2.22 -26.88 16 13 C 0.14 5.36 2.84 46.83 0.13 5.49 16 14 H 0.08 3.10 7.26 -2.38 -0.02 3.08 16 15 C -0.13 -5.56 6.28 32.43 0.20 -5.35 16 16 C 0.14 6.54 4.72 46.60 0.22 6.76 16 17 H 0.12 6.27 5.52 -2.38 -0.01 6.26 16 18 C -0.13 -5.21 6.50 32.57 0.21 -5.00 16 19 C -0.12 -4.12 6.46 32.21 0.21 -3.91 16 20 C 0.13 4.81 5.01 46.23 0.23 5.04 16 21 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 22 N -0.61 -28.24 2.97 -613.33 -1.82 -30.06 16 23 C -0.21 -10.79 10.59 84.03 0.89 -9.90 16 24 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 26 N -0.95 -54.38 10.47 21.65 0.23 -54.16 16 27 Si 0.97 43.29 29.55 68.60 2.03 45.31 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 31 C -0.09 -2.73 6.27 -20.08 -0.13 -2.85 16 32 C -0.10 -3.10 9.49 22.41 0.21 -2.88 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 35 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 36 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.21 3.32 7.38 -2.91 -0.02 3.30 16 39 H 0.40 13.02 7.54 -92.71 -0.70 12.32 16 40 H 0.06 2.46 7.88 -2.39 -0.02 2.44 16 41 H 0.03 1.56 8.00 -2.39 -0.02 1.54 16 42 H 0.07 2.34 7.88 -2.39 -0.02 2.32 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.32 7.85 -2.38 -0.02 2.30 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 47 H 0.10 3.64 7.45 -2.91 -0.02 3.62 16 Total: -1.00 -73.06 379.81 1.98 -71.08 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -0.51 Total: 35.35 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.47 Total: -3.20 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -4.94 Total: -122.04 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.06 1.98 -71.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098469181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.122 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds