Wall clock time and date at job start Tue Mar 31 2020 22:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31488 * 119.81533 * 2 1 4 4 C 1.32741 * 121.73458 * 180.26691 * 3 2 1 5 5 N 1.38374 * 119.43179 * 179.75077 * 4 3 2 6 6 C 1.46951 * 110.99724 * 359.72794 * 5 4 3 7 7 C 1.53052 * 109.37887 * 176.82564 * 6 5 4 8 8 N 1.46954 * 109.36639 * 58.38731 * 7 6 5 9 9 C 1.39949 * 111.00018 * 176.81374 * 8 7 6 10 10 C 1.38858 * 120.01639 * 359.72675 * 9 8 7 11 11 C 1.38116 * 119.97666 * 179.72300 * 10 9 8 12 12 C 1.38696 * 120.01471 * 0.57281 * 11 10 9 13 13 O 1.36004 * 119.97443 * 179.70272 * 12 11 10 14 14 C 1.38693 * 120.04604 * 359.67788 * 12 11 10 15 15 C 1.38114 * 120.01437 * 0.04430 * 14 12 11 16 16 C 1.46951 * 110.87987 * 300.67792 * 8 7 6 17 17 C 1.46956 * 111.01573 * 235.91375 * 5 4 3 18 18 C 1.39709 * 121.13478 * 359.46915 * 4 3 2 19 19 C 1.36561 * 119.49310 * 0.26091 * 18 4 3 20 20 C 1.40752 * 119.82183 * 179.74292 * 2 1 3 21 21 C 1.41204 * 120.56748 * 359.97438 * 20 2 1 22 22 H 1.08001 * 119.99943 * 334.75184 * 21 20 2 23 23 C 1.39865 * 120.00012 * 154.75170 * 21 20 2 24 24 N 1.30898 * 120.00112 * 343.67443 * 23 21 20 25 25 Si 1.86801 * 119.99927 * 163.67660 * 23 21 20 26 26 H 1.48501 * 109.47084 * 60.00149 * 25 23 21 27 27 H 1.48502 * 109.47277 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47438 * 300.00166 * 25 23 21 29 29 H 1.08997 * 109.47143 * 270.25352 * 1 2 3 30 30 H 1.09002 * 109.47119 * 30.25839 * 1 2 3 31 31 H 1.09008 * 109.46591 * 150.25613 * 1 2 3 32 32 H 1.09000 * 109.49645 * 56.84548 * 6 5 4 33 33 H 1.09002 * 109.49100 * 296.79726 * 6 5 4 34 34 H 1.09004 * 109.48846 * 178.35736 * 7 6 5 35 35 H 1.09005 * 109.48893 * 298.41764 * 7 6 5 36 36 H 1.08005 * 120.01019 * 359.97141 * 10 9 8 37 37 H 1.08006 * 119.98665 * 180.27511 * 11 10 9 38 38 H 0.96700 * 114.00022 * 269.97752 * 13 12 11 39 39 H 1.07992 * 119.99458 * 180.02562 * 14 12 11 40 40 H 1.08004 * 120.00934 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.49270 * 179.28767 * 16 8 7 42 42 H 1.09004 * 109.49378 * 299.35582 * 16 8 7 43 43 H 1.09005 * 109.47180 * 63.19817 * 17 5 4 44 44 H 1.08997 * 109.50717 * 303.15894 * 17 5 4 45 45 H 1.08003 * 120.25203 * 180.22977 * 18 4 3 46 46 H 1.08006 * 120.78920 * 179.97438 * 19 18 4 47 47 H 0.97002 * 120.00069 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4874 1.1853 -0.0053 5 7 4.1266 2.4125 -0.0102 6 6 3.1530 3.5133 -0.0152 7 6 3.8964 4.8491 0.0593 8 7 4.8170 4.9588 -1.0809 9 6 5.4631 6.2002 -1.0862 10 6 5.1859 7.1318 -0.0945 11 6 5.8283 8.3545 -0.0973 12 6 6.7411 8.6563 -1.0970 13 8 7.3687 9.8629 -1.1023 14 6 7.0147 7.7285 -2.0908 15 6 6.3775 6.5031 -2.0863 16 6 5.7908 3.8583 -1.0756 17 6 5.0475 2.5225 -1.1502 18 6 4.2495 0.0143 0.0000 19 6 3.6199 -1.1975 0.0054 20 6 2.2070 -1.2211 0.0055 21 6 1.5093 -2.4487 0.0115 22 1 0.5071 -2.4983 0.4111 23 6 2.1160 -3.6005 -0.4999 24 7 3.1748 -3.4987 -1.2628 25 14 1.4153 -5.2839 -0.0944 26 1 0.0157 -5.3684 -0.5834 27 1 2.2337 -6.3328 -0.7541 28 1 1.4390 -5.4889 1.3762 29 1 -0.3633 0.0045 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8924 -0.5099 32 1 2.4908 3.4171 0.8452 33 1 2.5654 3.4749 -0.9324 34 1 3.1774 5.6677 0.0264 35 1 4.4623 4.8990 0.9897 36 1 4.4712 6.8988 0.6810 37 1 5.6161 9.0775 0.6765 38 1 6.8991 10.5483 -1.5972 39 1 7.7259 7.9642 -2.8685 40 1 6.5903 5.7807 -2.8605 41 1 6.4530 3.9545 -1.9360 42 1 6.3782 3.8968 -0.1581 43 1 4.4816 2.4726 -2.0805 44 1 5.7664 1.7039 -1.1176 45 1 5.3282 0.0672 -0.0006 46 1 4.1884 -2.1158 0.0091 47 1 3.5958 -4.2975 -1.6173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163817928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:23 Heat of formation + Delta-G solvation = 19.842583 kcal Electronic energy + Delta-G solvation = -28502.267302 eV Core-core repulsion = 24649.359970 eV Total energy + Delta-G solvation = -3852.907332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65508 -40.72840 -39.49919 -37.84762 -36.15616 -35.24042 -33.29893 -32.67675 -32.17774 -31.44468 -29.94561 -28.72361 -27.40383 -25.77684 -25.28555 -23.26236 -23.16892 -22.45943 -21.81553 -20.87737 -19.31534 -19.17308 -18.57521 -17.58917 -17.09223 -16.89427 -16.54783 -16.33055 -15.85859 -15.78043 -15.70549 -15.27818 -15.14464 -14.84572 -14.54862 -14.45473 -14.39448 -13.78652 -13.61574 -13.56377 -13.31038 -13.14050 -12.98039 -12.94157 -12.79205 -12.71887 -12.63138 -12.34538 -12.21415 -12.06784 -11.98120 -11.64274 -11.31275 -11.19025 -10.63072 -10.29912 -10.08459 -9.96201 -9.89451 -8.88179 -8.71117 -8.60558 -6.28194 0.28559 0.38970 0.75687 1.04891 1.40300 1.50174 1.53734 2.19713 2.50933 2.64261 2.82144 2.97014 3.40671 3.64297 3.74180 3.83018 3.92779 4.02249 4.08276 4.19351 4.29822 4.32199 4.40261 4.51010 4.54455 4.55293 4.62041 4.66273 4.73736 4.76451 4.85955 4.95754 4.98201 5.01897 5.05193 5.08467 5.14833 5.20319 5.24682 5.28914 5.48055 5.50345 5.55375 5.69628 5.74950 5.92391 5.96381 6.19367 6.23351 6.34986 6.61851 6.81937 6.90719 6.92541 7.72202 8.29034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.002090 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.264606 B =13392.404697 C =13948.860706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.002 4.002 3 N -0.500 5.500 4 C 0.169 3.831 5 N -0.469 5.469 6 C 0.082 3.918 7 C 0.062 3.938 8 N -0.499 5.499 9 C 0.094 3.906 10 C -0.160 4.160 11 C -0.123 4.123 12 C 0.068 3.932 13 O -0.511 6.511 14 C -0.123 4.123 15 C -0.130 4.130 16 C 0.073 3.927 17 C 0.062 3.938 18 C -0.158 4.158 19 C -0.134 4.134 20 C 0.027 3.973 21 C -0.472 4.472 22 H 0.088 0.912 23 C 0.033 3.967 24 N -0.825 5.825 25 Si 0.983 3.017 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.261 1.261 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.406 0.594 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.027 0.973 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 17.474 -1.086 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.143 4.143 3 N -0.214 5.214 4 C -0.062 4.062 5 N -0.190 5.190 6 C -0.046 4.046 7 C -0.065 4.065 8 N -0.215 5.215 9 C -0.004 4.004 10 C -0.181 4.181 11 C -0.142 4.142 12 C 0.023 3.977 13 O -0.323 6.323 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.052 4.052 17 C -0.066 4.066 18 C -0.180 4.180 19 C -0.161 4.161 20 C 0.022 3.978 21 C -0.501 4.501 22 H 0.106 0.894 23 C -0.182 4.182 24 N -0.450 5.450 25 Si 0.804 3.196 26 H -0.181 1.181 27 H -0.195 1.195 28 H -0.185 1.185 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.265 0.735 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.824 17.768 -0.905 18.720 hybrid contribution -0.127 -1.545 -0.289 1.577 sum 5.697 16.223 -1.194 17.236 Atomic orbital electron populations 1.20211 0.88999 1.01507 1.01242 1.21389 0.96631 0.87512 1.08773 1.66806 1.08822 1.30879 1.14865 1.19195 0.88246 0.89826 1.08966 1.59517 1.18722 1.00206 1.40525 1.21782 0.93093 0.88619 1.01102 1.22385 0.95554 0.97147 0.91370 1.59298 1.18279 1.01498 1.42401 1.19173 0.94875 0.91119 0.95210 1.21361 1.03155 0.94904 0.98662 1.21450 0.95666 0.97574 0.99498 1.18501 0.95469 0.87738 0.95955 1.84807 1.50691 1.19415 1.77415 1.21454 1.00310 0.93602 0.98806 1.20841 0.97739 0.97857 0.98599 1.22268 0.92689 0.87434 1.02850 1.22317 0.95417 0.98159 0.90671 1.21016 0.99435 0.92223 1.05332 1.21324 0.95026 0.96709 1.03010 1.18627 0.92896 0.94171 0.92068 1.19698 1.02233 0.92522 1.35683 0.89368 1.26799 0.94482 1.05082 0.91815 1.69863 1.18929 1.33296 1.22944 0.85218 0.79322 0.75439 0.79612 1.18131 1.19527 1.18515 0.92043 0.92370 0.91501 0.90605 0.95388 0.88025 0.92446 0.84300 0.84028 0.73528 0.83722 0.84529 0.87587 0.92769 0.95491 0.89381 0.86313 0.86649 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.57 9.58 71.24 0.68 -1.89 16 2 C 0.00 -0.10 6.86 43.22 0.30 0.20 16 3 N -0.50 -24.12 8.55 -179.36 -1.53 -25.65 16 4 C 0.17 7.68 6.41 133.31 0.85 8.53 16 5 N -0.47 -17.55 4.72 -701.13 -3.31 -20.86 16 6 C 0.08 2.78 4.77 86.31 0.41 3.19 16 7 C 0.06 1.60 4.30 86.31 0.37 1.98 16 8 N -0.50 -12.63 4.76 -694.61 -3.31 -15.93 16 9 C 0.09 2.09 5.64 38.14 0.22 2.30 16 10 C -0.16 -3.21 8.82 22.39 0.20 -3.01 16 11 C -0.12 -2.22 9.98 22.35 0.22 -2.00 16 12 C 0.07 1.23 6.70 22.49 0.15 1.38 16 13 O -0.51 -7.82 13.50 -93.59 -1.26 -9.08 16 14 C -0.12 -2.16 9.98 22.35 0.22 -1.94 16 15 C -0.13 -2.56 9.19 22.39 0.21 -2.36 16 16 C 0.07 1.83 5.38 86.31 0.46 2.29 16 17 C 0.06 1.97 5.36 86.31 0.46 2.44 16 18 C -0.16 -7.39 9.13 22.23 0.20 -7.19 16 19 C -0.13 -6.96 8.73 22.63 0.20 -6.77 16 20 C 0.03 1.43 5.58 -21.18 -0.12 1.31 16 21 C -0.47 -24.04 8.14 23.39 0.19 -23.85 16 22 H 0.09 4.24 6.86 -2.91 -0.02 4.22 16 23 C 0.03 1.61 5.19 85.23 0.44 2.05 16 24 N -0.82 -41.40 10.95 21.82 0.24 -41.16 16 25 Si 0.98 36.44 29.59 68.60 2.03 38.47 16 26 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 27 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 28 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.74 6.76 -2.38 -0.02 2.72 16 32 H 0.08 2.72 7.80 -2.39 -0.02 2.70 16 33 H 0.03 1.06 8.04 -2.39 -0.02 1.04 16 34 H 0.10 2.24 7.16 -2.39 -0.02 2.22 16 35 H 0.06 1.43 7.60 -2.38 -0.02 1.41 16 36 H 0.14 2.51 5.81 -2.91 -0.02 2.49 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.41 2.25 9.06 -74.06 -0.67 1.58 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 2.40 7.18 -2.91 -0.02 2.38 16 41 H 0.11 2.18 6.82 -2.39 -0.02 2.16 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.09 2.75 6.75 -2.39 -0.02 2.73 16 45 H 0.12 4.92 7.14 -2.91 -0.02 4.90 16 46 H 0.12 6.14 6.26 -2.91 -0.02 6.12 16 47 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 Total: -1.00 -62.70 373.33 -1.13 -63.83 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.34 Total: 33.72 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 5.67 Total: -23.33 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -7.91 Total: -103.60 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.26 Total: -9.08 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -62.70 -1.13 -63.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163817928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.672 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds