Wall clock time and date at job start Tue Mar 31 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38863 * 119.24916 * 2 1 4 4 C 1.36882 * 119.80335 * 180.25588 * 3 2 1 5 5 C 1.41130 * 118.38875 * 359.47727 * 4 3 2 6 6 C 1.40883 * 120.71741 * 180.29131 * 5 4 3 7 7 H 1.07998 * 120.00109 * 152.86889 * 6 5 4 8 8 C 1.40078 * 120.00246 * 332.88020 * 6 5 4 9 9 N 1.30770 * 119.99824 * 345.55666 * 8 6 5 10 10 Si 1.86801 * 120.00206 * 165.55478 * 8 6 5 11 11 H 1.48507 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47152 * 119.99720 * 10 8 6 13 13 H 1.48498 * 109.47100 * 240.00198 * 10 8 6 14 14 C 1.41860 * 118.56231 * 0.27630 * 5 4 3 15 15 C 1.47830 * 119.98785 * 179.97438 * 14 5 4 16 16 C 1.40103 * 120.56557 * 136.10061 * 15 14 5 17 17 C 1.38307 * 118.28543 * 179.75913 * 16 15 14 18 18 C 1.38398 * 119.31405 * 0.51398 * 17 16 15 19 19 C 1.50707 * 119.45001 * 179.74682 * 18 17 16 20 20 N 1.46904 * 109.46872 * 94.97719 * 19 18 17 21 21 C 1.47011 * 111.00123 * 293.63393 * 20 19 18 22 22 C 1.53098 * 109.25748 * 177.61086 * 21 20 19 23 23 O 1.43022 * 109.25792 * 56.84474 * 22 21 20 24 24 C 1.43012 * 113.73969 * 301.33354 * 23 22 21 25 25 C 1.47010 * 110.99247 * 169.99771 * 20 19 18 26 26 N 1.31935 * 121.09689 * 359.72325 * 18 17 16 27 27 C 1.31676 * 121.88092 * 0.02562 * 26 18 17 28 28 N 1.31741 * 119.24792 * 179.71967 * 2 1 3 29 29 H 1.09002 * 109.47003 * 270.27190 * 1 2 3 30 30 H 1.08995 * 109.46987 * 30.27886 * 1 2 3 31 31 H 1.09001 * 109.47126 * 150.27313 * 1 2 3 32 32 H 1.08002 * 120.09905 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.81004 * 179.74864 * 4 3 2 34 34 H 0.97006 * 119.99849 * 180.02562 * 9 8 6 35 35 H 1.07997 * 120.85369 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.34824 * 180.23940 * 17 16 15 37 37 H 1.08996 * 109.46677 * 214.97567 * 19 18 17 38 38 H 1.08998 * 109.47023 * 334.97460 * 19 18 17 39 39 H 1.09006 * 109.50348 * 297.54432 * 21 20 19 40 40 H 1.09001 * 109.50929 * 57.67329 * 21 20 19 41 41 H 1.09004 * 109.50352 * 296.91508 * 22 21 20 42 42 H 1.08997 * 109.50542 * 176.78135 * 22 21 20 43 43 H 1.09003 * 109.50425 * 298.73582 * 24 23 22 44 44 H 1.09000 * 109.53969 * 178.62824 * 24 23 22 45 45 H 1.09002 * 109.51129 * 302.32801 * 25 20 19 46 46 H 1.08995 * 109.50953 * 62.46091 * 25 20 19 47 47 H 1.08008 * 119.71929 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5543 1.2248 -0.0053 5 6 4.2373 -0.0102 0.0007 6 6 5.6454 -0.0538 0.0018 7 1 6.1592 -0.9005 0.4324 8 6 6.3793 1.0013 -0.5555 9 7 5.7840 1.8800 -1.3193 10 14 8.2083 1.1530 -0.2075 11 1 8.6375 0.0416 0.6791 12 1 8.9625 1.0872 -1.4851 13 1 8.4790 2.4512 0.4608 14 6 3.4752 -1.2067 0.0059 15 6 4.1582 -2.5177 0.0116 16 6 3.7165 -3.5475 0.8526 17 6 4.3870 -4.7566 0.8160 18 6 5.4691 -4.9059 -0.0338 19 6 6.2056 -6.2203 -0.0719 20 7 5.6753 -7.0471 -1.1642 21 6 4.2839 -7.4410 -0.8992 22 6 3.7530 -8.2487 -2.0865 23 8 4.6028 -9.3778 -2.3066 24 6 5.9653 -9.0306 -2.5683 25 6 6.5186 -8.2307 -1.3859 26 7 5.8664 -3.9169 -0.8115 27 6 5.2582 -2.7490 -0.8167 28 7 2.1507 -1.1494 0.0056 29 1 -0.3633 0.0049 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.6349 2.1407 0.0004 33 1 4.0984 2.1577 -0.0095 34 1 6.2922 2.6104 -1.7055 35 1 2.8720 -3.4021 1.5098 36 1 4.0723 -5.5744 1.4474 37 1 7.2672 -6.0371 -0.2372 38 1 6.0699 -6.7403 0.8764 39 1 4.2440 -8.0511 0.0032 40 1 3.6726 -6.5488 -0.7635 41 1 3.7428 -7.6216 -2.9779 42 1 2.7412 -8.5914 -1.8701 43 1 6.0193 -8.4262 -3.4737 44 1 6.5538 -9.9385 -2.7009 45 1 7.5386 -7.9151 -1.6055 46 1 6.5143 -8.8535 -0.4914 47 1 5.6127 -1.9637 -1.4680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239582823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:27 Heat of formation + Delta-G solvation = 15.081105 kcal Electronic energy + Delta-G solvation = -28841.317496 eV Core-core repulsion = 24988.203690 eV Total energy + Delta-G solvation = -3853.113806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.04117 -39.29412 -38.34385 -35.87106 -34.46077 -32.82872 -31.68702 -31.23003 -30.92000 -30.24850 -28.29607 -27.54081 -25.14542 -24.15129 -24.04799 -22.85147 -22.02172 -20.76221 -20.41084 -20.28579 -17.54021 -16.72016 -16.33229 -16.15917 -15.83653 -15.56166 -15.42219 -15.15395 -14.86438 -14.45495 -14.32059 -14.05924 -14.05237 -13.37969 -13.30518 -12.83689 -12.66415 -12.51577 -12.45467 -12.03320 -11.96538 -11.86609 -11.61988 -11.53291 -11.51112 -11.45258 -11.22790 -11.05145 -10.97796 -10.68212 -10.62980 -9.96270 -9.81297 -9.51329 -9.21253 -8.85909 -8.67762 -8.40987 -8.19401 -8.10694 -7.44075 -7.00159 -4.61983 1.52552 1.94165 2.51695 2.86001 2.96068 3.02125 3.06644 3.65621 3.75083 3.80135 4.39340 4.53456 4.61391 4.80450 4.87775 5.02185 5.04618 5.10076 5.23248 5.31567 5.37788 5.43805 5.49457 5.52184 5.59591 5.65313 5.75588 5.78460 5.82182 5.87305 5.92270 5.98394 6.16282 6.30977 6.36980 6.41259 6.46496 6.59323 6.69749 6.85122 6.86901 6.88624 6.92188 7.01807 7.05834 7.13120 7.36853 7.56011 7.70198 7.80002 8.24974 8.47712 8.53398 8.68617 9.45994 9.87437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.003296 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.693028 B = 8493.214384 C =10386.961184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.141 4.141 4 C -0.125 4.125 5 C 0.086 3.914 6 C -0.440 4.440 7 H 0.088 0.912 8 C 0.076 3.924 9 N -0.781 5.781 10 Si 0.910 3.090 11 H -0.257 1.257 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.011 3.989 15 C -0.018 4.018 16 C -0.073 4.073 17 C -0.173 4.173 18 C 0.100 3.900 19 C 0.114 3.886 20 N -0.527 5.527 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.064 3.936 25 C 0.019 3.981 26 N -0.470 5.470 27 C 0.121 3.879 28 N -0.447 5.447 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.286 0.714 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.041 0.959 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -12.031 1.064 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.161 4.161 4 C -0.151 4.151 5 C 0.081 3.919 6 C -0.468 4.468 7 H 0.106 0.894 8 C -0.144 4.144 9 N -0.405 5.405 10 Si 0.734 3.266 11 H -0.180 1.180 12 H -0.194 1.194 13 H -0.195 1.195 14 C -0.127 4.127 15 C -0.021 4.021 16 C -0.099 4.099 17 C -0.194 4.194 18 C -0.038 4.038 19 C -0.013 4.013 20 N -0.252 5.252 21 C -0.113 4.113 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.013 4.013 25 C -0.109 4.109 26 N -0.178 5.178 27 C -0.038 4.038 28 N -0.156 5.156 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.778 -12.641 -0.058 12.665 hybrid contribution 0.597 1.193 1.454 1.973 sum 1.375 -11.447 1.396 11.614 Atomic orbital electron populations 1.20288 0.91451 1.01004 1.00441 1.20250 0.94863 0.88474 1.11335 1.21269 0.95439 0.97194 1.02226 1.21410 0.92625 0.98789 1.02273 1.18313 0.94060 0.90794 0.88715 1.19658 0.90973 1.04193 1.32018 0.89379 1.26006 1.01770 0.94095 0.92569 1.69750 1.39004 1.11065 1.20687 0.86192 0.81172 0.79594 0.79682 1.17997 1.19428 1.19490 1.19229 0.88384 0.90772 1.14313 1.19449 0.95001 0.92722 0.94916 1.21606 0.98659 0.92159 0.97522 1.21678 0.97824 0.98211 1.01694 1.20700 0.94466 0.94318 0.94288 1.20831 0.99187 0.89456 0.91842 1.62111 1.01848 1.18182 1.43082 1.22857 0.90737 1.00139 0.97565 1.22672 0.93727 0.87552 0.97314 1.87952 1.19288 1.31742 1.91776 1.22652 0.82717 0.99167 0.96769 1.22779 0.98119 0.91443 0.98556 1.67409 1.30059 1.00146 1.20209 1.23174 0.91540 0.93050 0.96028 1.66802 1.09507 1.29393 1.09870 0.93151 0.92833 0.92575 0.88205 0.85442 0.90255 0.85497 0.86326 0.89196 0.93653 0.94100 0.89040 0.92137 0.88511 0.92154 0.88611 0.89454 0.94127 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.01 0.37 -0.92 16 2 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 3 C -0.14 -3.12 9.65 -39.84 -0.38 -3.50 16 4 C -0.13 -3.03 8.73 -38.98 -0.34 -3.37 16 5 C 0.09 2.13 5.55 -106.41 -0.59 1.54 16 6 C -0.44 -10.60 6.78 -37.89 -0.26 -10.86 16 7 H 0.09 2.11 6.41 -52.49 -0.34 1.78 16 8 C 0.08 1.74 5.21 -17.31 -0.09 1.65 16 9 N -0.78 -18.38 10.97 55.55 0.61 -17.77 16 10 Si 0.91 17.52 29.58 -169.99 -5.03 12.49 16 11 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 12 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 13 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 14 C 0.01 0.27 6.45 -82.24 -0.53 -0.26 16 15 C -0.02 -0.39 5.26 -104.76 -0.55 -0.94 16 16 C -0.07 -1.38 9.83 -38.86 -0.38 -1.76 16 17 C -0.17 -2.81 8.27 -39.50 -0.33 -3.14 16 18 C 0.10 1.69 5.66 -82.49 -0.47 1.23 16 19 C 0.11 1.55 5.28 -4.97 -0.03 1.52 16 20 N -0.53 -6.87 4.72 -235.75 -1.11 -7.98 16 21 C 0.02 0.19 5.33 -3.71 -0.02 0.17 16 22 C 0.06 0.73 7.01 37.21 0.26 0.99 16 23 O -0.39 -4.70 10.83 -35.23 -0.38 -5.08 16 24 C 0.06 0.65 7.01 37.21 0.26 0.91 16 25 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 26 N -0.47 -9.24 10.25 -9.10 -0.09 -9.33 16 27 C 0.12 2.57 9.00 -17.10 -0.15 2.42 16 28 N -0.45 -10.57 10.07 -5.45 -0.05 -10.62 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 3.11 6.34 -52.49 -0.33 2.78 16 34 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 35 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 38 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 1.23 6.27 -51.93 -0.33 0.91 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.17 3.71 6.76 -52.48 -0.35 3.35 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -27.45 380.94 -10.94 -38.39 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.81 Total: 9.03 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.81 Total: -14.86 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.65 Total: -45.71 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.45 -10.94 -38.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239582823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.469 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds