Wall clock time and date at job start Tue Mar 31 2020 23:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37364 * 125.83081 * 2 1 4 4 N 1.29404 * 108.82810 * 180.30124 * 3 2 1 5 5 N 1.40176 * 108.14081 * 359.73783 * 4 3 2 6 6 C 1.46501 * 126.34786 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46681 * 269.99416 * 6 5 4 8 8 O 1.21281 * 120.00435 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00297 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.51028 * 305.09983 * 11 10 9 13 13 C 1.53298 * 109.51119 * 184.99954 * 11 10 9 14 14 N 1.47154 * 108.38080 * 187.77173 * 13 11 10 15 15 C 1.36939 * 120.98091 * 230.51501 * 14 13 11 16 16 H 1.07995 * 120.00510 * 153.32935 * 15 14 13 17 17 C 1.38818 * 119.99742 * 333.32691 * 15 14 13 18 18 N 1.31618 * 120.00280 * 343.55088 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 163.54916 * 17 15 14 20 20 H 1.48505 * 109.46831 * 89.99983 * 19 17 15 21 21 H 1.48488 * 109.47321 * 210.00128 * 19 17 15 22 22 H 1.48505 * 109.47106 * 330.00414 * 19 17 15 23 23 C 1.47146 * 118.03715 * 50.54079 * 14 13 11 24 24 C 1.53295 * 108.38358 * 309.45919 * 23 14 13 25 25 O 1.42961 * 109.51365 * 65.25594 * 11 10 9 26 26 C 1.34812 * 125.83593 * 179.84069 * 2 1 3 27 27 O 1.21816 * 126.30020 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.46932 * 270.15076 * 1 2 3 29 29 H 1.08998 * 109.47428 * 30.15049 * 1 2 3 30 30 H 1.09000 * 109.46948 * 150.15444 * 1 2 3 31 31 H 1.07999 * 125.58537 * 0.07231 * 3 2 1 32 32 H 1.08996 * 109.47372 * 29.99450 * 6 5 4 33 33 H 1.09000 * 109.47070 * 149.99801 * 6 5 4 34 34 H 0.96996 * 119.99549 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46966 * 300.00371 * 10 9 7 36 36 H 1.09000 * 109.46910 * 60.00221 * 10 9 7 37 37 H 1.09001 * 109.46873 * 60.00095 * 12 11 10 38 38 H 1.09005 * 109.46889 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47263 * 300.00107 * 12 11 10 40 40 H 1.08994 * 109.68557 * 307.49973 * 13 11 10 41 41 H 1.09000 * 109.67668 * 68.01329 * 13 11 10 42 42 H 0.97003 * 119.99836 * 179.97438 * 18 17 15 43 43 H 1.08993 * 109.68696 * 69.18399 * 23 14 13 44 44 H 1.08996 * 109.68199 * 189.74036 * 23 14 13 45 45 H 1.08992 * 109.51604 * 172.22746 * 24 23 14 46 46 H 1.09000 * 109.51348 * 292.33085 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 -0.0064 5 7 3.5344 -0.6662 -0.0048 6 6 4.7314 -1.5109 -0.0099 7 6 5.1343 -1.8024 -1.4324 8 8 4.4859 -1.3489 -2.3515 9 7 6.2154 -2.5671 -1.6834 10 6 6.6068 -2.8510 -3.0663 11 6 7.8562 -3.7341 -3.0717 12 6 8.9589 -3.0643 -2.2493 13 6 8.3393 -3.9289 -4.5134 14 7 9.4211 -4.9265 -4.5096 15 6 10.6139 -4.6752 -5.1334 16 1 11.5149 -5.1638 -4.7931 17 6 10.6651 -3.7922 -6.2034 18 7 9.5578 -3.4478 -6.8260 19 14 12.3055 -3.0928 -6.7596 20 1 12.9006 -3.9841 -7.7877 21 1 12.0969 -1.7409 -7.3373 22 1 13.2232 -2.9977 -5.5959 23 6 9.1830 -6.2022 -3.8160 24 6 8.6588 -5.8967 -2.4083 25 8 7.5429 -5.0083 -2.5041 26 6 2.2543 -1.0929 0.0030 27 8 1.8806 -2.2523 0.0067 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3633 -0.8914 -0.5114 31 1 1.9249 2.1374 0.0011 32 1 5.5441 -0.9925 0.4990 33 1 4.5178 -2.4468 0.5063 34 1 6.7338 -2.9302 -0.9484 35 1 5.7938 -3.3692 -3.5749 36 1 6.8206 -1.9152 -3.5827 37 1 8.6153 -2.9278 -1.2239 38 1 9.8486 -3.6942 -2.2532 39 1 9.1983 -2.0941 -2.6845 40 1 7.5150 -4.2835 -5.1321 41 1 8.7126 -2.9832 -4.9063 42 1 9.5935 -2.8306 -7.5734 43 1 8.4437 -6.7858 -4.3644 44 1 10.1156 -6.7621 -3.7469 45 1 8.3461 -6.8233 -1.9271 46 1 9.4479 -5.4290 -1.8194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108038022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:22 Heat of formation + Delta-G solvation = 7.353587 kcal Electronic energy + Delta-G solvation = -30201.794734 eV Core-core repulsion = 25937.496575 eV Total energy + Delta-G solvation = -4264.298159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59366 -39.78667 -38.76075 -37.39151 -35.53178 -34.90060 -34.33695 -32.30280 -31.56345 -31.25630 -28.73174 -27.95723 -27.32354 -26.30190 -25.25567 -23.24379 -22.95732 -21.72231 -21.16628 -20.41658 -18.76594 -17.96660 -17.64012 -17.03584 -16.48602 -16.35519 -16.07352 -15.72859 -15.42328 -15.18161 -14.84577 -14.56246 -14.39446 -14.11358 -13.95712 -13.58168 -13.45248 -13.09980 -13.04083 -13.00266 -12.69069 -12.61756 -12.25555 -12.07402 -11.83948 -11.60193 -11.20278 -11.02776 -10.82968 -10.69462 -10.66760 -10.44530 -10.32759 -10.27356 -10.00861 -9.77050 -9.53979 -9.06123 -8.87368 -8.72643 -8.54927 -6.74413 -5.85579 -3.29408 1.46036 1.75267 2.50584 2.65220 2.85463 3.31894 3.36016 3.40530 3.41688 4.16815 4.24241 4.42676 4.46875 4.67703 4.73924 4.86438 4.92052 5.13412 5.13830 5.15924 5.33053 5.46690 5.50948 5.58657 5.65760 5.84553 5.91120 5.93219 6.00877 6.08829 6.13337 6.27901 6.29897 6.43511 6.55529 6.66349 6.74617 6.81914 7.06247 7.39336 7.45811 7.57615 7.69739 7.86382 7.87886 8.27551 8.32244 9.09706 9.72813 10.30279 11.22414 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.002406 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.228379 B =11636.156937 C =12284.817616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.562 5.562 3 C 0.254 3.746 4 N -0.272 5.272 5 N -0.436 5.436 6 C 0.143 3.857 7 C 0.493 3.507 8 O -0.531 6.531 9 N -0.713 5.713 10 C 0.141 3.859 11 C 0.078 3.922 12 C -0.161 4.161 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 C 0.652 3.348 27 O -0.551 6.551 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.096 0.904 42 H 0.256 0.744 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.363 8.690 17.849 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.291 5.291 3 C -0.046 4.046 4 N -0.093 5.093 5 N -0.256 5.256 6 C 0.018 3.982 7 C 0.276 3.724 8 O -0.407 6.407 9 N -0.366 5.366 10 C 0.018 3.982 11 C 0.037 3.963 12 C -0.219 4.219 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.303 6.303 26 C 0.351 3.649 27 O -0.424 6.424 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.238 0.762 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.256 8.482 17.063 23.212 hybrid contribution 0.599 0.059 -0.286 0.667 sum -12.656 8.541 16.776 22.684 Atomic orbital electron populations 1.21814 0.74161 1.04869 1.03366 1.45849 1.08855 1.06642 1.67801 1.25909 0.85776 0.94736 0.98141 1.76984 1.18277 0.91503 1.22513 1.48181 1.05478 1.03125 1.68836 1.21229 0.85754 0.95310 0.95932 1.20812 0.81018 0.79172 0.91370 1.90734 1.52697 1.51232 1.46003 1.45930 1.29083 1.51654 1.09966 1.21357 0.96368 0.98765 0.81755 1.22547 0.92723 0.83167 0.97861 1.22204 0.99939 1.01703 0.98050 1.21282 0.90700 0.96149 0.88533 1.43992 1.14093 1.10988 1.62340 1.19138 0.85253 1.24859 1.09120 0.91449 1.25059 0.96922 1.01814 0.95739 1.70012 1.26032 1.36547 1.21953 0.86298 0.83453 0.78516 0.78514 1.21326 1.21465 1.20458 1.21601 0.98646 0.89774 0.91744 1.23035 0.89247 0.92604 0.98297 1.87833 1.34362 1.24945 1.83181 1.16647 0.81926 0.85086 0.81195 1.91094 1.77609 1.15256 1.58469 0.90907 0.89301 0.89390 0.75275 0.85722 0.85748 0.76201 0.90824 0.89935 0.93935 0.90743 0.91823 0.95263 0.88579 0.93415 0.95653 0.92038 0.90170 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.05 59.85 0.66 1.19 16 2 N -0.56 -5.39 3.14 -130.10 -0.41 -5.79 16 3 C 0.25 1.94 12.66 -89.11 -1.13 0.81 16 4 N -0.27 -3.10 12.53 29.87 0.37 -2.73 16 5 N -0.44 -5.79 3.11 -66.31 -0.21 -5.99 16 6 C 0.14 1.63 6.87 -5.19 -0.04 1.60 16 7 C 0.49 7.52 7.90 -10.99 -0.09 7.43 16 8 O -0.53 -10.52 16.43 5.56 0.09 -10.42 16 9 N -0.71 -10.20 5.19 -60.29 -0.31 -10.51 16 10 C 0.14 2.46 4.85 -4.04 -0.02 2.44 16 11 C 0.08 1.45 0.78 -90.46 -0.07 1.38 16 12 C -0.16 -2.69 7.87 37.16 0.29 -2.39 16 13 C 0.16 3.74 4.10 -3.53 -0.01 3.72 16 14 N -0.59 -14.37 2.57 -171.84 -0.44 -14.81 16 15 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 18 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 19 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.11 2.23 6.73 -3.54 -0.02 2.21 16 24 C 0.05 0.79 6.60 37.31 0.25 1.04 16 25 O -0.38 -7.09 10.18 -35.23 -0.36 -7.45 16 26 C 0.65 9.28 8.60 -86.74 -0.75 8.54 16 27 O -0.55 -9.68 17.71 5.09 0.09 -9.59 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.23 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.21 8.11 -51.93 -0.42 0.79 16 34 H 0.40 4.74 6.98 -40.82 -0.29 4.45 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 38 H 0.07 1.36 6.12 -51.93 -0.32 1.04 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.47 6.16 -51.93 -0.32 2.15 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -38.36 379.28 -7.64 -46.00 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.62 Total: 3.42 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: -1.16 Total: 21.09 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.38 Total: -64.96 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.18 Total: -27.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.36 -7.64 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108038022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.355 kcal (2) G-P(sol) polarization free energy of solvation -38.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds