Wall clock time and date at job start Tue Mar 31 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38863 * 119.24916 * 2 1 4 4 C 1.36882 * 119.80335 * 180.25588 * 3 2 1 5 5 C 1.41130 * 118.38875 * 359.47727 * 4 3 2 6 6 C 1.40883 * 120.71741 * 180.29131 * 5 4 3 7 7 H 1.07998 * 120.00109 * 152.86889 * 6 5 4 8 8 C 1.40078 * 120.00246 * 332.88020 * 6 5 4 9 9 N 1.30770 * 119.99824 * 345.55666 * 8 6 5 10 10 Si 1.86801 * 120.00206 * 165.55478 * 8 6 5 11 11 H 1.48507 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47152 * 119.99720 * 10 8 6 13 13 H 1.48498 * 109.47100 * 240.00198 * 10 8 6 14 14 C 1.41860 * 118.56231 * 0.27630 * 5 4 3 15 15 C 1.47830 * 119.98785 * 179.97438 * 14 5 4 16 16 C 1.40103 * 120.56557 * 136.10061 * 15 14 5 17 17 C 1.38307 * 118.28543 * 179.75913 * 16 15 14 18 18 C 1.38398 * 119.31405 * 0.51398 * 17 16 15 19 19 C 1.50707 * 119.45001 * 179.74682 * 18 17 16 20 20 N 1.46904 * 109.46872 * 94.97719 * 19 18 17 21 21 C 1.47011 * 111.00123 * 293.63393 * 20 19 18 22 22 C 1.53098 * 109.25748 * 177.61086 * 21 20 19 23 23 O 1.43022 * 109.25792 * 56.84474 * 22 21 20 24 24 C 1.43012 * 113.73969 * 301.33354 * 23 22 21 25 25 C 1.47010 * 110.99247 * 169.99771 * 20 19 18 26 26 N 1.31935 * 121.09689 * 359.72325 * 18 17 16 27 27 C 1.31676 * 121.88092 * 0.02562 * 26 18 17 28 28 N 1.31741 * 119.24792 * 179.71967 * 2 1 3 29 29 H 1.09002 * 109.47003 * 270.27190 * 1 2 3 30 30 H 1.08995 * 109.46987 * 30.27886 * 1 2 3 31 31 H 1.09001 * 109.47126 * 150.27313 * 1 2 3 32 32 H 1.08002 * 120.09905 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.81004 * 179.74864 * 4 3 2 34 34 H 0.97006 * 119.99849 * 180.02562 * 9 8 6 35 35 H 1.07997 * 120.85369 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.34824 * 180.23940 * 17 16 15 37 37 H 1.08996 * 109.46677 * 214.97567 * 19 18 17 38 38 H 1.08998 * 109.47023 * 334.97460 * 19 18 17 39 39 H 1.09006 * 109.50348 * 297.54432 * 21 20 19 40 40 H 1.09001 * 109.50929 * 57.67329 * 21 20 19 41 41 H 1.09004 * 109.50352 * 296.91508 * 22 21 20 42 42 H 1.08997 * 109.50542 * 176.78135 * 22 21 20 43 43 H 1.09003 * 109.50425 * 298.73582 * 24 23 22 44 44 H 1.09000 * 109.53969 * 178.62824 * 24 23 22 45 45 H 1.09002 * 109.51129 * 302.32801 * 25 20 19 46 46 H 1.08995 * 109.50953 * 62.46091 * 25 20 19 47 47 H 1.08008 * 119.71929 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5543 1.2248 -0.0053 5 6 4.2373 -0.0102 0.0007 6 6 5.6454 -0.0538 0.0018 7 1 6.1592 -0.9005 0.4324 8 6 6.3793 1.0013 -0.5555 9 7 5.7840 1.8800 -1.3193 10 14 8.2083 1.1530 -0.2075 11 1 8.6375 0.0416 0.6791 12 1 8.9625 1.0872 -1.4851 13 1 8.4790 2.4512 0.4608 14 6 3.4752 -1.2067 0.0059 15 6 4.1582 -2.5177 0.0116 16 6 3.7165 -3.5475 0.8526 17 6 4.3870 -4.7566 0.8160 18 6 5.4691 -4.9059 -0.0338 19 6 6.2056 -6.2203 -0.0719 20 7 5.6753 -7.0471 -1.1642 21 6 4.2839 -7.4410 -0.8992 22 6 3.7530 -8.2487 -2.0865 23 8 4.6028 -9.3778 -2.3066 24 6 5.9653 -9.0306 -2.5683 25 6 6.5186 -8.2307 -1.3859 26 7 5.8664 -3.9169 -0.8115 27 6 5.2582 -2.7490 -0.8167 28 7 2.1507 -1.1494 0.0056 29 1 -0.3633 0.0049 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.6349 2.1407 0.0004 33 1 4.0984 2.1577 -0.0095 34 1 6.2922 2.6104 -1.7055 35 1 2.8720 -3.4021 1.5098 36 1 4.0723 -5.5744 1.4474 37 1 7.2672 -6.0371 -0.2372 38 1 6.0699 -6.7403 0.8764 39 1 4.2440 -8.0511 0.0032 40 1 3.6726 -6.5488 -0.7635 41 1 3.7428 -7.6216 -2.9779 42 1 2.7412 -8.5914 -1.8701 43 1 6.0193 -8.4262 -3.4737 44 1 6.5538 -9.9385 -2.7009 45 1 7.5386 -7.9151 -1.6055 46 1 6.5143 -8.8535 -0.4914 47 1 5.6127 -1.9637 -1.4680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239582823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:26 Heat of formation + Delta-G solvation = -1.390859 kcal Electronic energy + Delta-G solvation = -28842.031774 eV Core-core repulsion = 24988.203690 eV Total energy + Delta-G solvation = -3853.828084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39023 -40.48783 -39.89576 -36.89892 -36.18968 -34.37475 -33.12911 -32.65925 -32.09460 -31.69476 -29.74998 -28.91171 -26.52853 -25.50397 -25.06062 -24.35958 -23.47932 -22.41218 -21.87996 -21.32257 -19.32351 -17.75151 -17.61865 -17.49845 -17.23195 -16.95456 -16.75547 -16.18703 -15.97958 -15.84093 -15.71410 -15.39815 -15.16367 -14.88497 -14.83623 -14.30684 -14.12999 -13.90793 -13.66934 -13.46819 -13.35021 -13.17467 -13.08198 -12.94334 -12.92504 -12.65878 -12.64514 -12.35631 -12.21440 -12.10200 -11.68911 -11.54989 -11.22324 -10.81054 -10.64551 -10.39756 -10.24799 -9.97447 -9.81173 -9.34677 -9.14669 -8.72563 -6.42665 -0.00416 0.44129 0.82362 1.11455 1.35716 1.45515 1.49357 2.14135 2.61005 2.68044 2.92633 3.15685 3.33265 3.61458 3.76772 3.84432 3.95755 4.02526 4.09858 4.20154 4.21673 4.23573 4.33686 4.35856 4.41698 4.52103 4.60408 4.63263 4.66318 4.73254 4.81804 4.84105 4.88049 4.90022 4.95015 4.97895 5.00114 5.02497 5.10129 5.19653 5.29060 5.36009 5.53638 5.75935 5.81410 5.92737 5.94777 6.00531 6.04099 6.16907 6.45573 6.69104 6.75192 7.18615 7.67957 8.18001 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.003296 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.693028 B = 8493.214384 C =10386.961184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.016 4.016 3 C -0.145 4.145 4 C -0.147 4.147 5 C 0.057 3.943 6 C -0.459 4.459 7 H 0.079 0.921 8 C 0.043 3.957 9 N -0.811 5.811 10 Si 0.974 3.026 11 H -0.262 1.262 12 H -0.264 1.264 13 H -0.259 1.259 14 C 0.000 4.000 15 C -0.047 4.047 16 C -0.073 4.073 17 C -0.157 4.157 18 C 0.106 3.894 19 C 0.118 3.882 20 N -0.547 5.547 21 C 0.018 3.982 22 C 0.065 3.935 23 O -0.400 6.400 24 C 0.061 3.939 25 C 0.022 3.978 26 N -0.485 5.485 27 C 0.109 3.891 28 N -0.464 5.464 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.294 0.706 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.115 0.885 43 H 0.051 0.949 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -14.104 2.004 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.173 4.173 5 C 0.052 3.948 6 C -0.487 4.487 7 H 0.097 0.903 8 C -0.174 4.174 9 N -0.435 5.435 10 Si 0.795 3.205 11 H -0.186 1.186 12 H -0.188 1.188 13 H -0.184 1.184 14 C -0.138 4.138 15 C -0.050 4.050 16 C -0.100 4.100 17 C -0.177 4.177 18 C -0.033 4.033 19 C -0.009 4.009 20 N -0.273 5.273 21 C -0.110 4.110 22 C -0.012 4.012 23 O -0.319 6.319 24 C -0.016 4.016 25 C -0.106 4.106 26 N -0.194 5.194 27 C -0.048 4.048 28 N -0.173 5.173 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.070 0.930 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.070 0.930 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.713 -14.705 0.873 14.748 hybrid contribution 0.529 1.694 1.142 2.110 sum 1.242 -13.011 2.015 13.225 Atomic orbital electron populations 1.20349 0.87961 1.02294 1.02041 1.21081 0.97267 0.88010 1.09424 1.21589 0.94866 0.98713 1.01366 1.21465 0.93754 0.98311 1.03750 1.18635 0.94831 0.91561 0.89723 1.19667 0.91084 1.04771 1.33221 0.90317 1.26682 1.05443 0.93412 0.91909 1.69779 1.40643 1.11730 1.21370 0.85255 0.76298 0.79524 0.79460 1.18609 1.18843 1.18376 1.19618 0.88793 0.91707 1.13660 1.19457 0.95818 0.92887 0.96800 1.21738 0.98904 0.92402 0.96913 1.22018 0.96548 0.98041 1.01128 1.21387 0.94332 0.94861 0.92715 1.20854 0.98714 0.87882 0.93469 1.62052 1.02639 1.19592 1.43047 1.22821 0.90120 0.99665 0.98421 1.22702 0.94635 0.87341 0.96525 1.87941 1.20169 1.32034 1.91770 1.22817 0.82223 1.00258 0.96269 1.22833 0.98124 0.90568 0.99070 1.67415 1.30439 1.00193 1.21329 1.22784 0.92115 0.93450 0.96493 1.66924 1.09378 1.30205 1.10751 0.91278 0.90509 0.92310 0.85342 0.86445 0.89490 0.84941 0.82280 0.89003 0.90971 0.92763 0.90594 0.93473 0.86754 0.93014 0.86048 0.88459 0.93030 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 10.15 71.24 0.72 -1.54 16 2 C -0.02 -0.68 6.79 42.72 0.29 -0.39 16 3 C -0.15 -6.47 9.65 22.10 0.21 -6.26 16 4 C -0.15 -7.38 8.73 22.66 0.20 -7.18 16 5 C 0.06 2.97 5.55 -21.03 -0.12 2.86 16 6 C -0.46 -23.34 6.78 23.36 0.16 -23.18 16 7 H 0.08 4.02 6.41 -2.91 -0.02 4.00 16 8 C 0.04 2.04 5.21 85.30 0.44 2.49 16 9 N -0.81 -39.62 10.97 21.85 0.24 -39.38 16 10 Si 0.97 36.87 29.58 68.60 2.03 38.90 16 11 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 14 C 0.00 0.00 6.45 42.47 0.27 0.28 16 15 C -0.05 -2.08 5.26 -19.95 -0.10 -2.19 16 16 C -0.07 -2.73 9.83 22.74 0.22 -2.51 16 17 C -0.16 -4.78 8.27 22.32 0.18 -4.60 16 18 C 0.11 3.43 5.66 42.58 0.24 3.67 16 19 C 0.12 2.89 5.28 85.56 0.45 3.34 16 20 N -0.55 -13.02 4.72 -899.77 -4.24 -17.26 16 21 C 0.02 0.39 5.33 86.31 0.46 0.85 16 22 C 0.06 1.36 7.01 72.01 0.50 1.87 16 23 O -0.40 -8.78 10.83 -148.98 -1.61 -10.39 16 24 C 0.06 1.09 7.01 72.02 0.50 1.59 16 25 C 0.02 0.39 5.64 86.32 0.49 0.88 16 26 N -0.48 -19.29 10.25 -182.69 -1.87 -21.16 16 27 C 0.11 4.88 9.00 85.05 0.77 5.64 16 28 N -0.46 -22.26 10.07 -171.14 -1.72 -23.98 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.12 6.01 6.34 -2.91 -0.02 5.99 16 34 H 0.29 12.91 8.30 -92.70 -0.77 12.14 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.09 2.23 8.04 -2.39 -0.02 2.21 16 38 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 39 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.08 1.90 6.27 -2.39 -0.01 1.88 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 1.56 8.09 -2.39 -0.02 1.55 16 46 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 47 H 0.14 6.83 6.76 -2.91 -0.02 6.81 16 Total: -1.00 -61.93 380.94 -0.30 -62.24 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.98 Total: 35.43 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 5.90 Total: -24.39 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -7.60 Total: -101.78 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.61 Total: -10.39 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -61.93 -0.30 -62.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239582823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.849 kcal (2) G-P(sol) polarization free energy of solvation -61.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds