Wall clock time and date at job start Tue Mar 31 2020 23:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99734 * 2 1 4 4 C 1.52999 * 109.47027 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46965 * 180.02562 * 4 3 2 6 6 N 1.40076 * 126.05589 * 270.10627 * 5 4 3 7 7 C 1.30836 * 108.36265 * 180.27100 * 6 5 4 8 8 C 1.50699 * 125.82916 * 179.80092 * 7 6 5 9 9 C 1.40238 * 108.34317 * 359.78586 * 7 6 5 10 10 N 1.40841 * 126.07581 * 180.02562 * 9 7 6 11 11 C 1.34770 * 120.00134 * 288.52441 * 10 9 7 12 12 O 1.21608 * 119.99798 * 5.49653 * 11 10 9 13 13 N 1.34774 * 120.00186 * 185.49598 * 11 10 9 14 14 C 1.46504 * 119.99909 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46927 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99799 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99532 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99501 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00114 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99870 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00170 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46974 * 89.99636 * 22 20 18 24 24 H 1.48491 * 109.47305 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.46973 * 330.00190 * 22 20 18 26 26 C 1.35733 * 107.84526 * 359.97438 * 9 7 6 27 27 C 1.50700 * 126.21431 * 179.97438 * 26 9 7 28 28 H 1.09003 * 109.46925 * 60.00010 * 1 2 3 29 29 H 1.09002 * 109.46437 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47351 * 299.99687 * 1 2 3 31 31 H 1.09002 * 109.46832 * 60.00085 * 3 2 1 32 32 H 1.09000 * 109.47472 * 300.00049 * 3 2 1 33 33 H 1.08994 * 109.47352 * 60.00549 * 4 3 2 34 34 H 1.09003 * 109.47265 * 299.99908 * 4 3 2 35 35 H 1.09003 * 109.47379 * 276.12973 * 8 7 6 36 36 H 1.08999 * 109.47357 * 36.13220 * 8 7 6 37 37 H 1.09001 * 109.47111 * 156.13521 * 8 7 6 38 38 H 0.97005 * 119.99957 * 108.52770 * 10 9 7 39 39 H 0.97001 * 120.00429 * 0.02562 * 13 11 10 40 40 H 1.09004 * 109.46973 * 299.99706 * 14 13 11 41 41 H 1.08998 * 109.47225 * 60.00062 * 14 13 11 42 42 H 0.96999 * 120.00250 * 359.97438 * 17 15 14 43 43 H 0.97002 * 120.00521 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.47419 * 90.03030 * 27 26 9 45 45 H 1.08998 * 109.47035 * 330.02470 * 27 26 9 46 46 H 1.09007 * 109.46934 * 210.02936 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5232 0.0013 6 7 4.4651 3.2775 -1.1308 7 6 4.9779 4.4135 -0.7327 8 6 5.4754 5.5188 -1.6281 9 6 4.9852 4.4270 0.6696 10 7 5.4571 5.4728 1.4865 11 6 6.7800 5.7147 1.5744 12 8 7.5588 5.0974 0.8735 13 7 7.2397 6.6407 2.4390 14 6 8.6777 6.9041 2.5341 15 6 8.9252 7.9747 3.5655 16 8 7.9922 8.4686 4.1627 17 7 10.1834 8.3824 3.8249 18 6 10.4086 9.3559 4.7636 19 1 9.5778 9.7964 5.2948 20 6 11.7056 9.7767 5.0308 21 7 11.9214 10.7101 5.9301 22 14 13.1426 9.0153 4.1115 23 1 13.4090 9.7953 2.8763 24 1 14.3488 9.0319 4.9774 25 1 12.8120 7.6134 3.7500 26 6 4.4555 3.2536 1.0997 27 6 4.2680 2.8343 2.5350 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8574 0.6438 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 6.4999 5.3058 -1.9333 36 1 4.8396 5.5851 -2.5110 37 1 5.4466 6.4649 -1.0876 38 1 4.8299 6.0189 1.9859 39 1 6.6185 7.1329 2.9983 40 1 9.1958 5.9907 2.8264 41 1 9.0505 7.2394 1.5662 42 1 10.9296 7.9865 3.3481 43 1 12.8269 11.0037 6.1169 44 1 3.2861 3.1559 2.8822 45 1 5.0401 3.2944 3.1517 46 1 4.3423 1.7494 2.6093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202795503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:41 Heat of formation + Delta-G solvation = -27.341360 kcal Electronic energy + Delta-G solvation = -28714.277725 eV Core-core repulsion = 24448.475080 eV Total energy + Delta-G solvation = -4265.802645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66959 -39.72699 -38.53217 -38.31313 -35.18686 -34.43883 -34.17749 -33.68346 -31.96670 -31.78020 -30.33347 -28.16941 -27.76235 -26.66448 -26.14510 -24.31810 -23.24016 -21.36830 -20.13075 -19.75850 -19.61005 -18.83564 -18.15710 -17.55944 -16.93563 -16.57898 -16.09945 -15.65471 -15.62178 -15.42129 -14.98295 -14.82023 -14.56637 -14.31401 -14.01122 -13.94919 -13.72184 -13.48661 -13.16099 -13.13401 -13.03326 -12.63685 -12.48508 -12.29051 -12.17175 -12.15953 -12.08872 -11.94691 -11.77492 -11.23578 -11.00200 -10.63845 -10.30270 -10.11887 -10.05788 -9.69484 -9.48797 -9.25429 -8.84893 -8.76607 -8.37057 -8.30040 -6.40668 -3.93282 1.50470 1.89466 2.44282 2.89353 3.00291 3.05053 3.13268 3.31769 3.35331 3.58101 4.03832 4.10167 4.32785 4.35676 4.38998 4.59369 4.67042 4.68092 4.77754 4.80531 4.81224 5.06386 5.12537 5.14072 5.14567 5.18108 5.23550 5.54529 5.61553 5.64259 5.68574 5.79343 5.82310 5.86285 5.89232 6.21045 6.44285 6.62876 6.67552 6.86928 7.01571 7.45134 7.51384 8.00426 8.17222 8.44664 8.76845 8.81963 9.30141 9.63780 10.71462 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.001850 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.191663 B =15131.256855 C =15479.341966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.372 5.372 6 N -0.290 5.290 7 C 0.099 3.901 8 C -0.069 4.069 9 C 0.017 3.983 10 N -0.668 5.668 11 C 0.707 3.293 12 O -0.583 6.583 13 N -0.723 5.723 14 C 0.127 3.873 15 C 0.439 3.561 16 O -0.579 6.579 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.046 3.954 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.086 3.914 27 C -0.092 4.092 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.402 0.598 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.375 0.625 43 H 0.275 0.725 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.871 -18.855 -11.824 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.031 4.031 4 C 0.020 3.980 5 N -0.156 5.156 6 N -0.112 5.112 7 C -0.070 4.070 8 C -0.127 4.127 9 C -0.087 4.087 10 N -0.321 5.321 11 C 0.407 3.593 12 O -0.460 6.460 13 N -0.381 5.381 14 C -0.001 4.001 15 C 0.225 3.775 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.514 5.514 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.042 4.042 27 C -0.150 4.150 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.238 0.762 39 H 0.246 0.754 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.841 -19.949 -12.895 30.950 hybrid contribution 0.713 0.684 0.628 1.171 sum -19.128 -19.264 -12.267 29.791 Atomic orbital electron populations 1.22790 0.80017 1.03156 1.00347 1.87798 1.20503 1.26853 1.95565 1.22838 0.93272 0.85423 1.01602 1.21288 0.91415 0.79372 1.05911 1.48044 1.49882 1.14412 1.03260 1.77359 1.22108 1.04539 1.07194 1.22525 0.96512 0.94453 0.93508 1.20138 1.01488 0.93855 0.97248 1.16552 1.12188 0.90961 0.89015 1.41652 1.05505 1.34648 1.50313 1.15876 0.82083 0.80495 0.80850 1.90925 1.55158 1.53084 1.46868 1.44707 1.08562 1.42001 1.42847 1.20804 0.81003 0.98726 0.99615 1.19659 0.83958 0.86763 0.87151 1.90534 1.42156 1.59761 1.53925 1.42117 1.06060 1.36191 1.37039 1.19437 0.95636 1.13440 1.15356 0.86089 1.25057 0.97615 0.96444 0.96736 1.69614 1.22208 1.28087 1.31444 0.86678 0.82797 0.79630 0.80439 1.19385 1.20011 1.19194 1.21129 1.00800 0.91453 0.90810 1.20459 1.03646 1.02240 0.88638 0.93772 0.89138 0.93770 0.92628 0.92146 0.87635 0.88022 0.89988 0.91076 0.90689 0.76190 0.75439 0.89901 0.89838 0.79225 0.91397 0.90058 0.89361 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.88 10.70 -35.23 -0.38 -3.25 16 3 C 0.05 0.32 6.26 37.16 0.23 0.56 16 4 C 0.14 1.10 6.63 -4.04 -0.03 1.07 16 5 N -0.37 -4.02 3.64 -56.82 -0.21 -4.23 16 6 N -0.29 -3.83 12.57 33.74 0.42 -3.41 16 7 C 0.10 1.31 7.12 -82.27 -0.59 0.72 16 8 C -0.07 -0.79 10.42 36.01 0.38 -0.41 16 9 C 0.02 0.22 5.76 -83.86 -0.48 -0.27 16 10 N -0.67 -7.99 5.38 -14.39 -0.08 -8.07 16 11 C 0.71 10.82 8.53 -86.93 -0.74 10.08 16 12 O -0.58 -10.96 16.25 5.27 0.09 -10.88 16 13 N -0.72 -11.16 5.53 -66.41 -0.37 -11.53 16 14 C 0.13 2.16 6.15 -5.19 -0.03 2.13 16 15 C 0.44 9.44 7.85 -10.98 -0.09 9.36 16 16 O -0.58 -14.27 15.24 5.55 0.08 -14.19 16 17 N -0.58 -13.22 5.09 -10.96 -0.06 -13.28 16 18 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 19 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.80 13.96 55.50 0.77 -24.03 16 22 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 26 C 0.09 0.93 6.98 -81.72 -0.57 0.36 16 27 C -0.09 -0.68 10.08 36.01 0.36 -0.32 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.62 7.08 -51.93 -0.37 0.25 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 3.69 8.85 -40.82 -0.36 3.33 16 39 H 0.41 6.07 7.46 -40.82 -0.30 5.76 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 43 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.44 7.11 -51.93 -0.37 0.07 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -35.29 397.08 -5.83 -41.12 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.69 Total: 14.52 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -0.69 Total: 17.05 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.49 Total: -64.53 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.21 Total: -28.32 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.29 -5.83 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202795503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.777 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds