Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38832 * 119.06965 * 2 1 4 4 C 1.38583 * 119.68786 * 180.02562 * 3 2 1 5 5 N 1.38651 * 121.05406 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99918 * 64.32691 * 5 4 3 7 7 C 1.53238 * 109.33904 * 172.75012 * 6 5 4 8 8 N 1.47076 * 108.52665 * 53.82589 * 7 6 5 9 9 C 1.34774 * 120.88571 * 128.83775 * 8 7 6 10 10 O 1.21278 * 120.00184 * 179.97438 * 9 8 7 11 11 C 1.50708 * 119.99432 * 359.97438 * 9 8 7 12 12 C 1.50705 * 109.46602 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00142 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99557 * 180.02562 * 12 11 9 15 15 N 1.31511 * 119.99849 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99663 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46783 * 60.00342 * 16 14 12 18 18 H 1.48498 * 109.46694 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47357 * 300.00017 * 16 14 12 20 20 C 1.47080 * 118.23721 * 308.82174 * 8 7 6 21 21 C 1.46903 * 110.99785 * 300.02137 * 5 4 3 22 22 C 1.41570 * 117.89175 * 0.02562 * 4 3 2 23 23 C 1.40160 * 121.35619 * 180.02562 * 22 4 3 24 24 C 1.36257 * 119.63015 * 180.02562 * 23 22 4 25 25 C 1.39267 * 120.80959 * 359.96228 * 24 23 22 26 26 C 1.36135 * 121.03449 * 0.02562 * 25 24 23 27 27 C 1.40554 * 119.75796 * 0.02562 * 26 25 24 28 28 N 1.31263 * 119.06694 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46995 * 89.99938 * 1 2 3 30 30 H 1.09004 * 109.47440 * 209.99913 * 1 2 3 31 31 H 1.09000 * 109.47280 * 330.00040 * 1 2 3 32 32 H 1.07998 * 120.15636 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.49067 * 292.70587 * 6 5 4 34 34 H 1.08999 * 109.49419 * 52.78665 * 6 5 4 35 35 H 1.09005 * 109.62764 * 294.11873 * 7 6 5 36 36 H 1.08997 * 109.63191 * 173.53988 * 7 6 5 37 37 H 1.08999 * 109.47209 * 299.99718 * 11 9 8 38 38 H 1.08996 * 109.46922 * 60.00258 * 11 9 8 39 39 H 0.97002 * 119.99342 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.62616 * 291.46839 * 20 8 7 41 41 H 1.09001 * 109.62971 * 170.89124 * 20 8 7 42 42 H 1.08997 * 109.49535 * 307.21594 * 21 5 4 43 43 H 1.08998 * 109.49346 * 67.26994 * 21 5 4 44 44 H 1.08008 * 120.18657 * 359.96209 * 23 22 4 45 45 H 1.08003 * 119.59523 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.47932 * 180.29474 * 25 24 23 47 47 H 1.07999 * 120.11771 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.2134 0.0000 4 6 3.5673 1.2284 -0.0005 5 7 4.2697 2.4238 -0.0011 6 6 4.0245 3.1790 1.2348 7 6 4.9519 4.3982 1.2770 8 7 4.7733 5.1643 0.0343 9 6 4.5293 6.4894 0.0675 10 8 4.3851 7.1055 -0.9671 11 6 4.4358 7.2053 1.3903 12 6 4.1579 8.6672 1.1517 13 1 4.0594 9.0405 0.1431 14 6 4.0306 9.5282 2.2211 15 7 4.1521 9.0738 3.4492 16 14 3.6869 11.3403 1.9252 17 1 2.4043 11.4875 1.1914 18 1 3.5959 12.0460 3.2287 19 1 4.7879 11.9281 1.1206 20 6 4.8683 4.4461 -1.2457 21 6 3.9442 3.2250 -1.1886 22 6 4.2430 -0.0156 -0.0016 23 6 5.6429 -0.0852 -0.0017 24 6 6.2569 -1.3016 -0.0033 25 6 5.5105 -2.4774 -0.0041 26 6 4.1496 -2.4448 -0.0038 27 6 3.4814 -1.2083 -0.0032 28 7 2.1447 -1.1473 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6290 2.1413 -0.0004 33 1 2.9865 3.5106 1.2586 34 1 4.2229 2.5411 2.0962 35 1 5.9875 4.0679 1.3578 36 1 4.6962 5.0233 2.1325 37 1 3.6274 6.7739 1.9806 38 1 5.3770 7.0972 1.9293 39 1 4.0628 9.6797 4.2014 40 1 5.8959 4.1204 -1.4074 41 1 4.5573 5.1030 -2.0581 42 1 4.0843 2.6206 -2.0848 43 1 2.9072 3.5556 -1.1313 44 1 6.2317 0.8203 -0.0015 45 1 7.3356 -1.3546 -0.0038 46 1 6.0194 -3.4299 -0.0005 47 1 3.5855 -3.3658 -0.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = 31.515339 kcal Electronic energy + Delta-G solvation = -28947.538345 eV Core-core repulsion = 25095.137181 eV Total energy + Delta-G solvation = -3852.401164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35530 -39.65236 -38.00836 -37.35060 -34.83690 -33.04233 -32.29975 -32.00148 -31.31629 -29.94322 -28.88092 -28.00103 -26.79126 -24.24339 -23.86304 -23.14117 -22.72281 -21.72469 -20.65927 -18.64931 -18.20455 -17.58275 -16.95356 -16.45509 -15.78439 -15.55835 -15.27861 -15.05970 -14.97062 -14.88823 -14.67916 -14.36954 -14.27911 -13.97992 -13.63389 -13.29111 -13.25136 -12.90116 -12.70949 -12.52048 -12.43960 -12.10459 -11.79339 -11.61197 -11.56552 -11.46565 -11.36427 -11.26332 -11.19286 -10.81678 -10.64528 -10.36066 -9.98871 -9.74451 -9.28097 -8.92844 -8.90097 -8.70090 -8.47150 -8.32917 -8.16709 -6.09792 -4.09414 0.13297 0.60936 1.74488 2.67875 3.25129 3.34772 3.37129 3.42506 3.57007 3.65648 3.86516 3.94510 4.44396 4.45078 4.52939 4.61296 4.69419 4.89656 4.91973 4.93792 5.10023 5.10770 5.13306 5.18585 5.28297 5.28946 5.32734 5.34144 5.44014 5.48202 5.65741 5.66410 5.71373 5.75710 5.83959 5.88445 5.92361 6.06407 6.14964 6.19236 6.24193 6.31093 6.60523 6.64667 6.91164 6.99504 7.12982 7.25553 7.74506 7.89689 7.93272 8.31160 9.00607 9.12168 9.55802 11.02484 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002476 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.424515 B =11304.180051 C =11856.027752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.211 4.211 4 C 0.169 3.831 5 N -0.505 5.505 6 C 0.047 3.953 7 C 0.118 3.882 8 N -0.632 5.632 9 C 0.518 3.482 10 O -0.543 6.543 11 C 0.009 3.991 12 C -0.510 4.510 13 H 0.074 0.926 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.117 3.883 21 C 0.049 3.951 22 C -0.094 4.094 23 C -0.067 4.067 24 C -0.133 4.133 25 C -0.094 4.094 26 C -0.106 4.106 27 C 0.140 3.860 28 N -0.486 5.486 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.140 0.860 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -24.365 -4.967 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.019 3.981 3 C -0.233 4.233 4 C 0.067 3.933 5 N -0.226 5.226 6 C -0.080 4.080 7 C -0.006 4.006 8 N -0.369 5.369 9 C 0.310 3.690 10 O -0.419 6.419 11 C -0.030 4.030 12 C -0.548 4.548 13 H 0.092 0.908 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.006 4.006 21 C -0.078 4.078 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.124 4.124 27 C 0.018 3.982 28 N -0.196 5.196 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.158 0.842 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.174 -24.840 -5.355 25.411 hybrid contribution -0.526 1.775 0.061 1.853 sum -0.701 -23.065 -5.293 23.675 Atomic orbital electron populations 1.20797 0.88634 1.03729 1.03320 1.21251 0.97027 0.87751 0.92096 1.22546 0.95299 0.99803 1.05668 1.19062 0.90055 0.90915 0.93308 1.59211 1.56381 1.03035 1.04017 1.22651 0.99459 0.95179 0.90706 1.21741 0.99069 0.91484 0.88333 1.48466 1.74019 1.08594 1.05819 1.22089 0.73040 0.79736 0.94101 1.90529 1.49547 1.65437 1.36402 1.19237 0.99207 0.96114 0.88483 1.21131 1.48307 0.91461 0.93948 0.90793 1.24998 0.95265 0.99289 0.94961 1.69938 1.50463 1.35629 0.97996 0.86485 0.79085 0.84319 0.77151 1.20131 1.21329 1.20094 1.21495 0.98942 0.91750 0.88442 1.22616 0.98869 0.94567 0.91753 1.18714 0.95054 0.92104 1.03793 1.21054 0.92838 0.98673 0.95989 1.20967 1.00375 0.92334 1.01446 1.20917 0.93710 0.98732 0.98056 1.20716 0.94146 0.96156 1.01424 1.18811 0.88926 0.92803 0.97639 1.67882 1.08534 1.28539 1.14642 0.90123 0.90240 0.90456 0.84712 0.93251 0.89449 0.91062 0.87768 0.93581 0.93421 0.92806 0.91454 0.88621 0.89798 0.93483 0.84234 0.85585 0.85494 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.14 36.01 0.37 -0.50 16 2 C 0.17 1.90 6.77 -82.62 -0.56 1.34 16 3 C -0.21 -2.36 8.41 -39.23 -0.33 -2.69 16 4 C 0.17 1.99 4.67 -83.38 -0.39 1.60 16 5 N -0.50 -5.87 3.81 -170.39 -0.65 -6.52 16 6 C 0.05 0.56 5.31 -3.70 -0.02 0.54 16 7 C 0.12 1.63 6.50 -3.60 -0.02 1.61 16 8 N -0.63 -10.74 3.01 -172.46 -0.52 -11.26 16 9 C 0.52 11.57 7.70 -10.98 -0.08 11.48 16 10 O -0.54 -13.90 14.91 5.56 0.08 -13.81 16 11 C 0.01 0.21 3.83 -29.03 -0.11 0.10 16 12 C -0.51 -14.59 8.92 -34.44 -0.31 -14.89 16 13 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.12 1.67 6.60 -3.60 -0.02 1.65 16 21 C 0.05 0.59 5.25 -3.70 -0.02 0.57 16 22 C -0.09 -1.11 5.75 -106.66 -0.61 -1.72 16 23 C -0.07 -0.68 9.56 -39.57 -0.38 -1.06 16 24 C -0.13 -1.13 9.96 -39.91 -0.40 -1.53 16 25 C -0.09 -0.77 9.94 -39.96 -0.40 -1.17 16 26 C -0.11 -1.05 9.98 -39.47 -0.39 -1.44 16 27 C 0.14 1.70 6.60 -84.89 -0.56 1.14 16 28 N -0.49 -6.07 10.22 -7.34 -0.08 -6.14 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.14 1.40 7.29 -52.49 -0.38 1.02 16 33 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 34 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.56 6.02 -51.93 -0.31 1.25 16 37 H 0.05 1.15 7.66 -51.93 -0.40 0.75 16 38 H 0.05 1.19 8.00 -51.93 -0.42 0.78 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 1.51 7.06 -51.93 -0.37 1.14 16 42 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.05 0.60 7.45 -51.93 -0.39 0.21 16 44 H 0.14 1.38 7.60 -52.48 -0.40 0.98 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -33.08 382.27 -10.79 -43.87 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.77 Total: -0.14 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -4.34 Total: -3.49 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.51 Total: -49.07 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.08 -10.79 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.385 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds