Wall clock time and date at job start Tue Mar 31 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38871 * 119.25254 * 2 1 4 4 C 1.36879 * 119.80052 * 180.23268 * 3 2 1 5 5 C 1.41118 * 118.39520 * 359.48036 * 4 3 2 6 6 C 1.40894 * 120.72119 * 180.25203 * 5 4 3 7 7 H 1.07999 * 119.99608 * 152.93382 * 6 5 4 8 8 C 1.40071 * 119.99703 * 332.93935 * 6 5 4 9 9 N 1.30769 * 120.00295 * 345.50412 * 8 6 5 10 10 Si 1.86797 * 119.99769 * 165.51240 * 8 6 5 11 11 H 1.48498 * 109.47748 * 59.99608 * 10 8 6 12 12 H 1.48507 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47060 * 299.99503 * 10 8 6 14 14 C 1.41873 * 118.56312 * 0.26865 * 5 4 3 15 15 C 1.47823 * 119.99114 * 180.02562 * 14 5 4 16 16 C 1.39674 * 120.56624 * 316.13474 * 15 14 5 17 17 N 1.31661 * 120.54375 * 179.68159 * 16 15 14 18 18 C 1.31965 * 121.88652 * 0.63508 * 17 16 15 19 19 C 1.38345 * 121.09673 * 359.65366 * 18 17 16 20 20 C 1.50703 * 120.33898 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.47399 * 269.98067 * 20 19 18 22 22 C 1.47016 * 110.99637 * 293.63133 * 21 20 19 23 23 C 1.53098 * 109.25503 * 177.60449 * 22 21 20 24 24 O 1.43023 * 109.25395 * 56.85443 * 23 22 21 25 25 C 1.43013 * 113.73756 * 301.32388 * 24 23 22 26 26 C 1.47010 * 110.99960 * 170.00193 * 21 20 19 27 27 C 1.38357 * 119.31867 * 0.02562 * 19 18 17 28 28 N 1.31746 * 119.24511 * 179.69636 * 2 1 3 29 29 H 1.08996 * 109.47443 * 270.29909 * 1 2 3 30 30 H 1.09004 * 109.46720 * 30.29564 * 1 2 3 31 31 H 1.08994 * 109.47589 * 150.29477 * 1 2 3 32 32 H 1.08000 * 120.09788 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.80587 * 179.74585 * 4 3 2 34 34 H 0.96998 * 120.00016 * 180.02562 * 9 8 6 35 35 H 1.07996 * 119.73077 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.45030 * 179.67486 * 18 17 16 37 37 H 1.09004 * 109.46989 * 29.97971 * 20 19 18 38 38 H 1.09001 * 109.47009 * 149.97239 * 20 19 18 39 39 H 1.08990 * 109.50901 * 297.54376 * 22 21 20 40 40 H 1.09004 * 109.50081 * 57.67372 * 22 21 20 41 41 H 1.08997 * 109.50844 * 296.91657 * 23 22 21 42 42 H 1.08998 * 109.53855 * 176.80895 * 23 22 21 43 43 H 1.08998 * 109.51010 * 298.74172 * 25 24 23 44 44 H 1.08998 * 109.53968 * 178.62665 * 25 24 23 45 45 H 1.09005 * 109.50500 * 302.32752 * 26 21 20 46 46 H 1.08995 * 109.50954 * 62.41147 * 26 21 20 47 47 H 1.07999 * 120.85438 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2116 0.0000 4 6 3.5543 1.2247 -0.0048 5 6 4.2373 -0.0102 0.0016 6 6 5.6455 -0.0539 0.0023 7 1 6.1592 -0.9010 0.4323 8 6 6.3792 1.0014 -0.5545 9 7 5.7839 1.8801 -1.3185 10 14 8.2080 1.1536 -0.2058 11 1 8.9072 -0.0639 -0.6895 12 1 8.7482 2.3458 -0.9075 13 1 8.4227 1.2997 1.2564 14 6 3.4751 -1.2068 0.0068 15 6 4.1581 -2.5178 0.0142 16 6 5.2561 -2.7514 -0.8169 17 7 5.8679 -3.9171 -0.8055 18 6 5.4687 -4.9063 -0.0286 19 6 4.3857 -4.7567 0.8191 20 6 3.9448 -5.8975 1.6996 21 7 2.9555 -6.7143 0.9841 22 6 1.7153 -5.9587 0.7549 23 6 0.7370 -6.8243 -0.0435 24 8 0.5039 -8.0462 0.6623 25 6 1.6904 -8.8078 0.9021 26 6 2.6784 -7.9622 1.7101 27 6 3.7115 -3.5489 0.8503 28 7 2.1506 -1.1495 0.0061 29 1 -0.3634 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6350 2.1407 0.0004 33 1 4.0985 2.1576 -0.0090 34 1 6.2921 2.6106 -1.7044 35 1 5.6091 -1.9677 -1.4709 36 1 5.9965 -5.8482 -0.0547 37 1 4.8072 -6.5131 1.9557 38 1 3.4979 -5.5011 2.6113 39 1 1.2684 -5.6934 1.7129 40 1 1.9403 -5.0516 0.1939 41 1 1.1617 -7.0449 -1.0228 42 1 -0.2050 -6.2901 -0.1674 43 1 2.1429 -9.0860 -0.0496 44 1 1.4386 -9.7081 1.4626 45 1 3.6064 -8.5177 1.8464 46 1 2.2476 -7.7290 2.6837 47 1 2.8627 -3.4050 1.5023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245248219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:35 Heat of formation + Delta-G solvation = 13.346445 kcal Electronic energy + Delta-G solvation = -29186.688883 eV Core-core repulsion = 25333.499857 eV Total energy + Delta-G solvation = -3853.189026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.04601 -39.28381 -38.33322 -35.98327 -34.46694 -32.76067 -32.17026 -31.17503 -30.98745 -29.67437 -28.18396 -27.58575 -24.86118 -24.44409 -24.07891 -23.11161 -21.84696 -20.86498 -20.51138 -19.88996 -17.54641 -16.65958 -16.37637 -16.22528 -15.96030 -15.61075 -15.35736 -15.12539 -14.93354 -14.59243 -14.35014 -14.12060 -13.96630 -13.29977 -13.03337 -12.84953 -12.69004 -12.55305 -12.39173 -12.11030 -12.05003 -11.88236 -11.60424 -11.53811 -11.50555 -11.47730 -11.29275 -11.04384 -10.90480 -10.67516 -10.63234 -9.99821 -9.79349 -9.49828 -9.21009 -8.86953 -8.68368 -8.39246 -8.20180 -8.12300 -7.45627 -7.00655 -4.62770 1.58868 1.84113 2.53850 2.88004 2.94568 2.98258 3.08429 3.68487 3.74555 3.83267 4.38871 4.52750 4.72671 4.85736 4.91843 5.00043 5.05004 5.14561 5.22886 5.25052 5.37057 5.44991 5.49066 5.53944 5.55885 5.64782 5.66449 5.77479 5.87640 5.89589 5.95110 5.99893 6.17768 6.29292 6.36864 6.40920 6.46278 6.63887 6.69408 6.84970 6.86357 6.88980 6.89153 7.03735 7.04291 7.11732 7.36260 7.55326 7.69268 7.79284 8.23892 8.47086 8.52585 8.65754 9.44849 9.87126 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003490 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.368619 B = 8019.962801 C = 9863.821257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.141 4.141 4 C -0.125 4.125 5 C 0.086 3.914 6 C -0.441 4.441 7 H 0.087 0.913 8 C 0.076 3.924 9 N -0.782 5.782 10 Si 0.910 3.090 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.262 1.262 14 C 0.011 3.989 15 C -0.020 4.020 16 C 0.121 3.879 17 N -0.490 5.490 18 C 0.091 3.909 19 C -0.144 4.144 20 C 0.106 3.894 21 N -0.531 5.531 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.064 3.936 26 C 0.017 3.983 27 C -0.066 4.066 28 N -0.447 5.447 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.287 0.713 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.041 0.959 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -11.316 4.135 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.161 4.161 4 C -0.151 4.151 5 C 0.082 3.918 6 C -0.469 4.469 7 H 0.105 0.895 8 C -0.144 4.144 9 N -0.405 5.405 10 Si 0.733 3.267 11 H -0.182 1.182 12 H -0.200 1.200 13 H -0.186 1.186 14 C -0.127 4.127 15 C -0.023 4.023 16 C -0.038 4.038 17 N -0.198 5.198 18 C -0.066 4.066 19 C -0.147 4.147 20 C -0.021 4.021 21 N -0.256 5.256 22 C -0.114 4.114 23 C -0.012 4.012 24 O -0.307 6.307 25 C -0.013 4.013 26 C -0.111 4.111 27 C -0.093 4.093 28 N -0.155 5.155 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.215 -12.187 3.039 12.965 hybrid contribution 0.533 1.644 1.386 2.215 sum -2.682 -10.543 4.425 11.744 Atomic orbital electron populations 1.20282 0.91466 1.00997 1.00415 1.20239 0.94832 0.88477 1.11380 1.21269 0.95437 0.97203 1.02234 1.21403 0.92621 0.98782 1.02293 1.18298 0.94016 0.90794 0.88708 1.19591 0.90994 1.04176 1.32173 0.89483 1.26000 1.01769 0.94095 0.92556 1.69732 1.39168 1.11059 1.20589 0.86293 0.81153 0.79160 0.80054 1.18235 1.20022 1.18595 1.19220 0.88391 0.90739 1.14350 1.19389 0.95178 0.92611 0.95122 1.23212 0.91380 0.93361 0.95847 1.67683 1.30005 1.00809 1.21313 1.22372 0.94413 0.97198 0.92622 1.20406 0.98537 0.94955 1.00790 1.20883 0.95199 0.92625 0.93440 1.62237 1.10394 1.05192 1.47799 1.22877 0.89885 0.98223 1.00377 1.22678 0.99174 0.84615 0.94700 1.87964 1.31162 1.34250 1.77361 1.22630 0.85535 0.93637 0.99466 1.22785 1.00069 0.92237 0.96012 1.21508 0.98252 0.91872 0.97683 1.66796 1.09470 1.29369 1.09901 0.93192 0.92846 0.92583 0.88230 0.85467 0.90142 0.81753 0.84041 0.89840 0.93966 0.94010 0.88467 0.92249 0.88363 0.92303 0.88705 0.89666 0.94079 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.15 36.00 0.37 -0.91 16 2 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 3 C -0.14 -3.10 9.65 -39.84 -0.38 -3.49 16 4 C -0.13 -3.01 8.73 -38.98 -0.34 -3.35 16 5 C 0.09 2.14 5.55 -106.41 -0.59 1.55 16 6 C -0.44 -10.59 6.79 -37.89 -0.26 -10.85 16 7 H 0.09 2.08 6.41 -52.49 -0.34 1.74 16 8 C 0.08 1.74 5.21 -17.32 -0.09 1.65 16 9 N -0.78 -18.37 10.97 55.55 0.61 -17.76 16 10 Si 0.91 17.48 29.58 -169.99 -5.03 12.45 16 11 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 12 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.01 0.27 6.45 -82.24 -0.53 -0.26 16 15 C -0.02 -0.43 5.26 -104.76 -0.55 -0.98 16 16 C 0.12 2.55 9.01 -17.09 -0.15 2.40 16 17 N -0.49 -9.63 10.35 -12.87 -0.13 -9.76 16 18 C 0.09 1.53 10.85 -17.46 -0.19 1.34 16 19 C -0.14 -2.31 4.90 -104.54 -0.51 -2.82 16 20 C 0.11 1.35 5.13 -4.98 -0.03 1.32 16 21 N -0.53 -6.63 4.72 -235.75 -1.11 -7.75 16 22 C 0.01 0.19 5.30 -3.71 -0.02 0.17 16 23 C 0.07 0.79 7.01 37.21 0.26 1.05 16 24 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 25 C 0.06 0.63 7.01 37.21 0.26 0.89 16 26 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16 27 C -0.07 -1.23 7.74 -38.86 -0.30 -1.53 16 28 N -0.45 -10.37 10.07 -5.44 -0.05 -10.43 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.13 3.10 6.34 -52.49 -0.33 2.76 16 34 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 35 H 0.17 3.67 6.77 -52.49 -0.36 3.31 16 36 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 38 H 0.04 0.53 8.07 -51.93 -0.42 0.12 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.49 6.03 -51.93 -0.31 1.17 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.12 2.25 8.04 -52.49 -0.42 1.83 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -26.91 380.36 -10.80 -37.72 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.79 Total: 9.40 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.64 Total: -14.39 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.69 Total: -45.69 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.21 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.91 -10.80 -37.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245248219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.062 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds