Wall clock time and date at job start Tue Mar 31 2020 22:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38871 * 119.25254 * 2 1 4 4 C 1.36879 * 119.80052 * 180.23268 * 3 2 1 5 5 C 1.41118 * 118.39520 * 359.48036 * 4 3 2 6 6 C 1.40894 * 120.72119 * 180.25203 * 5 4 3 7 7 H 1.07999 * 119.99608 * 152.93382 * 6 5 4 8 8 C 1.40071 * 119.99703 * 332.93935 * 6 5 4 9 9 N 1.30769 * 120.00295 * 345.50412 * 8 6 5 10 10 Si 1.86797 * 119.99769 * 165.51240 * 8 6 5 11 11 H 1.48498 * 109.47748 * 59.99608 * 10 8 6 12 12 H 1.48507 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47060 * 299.99503 * 10 8 6 14 14 C 1.41873 * 118.56312 * 0.26865 * 5 4 3 15 15 C 1.47823 * 119.99114 * 180.02562 * 14 5 4 16 16 C 1.39674 * 120.56624 * 316.13474 * 15 14 5 17 17 N 1.31661 * 120.54375 * 179.68159 * 16 15 14 18 18 C 1.31965 * 121.88652 * 0.63508 * 17 16 15 19 19 C 1.38345 * 121.09673 * 359.65366 * 18 17 16 20 20 C 1.50703 * 120.33898 * 180.02562 * 19 18 17 21 21 N 1.46899 * 109.47399 * 269.98067 * 20 19 18 22 22 C 1.47016 * 110.99637 * 293.63133 * 21 20 19 23 23 C 1.53098 * 109.25503 * 177.60449 * 22 21 20 24 24 O 1.43023 * 109.25395 * 56.85443 * 23 22 21 25 25 C 1.43013 * 113.73756 * 301.32388 * 24 23 22 26 26 C 1.47010 * 110.99960 * 170.00193 * 21 20 19 27 27 C 1.38357 * 119.31867 * 0.02562 * 19 18 17 28 28 N 1.31746 * 119.24511 * 179.69636 * 2 1 3 29 29 H 1.08996 * 109.47443 * 270.29909 * 1 2 3 30 30 H 1.09004 * 109.46720 * 30.29564 * 1 2 3 31 31 H 1.08994 * 109.47589 * 150.29477 * 1 2 3 32 32 H 1.08000 * 120.09788 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.80587 * 179.74585 * 4 3 2 34 34 H 0.96998 * 120.00016 * 180.02562 * 9 8 6 35 35 H 1.07996 * 119.73077 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.45030 * 179.67486 * 18 17 16 37 37 H 1.09004 * 109.46989 * 29.97971 * 20 19 18 38 38 H 1.09001 * 109.47009 * 149.97239 * 20 19 18 39 39 H 1.08990 * 109.50901 * 297.54376 * 22 21 20 40 40 H 1.09004 * 109.50081 * 57.67372 * 22 21 20 41 41 H 1.08997 * 109.50844 * 296.91657 * 23 22 21 42 42 H 1.08998 * 109.53855 * 176.80895 * 23 22 21 43 43 H 1.08998 * 109.51010 * 298.74172 * 25 24 23 44 44 H 1.08998 * 109.53968 * 178.62665 * 25 24 23 45 45 H 1.09005 * 109.50500 * 302.32752 * 26 21 20 46 46 H 1.08995 * 109.50954 * 62.41147 * 26 21 20 47 47 H 1.07999 * 120.85438 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2116 0.0000 4 6 3.5543 1.2247 -0.0048 5 6 4.2373 -0.0102 0.0016 6 6 5.6455 -0.0539 0.0023 7 1 6.1592 -0.9010 0.4323 8 6 6.3792 1.0014 -0.5545 9 7 5.7839 1.8801 -1.3185 10 14 8.2080 1.1536 -0.2058 11 1 8.9072 -0.0639 -0.6895 12 1 8.7482 2.3458 -0.9075 13 1 8.4227 1.2997 1.2564 14 6 3.4751 -1.2068 0.0068 15 6 4.1581 -2.5178 0.0142 16 6 5.2561 -2.7514 -0.8169 17 7 5.8679 -3.9171 -0.8055 18 6 5.4687 -4.9063 -0.0286 19 6 4.3857 -4.7567 0.8191 20 6 3.9448 -5.8975 1.6996 21 7 2.9555 -6.7143 0.9841 22 6 1.7153 -5.9587 0.7549 23 6 0.7370 -6.8243 -0.0435 24 8 0.5039 -8.0462 0.6623 25 6 1.6904 -8.8078 0.9021 26 6 2.6784 -7.9622 1.7101 27 6 3.7115 -3.5489 0.8503 28 7 2.1506 -1.1495 0.0061 29 1 -0.3634 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3634 -0.8925 -0.5092 32 1 1.6350 2.1407 0.0004 33 1 4.0985 2.1576 -0.0090 34 1 6.2921 2.6106 -1.7044 35 1 5.6091 -1.9677 -1.4709 36 1 5.9965 -5.8482 -0.0547 37 1 4.8072 -6.5131 1.9557 38 1 3.4979 -5.5011 2.6113 39 1 1.2684 -5.6934 1.7129 40 1 1.9403 -5.0516 0.1939 41 1 1.1617 -7.0449 -1.0228 42 1 -0.2050 -6.2901 -0.1674 43 1 2.1429 -9.0860 -0.0496 44 1 1.4386 -9.7081 1.4626 45 1 3.6064 -8.5177 1.8464 46 1 2.2476 -7.7290 2.6837 47 1 2.8627 -3.4050 1.5023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245248219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:34 Heat of formation + Delta-G solvation = -2.594604 kcal Electronic energy + Delta-G solvation = -29187.380139 eV Core-core repulsion = 25333.499857 eV Total energy + Delta-G solvation = -3853.880282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40194 -40.46874 -39.90732 -37.01807 -36.19376 -34.37113 -33.45927 -32.71579 -32.08454 -31.23417 -29.67237 -28.84041 -26.44175 -25.61569 -25.11040 -24.60375 -23.32271 -22.56258 -21.64574 -21.21684 -19.32211 -17.82037 -17.60122 -17.56650 -17.29998 -16.97786 -16.80197 -16.24742 -15.97822 -15.85588 -15.71930 -15.56512 -15.16557 -14.86068 -14.39577 -14.33459 -14.10660 -13.93548 -13.78370 -13.49058 -13.40178 -13.18746 -13.14480 -13.00734 -12.90639 -12.65073 -12.60032 -12.36460 -12.23554 -12.06268 -11.69962 -11.54170 -11.21063 -10.78406 -10.69795 -10.35675 -10.25473 -9.97537 -9.79670 -9.38397 -9.17348 -8.72789 -6.43048 0.04733 0.35118 0.84180 1.13313 1.35763 1.45507 1.49070 2.14032 2.64003 2.70026 2.92868 3.12902 3.50897 3.60385 3.74296 3.86674 3.96846 3.99803 4.07914 4.10247 4.18653 4.21440 4.30028 4.35007 4.38112 4.54399 4.60403 4.62649 4.64677 4.73850 4.81309 4.83126 4.90241 4.91614 4.95252 4.97519 5.02129 5.02728 5.15160 5.20475 5.29338 5.36888 5.50097 5.75342 5.81992 5.86856 5.95308 5.99561 6.03752 6.17413 6.45002 6.68908 6.74803 7.14784 7.67664 8.17677 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003490 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.368619 B = 8019.962801 C = 9863.821257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.015 4.015 3 C -0.146 4.146 4 C -0.147 4.147 5 C 0.058 3.942 6 C -0.460 4.460 7 H 0.079 0.921 8 C 0.043 3.957 9 N -0.811 5.811 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.263 1.263 13 H -0.260 1.260 14 C 0.000 4.000 15 C -0.046 4.046 16 C 0.107 3.893 17 N -0.503 5.503 18 C 0.096 3.904 19 C -0.128 4.128 20 C 0.110 3.890 21 N -0.538 5.538 22 C 0.019 3.981 23 C 0.069 3.931 24 O -0.403 6.403 25 C 0.059 3.941 26 C 0.018 3.982 27 C -0.063 4.063 28 N -0.462 5.462 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.294 0.706 35 H 0.141 0.859 36 H 0.180 0.820 37 H 0.114 0.886 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.041 0.959 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -13.547 5.215 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.173 4.173 5 C 0.053 3.947 6 C -0.489 4.489 7 H 0.097 0.903 8 C -0.175 4.175 9 N -0.435 5.435 10 Si 0.794 3.206 11 H -0.185 1.185 12 H -0.187 1.187 13 H -0.184 1.184 14 C -0.138 4.138 15 C -0.049 4.049 16 C -0.050 4.050 17 N -0.211 5.211 18 C -0.061 4.061 19 C -0.130 4.130 20 C -0.018 4.018 21 N -0.263 5.263 22 C -0.110 4.110 23 C -0.008 4.008 24 O -0.322 6.322 25 C -0.017 4.017 26 C -0.109 4.109 27 C -0.090 4.090 28 N -0.170 5.170 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.197 0.803 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.059 0.941 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.311 -14.414 4.116 15.352 hybrid contribution 0.445 2.183 1.072 2.472 sum -2.866 -12.231 5.188 13.592 Atomic orbital electron populations 1.20340 0.88020 1.02299 1.01957 1.21060 0.97210 0.88012 1.09482 1.21589 0.94875 0.98717 1.01390 1.21454 0.93739 0.98308 1.03791 1.18620 0.94792 0.91546 0.89698 1.19623 0.91114 1.04790 1.33355 0.90292 1.26684 1.05471 0.93410 0.91897 1.69766 1.40777 1.11692 1.21271 0.85359 0.76247 0.79218 0.79814 1.18512 1.18697 1.18442 1.19612 0.88820 0.91662 1.13728 1.19393 0.95914 0.92710 0.96838 1.22822 0.92029 0.93787 0.96403 1.67667 1.30274 1.00810 1.22376 1.23006 0.94316 0.97541 0.91243 1.20718 0.97250 0.94957 1.00090 1.20931 0.96488 0.91904 0.92449 1.62226 1.09846 1.05775 1.48474 1.22759 0.90676 0.97668 0.99885 1.22632 0.99214 0.84688 0.94289 1.87950 1.32687 1.34246 1.77347 1.22866 0.84779 0.94102 0.99993 1.22891 1.01399 0.91022 0.95585 1.21544 0.98215 0.92222 0.97028 1.66922 1.09316 1.30130 1.10664 0.91411 0.90538 0.92275 0.85416 0.86490 0.89466 0.84169 0.80315 0.86784 0.93696 0.94469 0.91043 0.92542 0.87711 0.92142 0.86172 0.87119 0.94064 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.15 71.23 0.72 -1.52 16 2 C -0.02 -0.67 6.79 42.72 0.29 -0.38 16 3 C -0.15 -6.48 9.65 22.10 0.21 -6.27 16 4 C -0.15 -7.37 8.73 22.66 0.20 -7.17 16 5 C 0.06 3.01 5.55 -21.02 -0.12 2.90 16 6 C -0.46 -23.34 6.79 23.37 0.16 -23.18 16 7 H 0.08 4.00 6.41 -2.91 -0.02 3.98 16 8 C 0.04 2.03 5.21 85.30 0.44 2.48 16 9 N -0.81 -39.57 10.97 21.85 0.24 -39.33 16 10 Si 0.97 36.71 29.58 68.60 2.03 38.74 16 11 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 12 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 13 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 14 C 0.00 -0.02 6.45 42.47 0.27 0.26 16 15 C -0.05 -2.03 5.26 -19.95 -0.10 -2.14 16 16 C 0.11 4.74 9.01 85.07 0.77 5.51 16 17 N -0.50 -19.78 10.35 -194.64 -2.01 -21.79 16 18 C 0.10 3.05 10.85 84.70 0.92 3.97 16 19 C -0.13 -3.90 4.90 -19.81 -0.10 -3.99 16 20 C 0.11 2.46 5.13 85.56 0.44 2.90 16 21 N -0.54 -12.00 4.72 -899.78 -4.24 -16.25 16 22 C 0.02 0.47 5.30 86.31 0.46 0.93 16 23 C 0.07 1.58 7.01 72.01 0.50 2.08 16 24 O -0.40 -9.21 10.83 -148.98 -1.61 -10.82 16 25 C 0.06 0.98 7.01 72.01 0.50 1.49 16 26 C 0.02 0.31 5.64 86.31 0.49 0.79 16 27 C -0.06 -2.36 7.74 22.74 0.18 -2.18 16 28 N -0.46 -21.95 10.07 -171.14 -1.72 -23.67 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.14 8.07 -2.38 -0.02 2.12 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 33 H 0.12 5.98 6.34 -2.91 -0.02 5.97 16 34 H 0.29 12.98 8.29 -92.71 -0.77 12.22 16 35 H 0.14 6.77 6.77 -2.91 -0.02 6.75 16 36 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.11 1.92 7.99 -2.38 -0.02 1.90 16 38 H 0.04 1.02 8.07 -2.39 -0.02 1.00 16 39 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 2.18 6.03 -2.38 -0.01 2.17 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.30 8.09 -2.38 -0.02 1.28 16 46 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.12 4.51 8.04 -2.91 -0.02 4.49 16 Total: -1.00 -61.04 380.36 -0.11 -61.15 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.98 Total: 35.51 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 6.24 Total: -23.54 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -7.74 Total: -101.04 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.61 Total: -10.82 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -61.04 -0.11 -61.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245248219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.553 kcal (2) G-P(sol) polarization free energy of solvation -61.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds