Wall clock time and date at job start Tue Mar 31 2020 23:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99734 * 2 1 4 4 C 1.52999 * 109.47027 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46965 * 180.02562 * 4 3 2 6 6 N 1.40076 * 126.05589 * 270.10627 * 5 4 3 7 7 C 1.30836 * 108.36265 * 180.27100 * 6 5 4 8 8 C 1.50699 * 125.82916 * 179.80092 * 7 6 5 9 9 C 1.40238 * 108.34317 * 359.78586 * 7 6 5 10 10 N 1.40841 * 126.07581 * 180.02562 * 9 7 6 11 11 C 1.34770 * 120.00134 * 288.52441 * 10 9 7 12 12 O 1.21608 * 119.99798 * 5.49653 * 11 10 9 13 13 N 1.34774 * 120.00186 * 185.49598 * 11 10 9 14 14 C 1.46504 * 119.99909 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46927 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99799 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99532 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99501 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00114 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99870 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00170 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46974 * 89.99636 * 22 20 18 24 24 H 1.48491 * 109.47305 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.46973 * 330.00190 * 22 20 18 26 26 C 1.35733 * 107.84526 * 359.97438 * 9 7 6 27 27 C 1.50700 * 126.21431 * 179.97438 * 26 9 7 28 28 H 1.09003 * 109.46925 * 60.00010 * 1 2 3 29 29 H 1.09002 * 109.46437 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47351 * 299.99687 * 1 2 3 31 31 H 1.09002 * 109.46832 * 60.00085 * 3 2 1 32 32 H 1.09000 * 109.47472 * 300.00049 * 3 2 1 33 33 H 1.08994 * 109.47352 * 60.00549 * 4 3 2 34 34 H 1.09003 * 109.47265 * 299.99908 * 4 3 2 35 35 H 1.09003 * 109.47379 * 276.12973 * 8 7 6 36 36 H 1.08999 * 109.47357 * 36.13220 * 8 7 6 37 37 H 1.09001 * 109.47111 * 156.13521 * 8 7 6 38 38 H 0.97005 * 119.99957 * 108.52770 * 10 9 7 39 39 H 0.97001 * 120.00429 * 0.02562 * 13 11 10 40 40 H 1.09004 * 109.46973 * 299.99706 * 14 13 11 41 41 H 1.08998 * 109.47225 * 60.00062 * 14 13 11 42 42 H 0.96999 * 120.00250 * 359.97438 * 17 15 14 43 43 H 0.97002 * 120.00521 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.47419 * 90.03030 * 27 26 9 45 45 H 1.08998 * 109.47035 * 330.02470 * 27 26 9 46 46 H 1.09007 * 109.46934 * 210.02936 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5232 0.0013 6 7 4.4651 3.2775 -1.1308 7 6 4.9779 4.4135 -0.7327 8 6 5.4754 5.5188 -1.6281 9 6 4.9852 4.4270 0.6696 10 7 5.4571 5.4728 1.4865 11 6 6.7800 5.7147 1.5744 12 8 7.5588 5.0974 0.8735 13 7 7.2397 6.6407 2.4390 14 6 8.6777 6.9041 2.5341 15 6 8.9252 7.9747 3.5655 16 8 7.9922 8.4686 4.1627 17 7 10.1834 8.3824 3.8249 18 6 10.4086 9.3559 4.7636 19 1 9.5778 9.7964 5.2948 20 6 11.7056 9.7767 5.0308 21 7 11.9214 10.7101 5.9301 22 14 13.1426 9.0153 4.1115 23 1 13.4090 9.7953 2.8763 24 1 14.3488 9.0319 4.9774 25 1 12.8120 7.6134 3.7500 26 6 4.4555 3.2536 1.0997 27 6 4.2680 2.8343 2.5350 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8574 0.6438 -0.8891 34 1 3.8567 0.6440 0.8909 35 1 6.4999 5.3058 -1.9333 36 1 4.8396 5.5851 -2.5110 37 1 5.4466 6.4649 -1.0876 38 1 4.8299 6.0189 1.9859 39 1 6.6185 7.1329 2.9983 40 1 9.1958 5.9907 2.8264 41 1 9.0505 7.2394 1.5662 42 1 10.9296 7.9865 3.3481 43 1 12.8269 11.0037 6.1169 44 1 3.2861 3.1559 2.8822 45 1 5.0401 3.2944 3.1517 46 1 4.3423 1.7494 2.6093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202795503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:40 Heat of formation + Delta-G solvation = -56.101269 kcal Electronic energy + Delta-G solvation = -28715.524848 eV Core-core repulsion = 24448.475080 eV Total energy + Delta-G solvation = -4267.049768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.55098 -41.02936 -40.03782 -39.00210 -36.32745 -36.00504 -35.26056 -35.00567 -33.80158 -32.68089 -31.14550 -29.47354 -28.48553 -27.60296 -26.77952 -26.04506 -23.92879 -22.49083 -21.43707 -21.08592 -20.62038 -20.48118 -19.55920 -18.40139 -17.70683 -17.41589 -17.11439 -16.88190 -16.76063 -16.67671 -16.32528 -15.75036 -15.71145 -15.56629 -15.32984 -14.88579 -14.84582 -14.43107 -14.28182 -14.20368 -13.97068 -13.95790 -13.62372 -13.60636 -13.33796 -13.01974 -12.94304 -12.74562 -12.51718 -12.42151 -12.28452 -11.98497 -11.91350 -11.55309 -11.41410 -10.78136 -10.61455 -10.54776 -10.30034 -10.11045 -10.05324 -9.29034 -8.43131 -6.04741 0.66698 1.11331 1.33281 1.36180 1.44993 1.47255 1.81715 1.83016 2.16022 2.22504 2.81436 2.84425 3.13580 3.29116 3.55421 3.62411 3.84512 3.91845 4.02544 4.04492 4.17340 4.40380 4.44207 4.45156 4.46306 4.49078 4.56001 4.58604 4.67021 4.72223 4.79221 4.83494 4.91383 5.01128 5.09304 5.28832 5.32000 5.51470 5.78168 5.90916 5.92620 5.98540 6.06802 6.51707 6.61975 6.81232 7.04895 7.32103 7.60180 7.81535 8.73211 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026938 B = 0.001850 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.191663 B =15131.256855 C =15479.341966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.055 3.945 4 C 0.137 3.863 5 N -0.368 5.368 6 N -0.316 5.316 7 C 0.081 3.919 8 C -0.065 4.065 9 C -0.015 4.015 10 N -0.649 5.649 11 C 0.711 3.289 12 O -0.617 6.617 13 N -0.722 5.722 14 C 0.140 3.860 15 C 0.448 3.552 16 O -0.613 6.613 17 N -0.579 5.579 18 C -0.330 4.330 19 H 0.065 0.935 20 C -0.007 4.007 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.233 1.233 26 C 0.097 3.903 27 C -0.090 4.090 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.416 0.584 39 H 0.411 0.589 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.392 0.608 43 H 0.280 0.720 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.038 -21.261 -12.773 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.023 4.023 4 C 0.016 3.984 5 N -0.152 5.152 6 N -0.138 5.138 7 C -0.087 4.087 8 C -0.124 4.124 9 C -0.119 4.119 10 N -0.302 5.302 11 C 0.411 3.589 12 O -0.497 6.497 13 N -0.380 5.380 14 C 0.011 3.989 15 C 0.235 3.765 16 O -0.498 6.498 17 N -0.219 5.219 18 C -0.459 4.459 19 H 0.083 0.917 20 C -0.207 4.207 21 N -0.566 5.566 22 Si 0.777 3.223 23 H -0.182 1.182 24 H -0.200 1.200 25 H -0.156 1.156 26 C -0.033 4.033 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.249 0.751 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.227 0.773 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.074 -22.375 -13.857 33.100 hybrid contribution 0.553 1.384 0.956 1.771 sum -19.521 -20.991 -12.901 31.435 Atomic orbital electron populations 1.22975 0.78697 1.04268 1.00982 1.87770 1.21977 1.26940 1.95663 1.22696 0.92585 0.85407 1.01569 1.21529 0.92001 0.78047 1.06840 1.48302 1.49258 1.14933 1.02742 1.77298 1.22986 1.04961 1.08584 1.22791 0.96825 0.94855 0.94204 1.20115 1.00979 0.93527 0.97733 1.16780 1.14045 0.92089 0.89007 1.41384 1.04514 1.34521 1.49768 1.15891 0.82824 0.79904 0.80248 1.90904 1.56346 1.54276 1.48127 1.44618 1.07994 1.42281 1.43127 1.20682 0.82272 0.97412 0.98505 1.20495 0.82981 0.86382 0.86649 1.90524 1.43254 1.60900 1.55153 1.41922 1.07245 1.35888 1.36834 1.19033 0.94715 1.15311 1.16854 0.91739 1.26028 1.00721 0.96535 0.97398 1.69775 1.23391 1.29951 1.33496 0.85471 0.77565 0.80385 0.78878 1.18178 1.19951 1.15585 1.21601 0.98898 0.90620 0.92144 1.20599 1.04698 1.03422 0.86124 0.93499 0.87879 0.92779 0.91589 0.93242 0.87928 0.85913 0.91224 0.89625 0.90647 0.74572 0.75090 0.88174 0.88017 0.77269 0.90989 0.87642 0.90078 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.26 10.70 -148.98 -1.59 -6.85 16 3 C 0.06 0.67 6.26 71.98 0.45 1.12 16 4 C 0.14 1.86 6.63 86.38 0.57 2.43 16 5 N -0.37 -7.41 3.64 -333.69 -1.21 -8.63 16 6 N -0.32 -8.15 12.57 -47.16 -0.59 -8.74 16 7 C 0.08 2.11 7.12 43.19 0.31 2.42 16 8 C -0.06 -1.48 10.42 71.24 0.74 -0.74 16 9 C -0.01 -0.36 5.76 37.60 0.22 -0.14 16 10 N -0.65 -14.62 5.38 -317.71 -1.71 -16.33 16 11 C 0.71 20.71 8.53 179.06 1.53 22.24 16 12 O -0.62 -22.33 16.25 -4.05 -0.07 -22.40 16 13 N -0.72 -21.16 5.53 -482.26 -2.67 -23.83 16 14 C 0.14 4.46 6.15 85.63 0.53 4.99 16 15 C 0.45 18.96 7.85 87.66 0.69 19.65 16 16 O -0.61 -30.58 15.24 -3.07 -0.05 -30.62 16 17 N -0.58 -26.14 5.09 -306.98 -1.56 -27.70 16 18 C -0.33 -18.50 10.16 84.04 0.85 -17.65 16 19 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 20 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 21 N -0.93 -54.03 13.96 21.66 0.30 -53.72 16 22 Si 0.96 37.87 27.74 68.60 1.90 39.77 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16 26 C 0.10 1.90 6.98 41.36 0.29 2.19 16 27 C -0.09 -1.08 10.08 71.24 0.72 -0.36 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.12 1.14 7.08 -2.39 -0.02 1.13 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.42 7.00 8.85 -92.70 -0.82 6.18 16 39 H 0.41 11.77 7.46 -92.71 -0.69 11.08 16 40 H 0.10 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.39 14.90 5.76 -92.71 -0.53 14.36 16 43 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.09 0.78 7.11 -2.38 -0.02 0.76 16 Total: -1.00 -79.47 397.08 0.30 -79.18 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -1.06 Total: 42.19 kcal Atomic # 6 Polarization: 29.09 SS G_CDS: 8.61 Total: 37.70 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -7.44 Total: -138.96 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -1.71 Total: -59.88 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.77 kcal Total: -79.47 0.30 -79.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202795503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.075 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds