Wall clock time and date at job start Tue Mar 31 2020 23:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37364 * 125.83081 * 2 1 4 4 N 1.29404 * 108.82810 * 180.30124 * 3 2 1 5 5 N 1.40176 * 108.14081 * 359.73783 * 4 3 2 6 6 C 1.46501 * 126.34786 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.46681 * 269.99416 * 6 5 4 8 8 O 1.21281 * 120.00435 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00083 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00297 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.51028 * 305.09983 * 11 10 9 13 13 C 1.53298 * 109.51119 * 184.99954 * 11 10 9 14 14 N 1.47154 * 108.38080 * 187.77173 * 13 11 10 15 15 C 1.36939 * 120.98091 * 230.51501 * 14 13 11 16 16 H 1.07995 * 120.00510 * 153.32935 * 15 14 13 17 17 C 1.38818 * 119.99742 * 333.32691 * 15 14 13 18 18 N 1.31618 * 120.00280 * 343.55088 * 17 15 14 19 19 Si 1.86804 * 119.99826 * 163.54916 * 17 15 14 20 20 H 1.48505 * 109.46831 * 89.99983 * 19 17 15 21 21 H 1.48488 * 109.47321 * 210.00128 * 19 17 15 22 22 H 1.48505 * 109.47106 * 330.00414 * 19 17 15 23 23 C 1.47146 * 118.03715 * 50.54079 * 14 13 11 24 24 C 1.53295 * 108.38358 * 309.45919 * 23 14 13 25 25 O 1.42961 * 109.51365 * 65.25594 * 11 10 9 26 26 C 1.34812 * 125.83593 * 179.84069 * 2 1 3 27 27 O 1.21816 * 126.30020 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.46932 * 270.15076 * 1 2 3 29 29 H 1.08998 * 109.47428 * 30.15049 * 1 2 3 30 30 H 1.09000 * 109.46948 * 150.15444 * 1 2 3 31 31 H 1.07999 * 125.58537 * 0.07231 * 3 2 1 32 32 H 1.08996 * 109.47372 * 29.99450 * 6 5 4 33 33 H 1.09000 * 109.47070 * 149.99801 * 6 5 4 34 34 H 0.96996 * 119.99549 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46966 * 300.00371 * 10 9 7 36 36 H 1.09000 * 109.46910 * 60.00221 * 10 9 7 37 37 H 1.09001 * 109.46873 * 60.00095 * 12 11 10 38 38 H 1.09005 * 109.46889 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47263 * 300.00107 * 12 11 10 40 40 H 1.08994 * 109.68557 * 307.49973 * 13 11 10 41 41 H 1.09000 * 109.67668 * 68.01329 * 13 11 10 42 42 H 0.97003 * 119.99836 * 179.97438 * 18 17 15 43 43 H 1.08993 * 109.68696 * 69.18399 * 23 14 13 44 44 H 1.08996 * 109.68199 * 189.74036 * 23 14 13 45 45 H 1.08992 * 109.51604 * 172.22746 * 24 23 14 46 46 H 1.09000 * 109.51348 * 292.33085 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7353 -0.0064 5 7 3.5344 -0.6662 -0.0048 6 6 4.7314 -1.5109 -0.0099 7 6 5.1343 -1.8024 -1.4324 8 8 4.4859 -1.3489 -2.3515 9 7 6.2154 -2.5671 -1.6834 10 6 6.6068 -2.8510 -3.0663 11 6 7.8562 -3.7341 -3.0717 12 6 8.9589 -3.0643 -2.2493 13 6 8.3393 -3.9289 -4.5134 14 7 9.4211 -4.9265 -4.5096 15 6 10.6139 -4.6752 -5.1334 16 1 11.5149 -5.1638 -4.7931 17 6 10.6651 -3.7922 -6.2034 18 7 9.5578 -3.4478 -6.8260 19 14 12.3055 -3.0928 -6.7596 20 1 12.9006 -3.9841 -7.7877 21 1 12.0969 -1.7409 -7.3373 22 1 13.2232 -2.9977 -5.5959 23 6 9.1830 -6.2022 -3.8160 24 6 8.6588 -5.8967 -2.4083 25 8 7.5429 -5.0083 -2.5041 26 6 2.2543 -1.0929 0.0030 27 8 1.8806 -2.2523 0.0067 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5161 30 1 -0.3633 -0.8914 -0.5114 31 1 1.9249 2.1374 0.0011 32 1 5.5441 -0.9925 0.4990 33 1 4.5178 -2.4468 0.5063 34 1 6.7338 -2.9302 -0.9484 35 1 5.7938 -3.3692 -3.5749 36 1 6.8206 -1.9152 -3.5827 37 1 8.6153 -2.9278 -1.2239 38 1 9.8486 -3.6942 -2.2532 39 1 9.1983 -2.0941 -2.6845 40 1 7.5150 -4.2835 -5.1321 41 1 8.7126 -2.9832 -4.9063 42 1 9.5935 -2.8306 -7.5734 43 1 8.4437 -6.7858 -4.3644 44 1 10.1156 -6.7621 -3.7469 45 1 8.3461 -6.8233 -1.9271 46 1 9.4479 -5.4290 -1.8194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108038022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:21 Heat of formation + Delta-G solvation = -21.195675 kcal Electronic energy + Delta-G solvation = -30203.032722 eV Core-core repulsion = 25937.496575 eV Total energy + Delta-G solvation = -4265.536148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41092 -41.16992 -40.21241 -38.42576 -36.65241 -36.23202 -35.93166 -33.47043 -33.21532 -32.66003 -29.73680 -29.50166 -28.18684 -27.87208 -26.67402 -24.99778 -23.81336 -22.97184 -22.40592 -21.61981 -20.34026 -19.08479 -18.77412 -18.60015 -17.49289 -17.45383 -17.22570 -16.98501 -16.73406 -16.53302 -16.14418 -16.04157 -15.61226 -15.44995 -15.36747 -15.10451 -14.70124 -14.53685 -14.28314 -14.14569 -13.58224 -13.56356 -13.47505 -13.21631 -13.13173 -12.92362 -12.91147 -12.77712 -12.54308 -12.42629 -12.17753 -11.95815 -11.86152 -11.63286 -11.42990 -11.14247 -10.84833 -10.71953 -10.50436 -10.21437 -9.66046 -8.72306 -7.90320 -5.37822 0.65912 1.08971 1.45462 1.47021 1.47254 1.55108 1.56712 2.05594 2.32768 2.48015 2.77812 3.24530 3.46777 3.48420 3.63296 3.92335 4.00915 4.07500 4.09761 4.11845 4.14523 4.40068 4.42770 4.45989 4.53081 4.53849 4.61819 4.71058 4.78048 4.79280 4.88394 4.96566 5.00122 5.04122 5.11530 5.20243 5.29024 5.36774 5.52455 5.60864 5.67910 6.28821 6.36622 6.42900 6.60519 6.91812 7.05970 7.11534 7.75269 8.29765 9.15475 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.002406 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.228379 B =11636.156937 C =12284.817616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.310 5.310 5 N -0.446 5.446 6 C 0.145 3.855 7 C 0.491 3.509 8 O -0.582 6.582 9 N -0.698 5.698 10 C 0.152 3.848 11 C 0.094 3.906 12 C -0.153 4.153 13 C 0.168 3.832 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.075 0.925 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.968 3.032 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.265 1.265 23 C 0.101 3.899 24 C 0.053 3.947 25 O -0.387 6.387 26 C 0.630 3.370 27 O -0.600 6.600 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.290 0.710 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.056 0.944 40 H -0.012 1.012 41 H 0.067 0.933 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 10.028 20.879 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.131 5.131 5 N -0.265 5.265 6 C 0.020 3.980 7 C 0.277 3.723 8 O -0.462 6.462 9 N -0.352 5.352 10 C 0.027 3.973 11 C 0.053 3.947 12 C -0.210 4.210 13 C 0.041 3.959 14 N -0.331 5.331 15 C -0.388 4.388 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.584 5.584 19 Si 0.796 3.204 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.025 4.025 24 C -0.024 4.024 25 O -0.306 6.306 26 C 0.329 3.671 27 O -0.477 6.477 28 H 0.111 0.889 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.305 0.695 32 H 0.181 0.819 33 H 0.159 0.841 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.006 0.994 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.092 0.908 45 H 0.135 0.865 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.958 9.822 20.159 25.899 hybrid contribution 0.420 -0.383 -1.253 1.376 sum -12.538 9.439 18.906 24.571 Atomic orbital electron populations 1.22171 0.71802 1.05808 1.05055 1.46127 1.10239 1.05953 1.66393 1.27131 0.84441 0.96136 0.94272 1.76998 1.20432 0.90213 1.25482 1.48386 1.05439 1.04218 1.68458 1.21420 0.86756 0.96759 0.93024 1.21584 0.80082 0.77919 0.92695 1.90708 1.54253 1.53224 1.47996 1.45707 1.29214 1.51402 1.08884 1.20981 0.95091 0.97738 0.83511 1.22177 0.93643 0.83892 0.94974 1.22114 0.98449 1.00657 0.99784 1.21046 0.89172 0.94464 0.91253 1.44249 1.13622 1.12653 1.62530 1.19510 0.86327 1.24248 1.08746 0.90744 1.25837 0.99954 1.02643 0.96231 1.70192 1.28153 1.37453 1.22611 0.85274 0.79798 0.77148 0.78222 1.21344 1.22123 1.18946 1.21830 0.99076 0.88199 0.93350 1.23113 0.89329 0.93945 0.96058 1.87843 1.35268 1.24914 1.82606 1.17086 0.82905 0.85534 0.81570 1.91033 1.78543 1.17370 1.60797 0.88905 0.85233 0.91546 0.69507 0.81866 0.84104 0.74278 0.93360 0.91044 0.89842 0.91880 0.92483 0.99377 0.91446 0.94096 0.97264 0.90830 0.86549 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.05 127.77 1.41 2.18 16 2 N -0.56 -9.71 3.14 -683.68 -2.15 -11.86 16 3 C 0.28 3.39 12.66 179.82 2.28 5.66 16 4 N -0.31 -6.46 12.53 -59.41 -0.74 -7.21 16 5 N -0.45 -11.40 3.11 -481.78 -1.50 -12.90 16 6 C 0.15 3.10 6.87 85.63 0.59 3.69 16 7 C 0.49 14.82 7.90 87.66 0.69 15.52 16 8 O -0.58 -23.70 16.43 -3.03 -0.05 -23.75 16 9 N -0.70 -19.34 5.19 -463.06 -2.41 -21.75 16 10 C 0.15 5.45 4.85 86.38 0.42 5.87 16 11 C 0.09 3.50 0.78 -10.69 -0.01 3.49 16 12 C -0.15 -4.82 7.87 71.98 0.57 -4.25 16 13 C 0.17 8.18 4.10 86.35 0.35 8.54 16 14 N -0.61 -29.99 2.57 -697.57 -1.79 -31.78 16 15 C -0.26 -13.82 9.65 84.03 0.81 -13.01 16 16 H 0.07 3.81 7.88 -2.91 -0.02 3.78 16 17 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 18 N -0.94 -55.84 11.14 21.65 0.24 -55.60 16 19 Si 0.97 44.23 29.58 68.60 2.03 46.26 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.10 4.09 6.73 86.35 0.58 4.67 16 24 C 0.05 1.69 6.60 72.08 0.48 2.16 16 25 O -0.39 -13.78 10.18 -148.98 -1.52 -15.29 16 26 C 0.63 17.78 8.60 178.99 1.54 19.32 16 27 O -0.60 -21.66 17.71 -4.72 -0.08 -21.75 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.29 -0.53 8.06 -2.91 -0.02 -0.55 16 32 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.14 2.52 8.11 -2.39 -0.02 2.50 16 34 H 0.42 8.75 6.98 -92.71 -0.65 8.10 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 1.94 6.57 -2.39 -0.02 1.92 16 38 H 0.06 2.17 6.12 -2.38 -0.01 2.15 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.07 3.67 6.16 -2.39 -0.01 3.65 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 2.77 7.96 -2.39 -0.02 2.75 16 45 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.06 1.90 6.26 -2.39 -0.01 1.89 16 Total: -1.00 -90.20 379.28 2.52 -87.67 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.36 Total: 16.53 kcal Atomic # 6 Polarization: 41.29 SS G_CDS: 10.13 Total: 51.42 kcal Atomic # 7 Polarization: -132.75 SS G_CDS: -8.35 Total: -141.09 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.65 Total: -60.79 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -90.20 2.52 -87.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108038022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.476 kcal (2) G-P(sol) polarization free energy of solvation -90.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds