Wall clock time and date at job start Tue Mar 31 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38832 * 119.06965 * 2 1 4 4 C 1.38583 * 119.68786 * 180.02562 * 3 2 1 5 5 N 1.38651 * 121.05406 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99918 * 64.32691 * 5 4 3 7 7 C 1.53238 * 109.33904 * 172.75012 * 6 5 4 8 8 N 1.47076 * 108.52665 * 53.82589 * 7 6 5 9 9 C 1.34774 * 120.88571 * 128.83775 * 8 7 6 10 10 O 1.21278 * 120.00184 * 179.97438 * 9 8 7 11 11 C 1.50708 * 119.99432 * 359.97438 * 9 8 7 12 12 C 1.50705 * 109.46602 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00142 * 359.97438 * 12 11 9 14 14 C 1.37883 * 119.99557 * 180.02562 * 12 11 9 15 15 N 1.31511 * 119.99849 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99663 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46783 * 60.00342 * 16 14 12 18 18 H 1.48498 * 109.46694 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47357 * 300.00017 * 16 14 12 20 20 C 1.47080 * 118.23721 * 308.82174 * 8 7 6 21 21 C 1.46903 * 110.99785 * 300.02137 * 5 4 3 22 22 C 1.41570 * 117.89175 * 0.02562 * 4 3 2 23 23 C 1.40160 * 121.35619 * 180.02562 * 22 4 3 24 24 C 1.36257 * 119.63015 * 180.02562 * 23 22 4 25 25 C 1.39267 * 120.80959 * 359.96228 * 24 23 22 26 26 C 1.36135 * 121.03449 * 0.02562 * 25 24 23 27 27 C 1.40554 * 119.75796 * 0.02562 * 26 25 24 28 28 N 1.31263 * 119.06694 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46995 * 89.99938 * 1 2 3 30 30 H 1.09004 * 109.47440 * 209.99913 * 1 2 3 31 31 H 1.09000 * 109.47280 * 330.00040 * 1 2 3 32 32 H 1.07998 * 120.15636 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.49067 * 292.70587 * 6 5 4 34 34 H 1.08999 * 109.49419 * 52.78665 * 6 5 4 35 35 H 1.09005 * 109.62764 * 294.11873 * 7 6 5 36 36 H 1.08997 * 109.63191 * 173.53988 * 7 6 5 37 37 H 1.08999 * 109.47209 * 299.99718 * 11 9 8 38 38 H 1.08996 * 109.46922 * 60.00258 * 11 9 8 39 39 H 0.97002 * 119.99342 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.62616 * 291.46839 * 20 8 7 41 41 H 1.09001 * 109.62971 * 170.89124 * 20 8 7 42 42 H 1.08997 * 109.49535 * 307.21594 * 21 5 4 43 43 H 1.08998 * 109.49346 * 67.26994 * 21 5 4 44 44 H 1.08008 * 120.18657 * 359.96209 * 23 22 4 45 45 H 1.08003 * 119.59523 * 179.97438 * 24 23 22 46 46 H 1.07995 * 119.47932 * 180.29474 * 25 24 23 47 47 H 1.07999 * 120.11771 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.2134 0.0000 4 6 3.5673 1.2284 -0.0005 5 7 4.2697 2.4238 -0.0011 6 6 4.0245 3.1790 1.2348 7 6 4.9519 4.3982 1.2770 8 7 4.7733 5.1643 0.0343 9 6 4.5293 6.4894 0.0675 10 8 4.3851 7.1055 -0.9671 11 6 4.4358 7.2053 1.3903 12 6 4.1579 8.6672 1.1517 13 1 4.0594 9.0405 0.1431 14 6 4.0306 9.5282 2.2211 15 7 4.1521 9.0738 3.4492 16 14 3.6869 11.3403 1.9252 17 1 2.4043 11.4875 1.1914 18 1 3.5959 12.0460 3.2287 19 1 4.7879 11.9281 1.1206 20 6 4.8683 4.4461 -1.2457 21 6 3.9442 3.2250 -1.1886 22 6 4.2430 -0.0156 -0.0016 23 6 5.6429 -0.0852 -0.0017 24 6 6.2569 -1.3016 -0.0033 25 6 5.5105 -2.4774 -0.0041 26 6 4.1496 -2.4448 -0.0038 27 6 3.4814 -1.2083 -0.0032 28 7 2.1447 -1.1473 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6290 2.1413 -0.0004 33 1 2.9865 3.5106 1.2586 34 1 4.2229 2.5411 2.0962 35 1 5.9875 4.0679 1.3578 36 1 4.6962 5.0233 2.1325 37 1 3.6274 6.7739 1.9806 38 1 5.3770 7.0972 1.9293 39 1 4.0628 9.6797 4.2014 40 1 5.8959 4.1204 -1.4074 41 1 4.5573 5.1030 -2.0581 42 1 4.0843 2.6206 -2.0848 43 1 2.9072 3.5556 -1.1313 44 1 6.2317 0.8203 -0.0015 45 1 7.3356 -1.3546 -0.0038 46 1 6.0194 -3.4299 -0.0005 47 1 3.5855 -3.3658 -0.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:43 Heat of formation + Delta-G solvation = 12.270967 kcal Electronic energy + Delta-G solvation = -28948.372843 eV Core-core repulsion = 25095.137181 eV Total energy + Delta-G solvation = -3853.235662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21102 -40.97914 -39.28858 -38.16859 -36.15113 -35.15423 -33.14534 -32.88990 -32.47818 -31.01711 -30.52767 -28.71733 -28.02811 -25.87540 -24.77379 -24.51782 -23.45310 -22.80913 -21.75841 -19.96927 -19.01804 -18.66686 -18.34401 -17.96666 -17.22727 -16.94393 -16.46151 -16.40588 -16.17566 -15.90155 -15.77730 -15.51336 -15.18031 -14.99560 -14.61588 -14.45101 -14.18832 -14.13267 -13.92966 -13.89376 -13.52264 -13.20216 -13.14762 -12.83208 -12.67926 -12.56779 -12.47397 -12.45238 -12.39359 -12.30202 -12.23473 -12.00830 -11.42492 -11.19577 -10.63195 -10.59501 -10.50297 -9.98200 -9.66220 -9.51123 -9.10003 -8.26058 -6.33176 -0.66041 -0.16844 0.95534 1.39790 1.42076 1.50689 1.81798 1.93965 2.02059 2.41082 2.49905 3.08344 3.09332 3.22174 3.59412 3.72814 3.74803 3.82870 3.90639 4.02995 4.07301 4.13276 4.17512 4.24903 4.34031 4.41988 4.45176 4.47598 4.58969 4.62889 4.72785 4.73975 4.75322 4.79629 4.88680 4.98085 5.02477 5.05982 5.13296 5.20379 5.24083 5.45260 5.47730 5.52089 5.59045 5.63852 5.74884 5.94988 6.02119 6.09846 6.49648 6.79375 6.92708 7.31989 7.42614 8.85627 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002476 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.424515 B =11304.180051 C =11856.027752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 C -0.216 4.216 4 C 0.160 3.840 5 N -0.496 5.496 6 C 0.055 3.945 7 C 0.115 3.885 8 N -0.621 5.621 9 C 0.519 3.481 10 O -0.584 6.584 11 C 0.016 3.984 12 C -0.539 4.539 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.922 5.922 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.118 3.882 21 C 0.059 3.941 22 C -0.107 4.107 23 C -0.081 4.081 24 C -0.125 4.125 25 C -0.085 4.085 26 C -0.120 4.120 27 C 0.117 3.883 28 N -0.504 5.504 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.268 0.732 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.101 0.899 43 H 0.038 0.962 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.160 0.840 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -26.007 -4.941 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.238 4.238 4 C 0.057 3.943 5 N -0.218 5.218 6 C -0.072 4.072 7 C -0.007 4.007 8 N -0.356 5.356 9 C 0.311 3.689 10 O -0.464 6.464 11 C -0.023 4.023 12 C -0.578 4.578 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.561 5.561 16 Si 0.786 3.214 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.005 4.005 21 C -0.068 4.068 22 C -0.110 4.110 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.005 4.005 28 N -0.215 5.215 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.057 0.943 44 H 0.160 0.840 45 H 0.171 0.829 46 H 0.177 0.823 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.621 -26.545 -5.311 27.078 hybrid contribution -0.705 2.130 0.071 2.245 sum -0.084 -24.415 -5.239 24.971 Atomic orbital electron populations 1.20850 0.86802 1.04367 1.04143 1.21669 0.98352 0.87459 0.91771 1.22625 0.95317 1.00077 1.05759 1.19082 0.90279 0.90757 0.94157 1.59166 1.56311 1.02838 1.03455 1.22547 0.98343 0.94541 0.91732 1.21918 1.00839 0.91567 0.86400 1.48343 1.71846 1.07172 1.08197 1.21554 0.73440 0.81462 0.92474 1.90502 1.51879 1.66960 1.37054 1.19022 0.98481 0.94916 0.89901 1.21351 1.49399 0.93748 0.93262 0.92863 1.25748 0.94758 1.03429 0.94689 1.70008 1.50494 1.37096 0.98548 0.85555 0.78898 0.79329 0.77589 1.19833 1.19837 1.19808 1.21654 1.00639 0.91878 0.86313 1.22496 0.97665 0.93806 0.92846 1.18861 0.95898 0.91916 1.04326 1.21163 0.92200 0.99648 0.96989 1.21336 1.01836 0.91723 0.99426 1.21301 0.93075 1.00115 0.95923 1.20958 0.95134 0.95793 1.02018 1.19193 0.89072 0.93834 0.98381 1.67919 1.09063 1.29147 1.15323 0.89113 0.90042 0.89341 0.84371 0.94106 0.87785 0.88944 0.89034 0.94133 0.94022 0.92346 0.89484 0.90220 0.88031 0.94320 0.84042 0.82881 0.82279 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 10.14 71.24 0.72 -0.87 16 2 C 0.16 3.47 6.77 42.79 0.29 3.76 16 3 C -0.22 -4.72 8.41 22.49 0.19 -4.53 16 4 C 0.16 3.59 4.67 38.97 0.18 3.77 16 5 N -0.50 -10.87 3.81 -692.98 -2.64 -13.51 16 6 C 0.06 1.26 5.31 86.38 0.46 1.72 16 7 C 0.12 3.12 6.50 86.35 0.56 3.68 16 8 N -0.62 -21.05 3.01 -817.93 -2.46 -23.51 16 9 C 0.52 23.77 7.70 87.66 0.68 24.45 16 10 O -0.58 -30.86 14.91 -3.02 -0.05 -30.91 16 11 C 0.02 0.82 3.83 29.11 0.11 0.93 16 12 C -0.54 -31.66 8.92 25.60 0.23 -31.43 16 13 H 0.05 3.30 6.75 -2.91 -0.02 3.28 16 14 C 0.01 0.72 5.46 84.66 0.46 1.19 16 15 N -0.92 -53.21 13.29 21.45 0.28 -52.92 16 16 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.12 3.28 6.60 86.35 0.57 3.85 16 21 C 0.06 1.35 5.25 86.38 0.45 1.80 16 22 C -0.11 -2.40 5.75 -21.18 -0.12 -2.52 16 23 C -0.08 -1.49 9.56 22.27 0.21 -1.28 16 24 C -0.13 -1.75 9.96 22.06 0.22 -1.53 16 25 C -0.08 -1.12 9.94 22.03 0.22 -0.90 16 26 C -0.12 -2.18 9.98 22.34 0.22 -1.96 16 27 C 0.12 2.73 6.60 40.21 0.27 2.99 16 28 N -0.50 -12.35 10.22 -177.12 -1.81 -14.16 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.12 8.07 -2.39 -0.02 1.11 16 32 H 0.14 2.83 7.29 -2.91 -0.02 2.81 16 33 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 34 H 0.10 2.09 8.09 -2.39 -0.02 2.07 16 35 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.09 2.75 6.02 -2.39 -0.01 2.74 16 37 H 0.04 2.08 7.66 -2.39 -0.02 2.07 16 38 H 0.04 2.14 8.00 -2.39 -0.02 2.13 16 39 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.08 2.53 7.06 -2.39 -0.02 2.51 16 42 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 43 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 44 H 0.14 2.48 7.60 -2.91 -0.02 2.46 16 45 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 46 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.33 382.27 2.25 -70.08 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.98 Total: 14.74 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.92 Total: 3.13 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -6.63 Total: -104.10 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.33 2.25 -70.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.350 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds