Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38937 * 119.68002 * 2 1 4 4 C 1.36442 * 120.61658 * 179.97438 * 3 2 1 5 5 C 1.40096 * 119.82854 * 359.97438 * 4 3 2 6 6 C 1.41590 * 133.37652 * 179.97438 * 5 4 3 7 7 C 1.35872 * 107.72646 * 180.02562 * 6 5 4 8 8 C 1.47062 * 125.42817 * 180.26572 * 7 6 5 9 9 O 1.21643 * 120.00100 * 359.69345 * 8 7 6 10 10 N 1.34776 * 119.99790 * 179.69522 * 8 7 6 11 11 C 1.47393 * 135.85043 * 359.63237 * 10 8 7 12 12 C 1.52075 * 87.40723 * 154.38491 * 11 10 8 13 13 C 1.47384 * 135.85397 * 179.97438 * 10 8 7 14 14 C 1.53512 * 117.21430 * 267.27663 * 12 11 10 15 15 C 1.54629 * 102.70294 * 262.93145 * 14 12 11 16 16 N 1.47147 * 107.37968 * 339.38485 * 15 14 12 17 17 C 1.36937 * 125.58280 * 179.04535 * 16 15 14 18 18 H 1.08005 * 119.99657 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00078 * 0.02562 * 17 16 15 20 20 N 1.31621 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00353 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47339 * 59.99728 * 21 19 17 23 23 H 1.48502 * 109.47622 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46942 * 300.00266 * 21 19 17 25 25 C 1.47763 * 108.83908 * 359.08643 * 16 15 14 26 26 N 1.38145 * 109.13638 * 0.02562 * 7 6 5 27 27 H 0.97001 * 125.60148 * 179.97438 * 26 7 6 28 28 C 1.37473 * 108.79113 * 0.02562 * 26 7 6 29 29 C 1.37676 * 119.67084 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47029 * 89.99905 * 1 2 3 31 31 H 1.08992 * 109.47372 * 210.00415 * 1 2 3 32 32 H 1.09010 * 109.46467 * 330.00379 * 1 2 3 33 33 H 1.07999 * 119.69077 * 359.95436 * 3 2 1 34 34 H 1.08000 * 120.08109 * 179.97438 * 4 3 2 35 35 H 1.08000 * 126.13491 * 0.07454 * 6 5 4 36 36 H 1.08996 * 113.54091 * 268.99432 * 11 10 8 37 37 H 1.09001 * 113.54510 * 39.67878 * 11 10 8 38 38 H 1.09001 * 113.54543 * 320.32368 * 13 10 8 39 39 H 1.08997 * 113.54770 * 90.92965 * 13 10 8 40 40 H 1.08996 * 110.76160 * 21.23172 * 14 12 11 41 41 H 1.08999 * 110.76548 * 144.62816 * 14 12 11 42 42 H 1.08999 * 109.86773 * 98.83220 * 15 14 12 43 43 H 1.08997 * 109.86524 * 219.93686 * 15 14 12 44 44 H 0.97001 * 120.00275 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.40564 * 263.50874 * 25 16 15 46 46 H 1.08991 * 110.40473 * 141.07682 * 25 16 15 47 47 H 1.07993 * 120.09552 * 0.04800 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2071 0.0000 4 6 3.5592 1.2294 0.0005 5 6 4.2758 0.0256 0.0016 6 6 5.6575 -0.2836 0.0019 7 6 5.7787 -1.6369 0.0025 8 6 7.0482 -2.3791 0.0086 9 8 8.1050 -1.7767 0.0079 10 7 7.0408 -3.7269 0.0148 11 6 6.0083 -4.7787 0.0242 12 6 7.0313 -5.6922 -0.6329 13 6 8.0614 -4.7901 0.0214 14 6 7.0339 -5.7548 -2.1667 15 6 6.1940 -7.0202 -2.4569 16 7 6.2026 -7.8428 -1.2368 17 6 5.5563 -9.0395 -1.0781 18 1 5.6237 -9.5692 -0.1393 19 6 4.8145 -9.5717 -2.1237 20 7 4.7328 -8.9264 -3.2679 21 14 3.9321 -11.2038 -1.9070 22 1 2.9556 -11.0947 -0.7935 23 1 3.2167 -11.5503 -3.1613 24 1 4.9233 -12.2646 -1.5938 25 6 7.0221 -7.1655 -0.2106 26 7 4.5191 -2.2043 0.0021 27 1 4.3282 -3.1553 0.0020 28 6 3.5808 -1.1996 0.0006 29 6 2.1885 -1.1962 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3632 0.8901 0.5138 33 1 1.6447 2.1364 -0.0007 34 1 4.0852 2.1727 0.0001 35 1 6.4695 0.4286 0.0024 36 1 5.7203 -5.0971 1.0260 37 1 5.1517 -4.5537 -0.6111 38 1 8.9188 -4.5745 -0.6162 39 1 8.3497 -5.1108 1.0224 40 1 6.5586 -4.8701 -2.5903 41 1 8.0490 -5.8690 -2.5471 42 1 5.1712 -6.7370 -2.7054 43 1 6.6369 -7.5775 -3.2823 44 1 4.2147 -9.2984 -3.9987 45 1 8.0357 -7.5665 -0.2082 46 1 6.5664 -7.2760 0.7733 47 1 1.6447 -2.1293 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253538458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = 91.968046 kcal Electronic energy + Delta-G solvation = -28836.351022 eV Core-core repulsion = 24986.571284 eV Total energy + Delta-G solvation = -3849.779738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77980 -40.62770 -38.43665 -37.27943 -35.81194 -32.88592 -32.30604 -30.94154 -29.94542 -29.43652 -28.84193 -26.91177 -26.27588 -25.67192 -23.97973 -22.97622 -21.72783 -20.98952 -20.39988 -19.68797 -18.66719 -17.73198 -17.14759 -16.74182 -15.98213 -15.80642 -15.75890 -15.05936 -14.81335 -14.73133 -14.41497 -14.11620 -13.93959 -13.81165 -13.68262 -13.37887 -13.17897 -12.83341 -12.56316 -12.41623 -12.34056 -12.08475 -11.94419 -11.87687 -11.38286 -11.14615 -11.05655 -11.00450 -10.78246 -10.60841 -10.36677 -10.21986 -10.01209 -9.95684 -9.89612 -9.71936 -8.79490 -8.68581 -8.34391 -7.86477 -6.94113 -5.79941 -3.14371 0.62215 1.45862 1.97464 2.62077 2.84101 3.27486 3.34409 3.39323 3.40539 3.70306 4.20744 4.38956 4.47060 4.50664 4.68572 4.79833 4.90617 5.01227 5.06839 5.18253 5.21246 5.27845 5.37126 5.39561 5.40341 5.43901 5.52558 5.54669 5.61195 5.64476 5.69249 5.71962 5.81391 5.92408 6.00708 6.11452 6.31494 6.33366 6.36869 6.39830 6.49673 6.53432 6.53678 6.58745 6.92747 7.23573 7.45602 7.50467 7.58870 7.72678 8.00943 8.15259 9.12201 9.72208 10.37097 11.31403 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.002941 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.992182 B = 9519.310911 C =11493.769847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.058 4.058 5 C -0.124 4.124 6 C -0.112 4.112 7 C 0.026 3.974 8 C 0.609 3.391 9 O -0.530 6.530 10 N -0.642 5.642 11 C 0.110 3.890 12 C -0.101 4.101 13 C 0.123 3.877 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.153 3.847 26 N -0.576 5.576 27 H 0.419 0.581 28 C 0.116 3.884 29 C -0.133 4.133 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.029 0.971 46 H 0.043 0.957 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 17.566 7.236 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.168 4.168 4 C -0.077 4.077 5 C -0.128 4.128 6 C -0.139 4.139 7 C -0.083 4.083 8 C 0.399 3.601 9 O -0.406 6.406 10 N -0.377 5.377 11 C -0.013 4.013 12 C -0.103 4.103 13 C 0.000 4.000 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.026 3.974 26 N -0.183 5.183 27 H 0.261 0.739 28 C 0.005 3.995 29 C -0.154 4.154 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.172 0.828 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.223 17.788 7.087 19.417 hybrid contribution -0.640 -1.423 0.044 1.561 sum -3.863 16.365 7.131 18.264 Atomic orbital electron populations 1.20797 0.90901 1.02820 1.02481 1.19604 0.95831 0.92185 0.98332 1.20505 0.93906 0.97346 1.05030 1.20362 0.93643 0.96169 0.97522 1.18182 0.92966 0.92909 1.08777 1.20860 0.95421 0.92986 1.04584 1.20100 0.83933 0.93154 1.11156 1.16678 0.87173 0.79563 0.76710 1.90832 1.30981 1.67341 1.51488 1.49748 1.12616 1.02989 1.72318 1.23043 0.92985 0.84269 1.00965 1.22165 0.94462 0.95832 0.97849 1.22812 0.93417 0.82683 1.01061 1.22495 1.01336 1.00505 0.91298 1.21232 0.97117 0.86860 0.89330 1.44533 1.57265 1.21753 1.09546 1.18992 1.23389 0.95053 0.98512 0.90412 1.24801 1.00517 0.98961 0.95997 1.69944 1.44808 1.38734 1.03366 0.86203 0.79423 0.83327 0.76798 1.21162 1.21591 1.21127 1.21149 0.95380 0.87509 0.93317 1.42374 1.04073 1.08576 1.63258 0.73912 1.18337 0.90865 0.87741 1.02520 1.19947 0.89771 0.98553 1.07097 0.90989 0.91489 0.91403 0.85960 0.85751 0.82750 0.88939 0.90699 0.89949 0.89361 0.92150 0.91479 0.93557 0.93649 0.93627 0.95297 0.93866 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.06 -0.56 5.88 -104.57 -0.61 -1.18 16 3 C -0.15 -1.39 9.61 -39.97 -0.38 -1.78 16 4 C -0.06 -0.60 10.06 -39.53 -0.40 -1.00 16 5 C -0.12 -1.56 6.16 -106.93 -0.66 -2.22 16 6 C -0.11 -1.49 10.53 -39.15 -0.41 -1.90 16 7 C 0.03 0.37 6.94 -82.29 -0.57 -0.20 16 8 C 0.61 9.55 8.05 -12.68 -0.10 9.44 16 9 O -0.53 -9.70 17.61 5.24 0.09 -9.61 16 10 N -0.64 -9.13 3.70 -187.16 -0.69 -9.82 16 11 C 0.11 1.48 6.59 -7.33 -0.05 1.43 16 12 C -0.10 -1.55 1.06 -155.22 -0.16 -1.71 16 13 C 0.12 1.64 8.02 -7.49 -0.06 1.58 16 14 C -0.12 -2.05 6.40 -25.61 -0.16 -2.21 16 15 C 0.18 4.05 5.39 -2.83 -0.02 4.03 16 16 N -0.60 -14.16 3.41 -170.53 -0.58 -14.75 16 17 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 18 H 0.08 1.96 7.83 -52.48 -0.41 1.54 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -25.95 10.30 55.49 0.57 -25.38 16 21 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.15 2.77 6.70 -3.21 -0.02 2.75 16 26 N -0.58 -7.36 5.99 -7.35 -0.04 -7.40 16 27 H 0.42 4.87 5.75 -40.82 -0.23 4.63 16 28 C 0.12 1.47 7.25 -83.98 -0.61 0.86 16 29 C -0.13 -1.47 9.71 -39.42 -0.38 -1.85 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.07 0.39 8.08 -51.92 -0.42 -0.03 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 37 H 0.07 1.01 6.43 -51.93 -0.33 0.67 16 38 H 0.08 1.11 8.13 -51.93 -0.42 0.68 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 43 H 0.05 1.16 7.49 -51.93 -0.39 0.77 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -31.40 382.43 -11.19 -42.60 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.78 Total: 3.22 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.50 Total: -0.84 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.75 Total: -57.35 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.40 -11.19 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253538458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.566 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds