Wall clock time and date at job start Tue Mar 31 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38937 * 119.68002 * 2 1 4 4 C 1.36442 * 120.61658 * 179.97438 * 3 2 1 5 5 C 1.40096 * 119.82854 * 359.97438 * 4 3 2 6 6 C 1.41590 * 133.37652 * 179.97438 * 5 4 3 7 7 C 1.35872 * 107.72646 * 180.02562 * 6 5 4 8 8 C 1.47062 * 125.42817 * 180.26572 * 7 6 5 9 9 O 1.21643 * 120.00100 * 359.69345 * 8 7 6 10 10 N 1.34776 * 119.99790 * 179.69522 * 8 7 6 11 11 C 1.47393 * 135.85043 * 359.63237 * 10 8 7 12 12 C 1.52075 * 87.40723 * 154.38491 * 11 10 8 13 13 C 1.47384 * 135.85397 * 179.97438 * 10 8 7 14 14 C 1.53512 * 117.21430 * 267.27663 * 12 11 10 15 15 C 1.54629 * 102.70294 * 262.93145 * 14 12 11 16 16 N 1.47147 * 107.37968 * 339.38485 * 15 14 12 17 17 C 1.36937 * 125.58280 * 179.04535 * 16 15 14 18 18 H 1.08005 * 119.99657 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00078 * 0.02562 * 17 16 15 20 20 N 1.31621 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00353 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47339 * 59.99728 * 21 19 17 23 23 H 1.48502 * 109.47622 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46942 * 300.00266 * 21 19 17 25 25 C 1.47763 * 108.83908 * 359.08643 * 16 15 14 26 26 N 1.38145 * 109.13638 * 0.02562 * 7 6 5 27 27 H 0.97001 * 125.60148 * 179.97438 * 26 7 6 28 28 C 1.37473 * 108.79113 * 0.02562 * 26 7 6 29 29 C 1.37676 * 119.67084 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47029 * 89.99905 * 1 2 3 31 31 H 1.08992 * 109.47372 * 210.00415 * 1 2 3 32 32 H 1.09010 * 109.46467 * 330.00379 * 1 2 3 33 33 H 1.07999 * 119.69077 * 359.95436 * 3 2 1 34 34 H 1.08000 * 120.08109 * 179.97438 * 4 3 2 35 35 H 1.08000 * 126.13491 * 0.07454 * 6 5 4 36 36 H 1.08996 * 113.54091 * 268.99432 * 11 10 8 37 37 H 1.09001 * 113.54510 * 39.67878 * 11 10 8 38 38 H 1.09001 * 113.54543 * 320.32368 * 13 10 8 39 39 H 1.08997 * 113.54770 * 90.92965 * 13 10 8 40 40 H 1.08996 * 110.76160 * 21.23172 * 14 12 11 41 41 H 1.08999 * 110.76548 * 144.62816 * 14 12 11 42 42 H 1.08999 * 109.86773 * 98.83220 * 15 14 12 43 43 H 1.08997 * 109.86524 * 219.93686 * 15 14 12 44 44 H 0.97001 * 120.00275 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.40564 * 263.50874 * 25 16 15 46 46 H 1.08991 * 110.40473 * 141.07682 * 25 16 15 47 47 H 1.07993 * 120.09552 * 0.04800 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2071 0.0000 4 6 3.5592 1.2294 0.0005 5 6 4.2758 0.0256 0.0016 6 6 5.6575 -0.2836 0.0019 7 6 5.7787 -1.6369 0.0025 8 6 7.0482 -2.3791 0.0086 9 8 8.1050 -1.7767 0.0079 10 7 7.0408 -3.7269 0.0148 11 6 6.0083 -4.7787 0.0242 12 6 7.0313 -5.6922 -0.6329 13 6 8.0614 -4.7901 0.0214 14 6 7.0339 -5.7548 -2.1667 15 6 6.1940 -7.0202 -2.4569 16 7 6.2026 -7.8428 -1.2368 17 6 5.5563 -9.0395 -1.0781 18 1 5.6237 -9.5692 -0.1393 19 6 4.8145 -9.5717 -2.1237 20 7 4.7328 -8.9264 -3.2679 21 14 3.9321 -11.2038 -1.9070 22 1 2.9556 -11.0947 -0.7935 23 1 3.2167 -11.5503 -3.1613 24 1 4.9233 -12.2646 -1.5938 25 6 7.0221 -7.1655 -0.2106 26 7 4.5191 -2.2043 0.0021 27 1 4.3282 -3.1553 0.0020 28 6 3.5808 -1.1996 0.0006 29 6 2.1885 -1.1962 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3632 0.8901 0.5138 33 1 1.6447 2.1364 -0.0007 34 1 4.0852 2.1727 0.0001 35 1 6.4695 0.4286 0.0024 36 1 5.7203 -5.0971 1.0260 37 1 5.1517 -4.5537 -0.6111 38 1 8.9188 -4.5745 -0.6162 39 1 8.3497 -5.1108 1.0224 40 1 6.5586 -4.8701 -2.5903 41 1 8.0490 -5.8690 -2.5471 42 1 5.1712 -6.7370 -2.7054 43 1 6.6369 -7.5775 -3.2823 44 1 4.2147 -9.2984 -3.9987 45 1 8.0357 -7.5665 -0.2082 46 1 6.5664 -7.2760 0.7733 47 1 1.6447 -2.1293 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253538458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:46 Heat of formation + Delta-G solvation = 74.631997 kcal Electronic energy + Delta-G solvation = -28837.102769 eV Core-core repulsion = 24986.571284 eV Total energy + Delta-G solvation = -3850.531485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.75507 -41.79216 -39.65441 -38.15502 -37.40228 -34.17457 -33.64273 -31.94223 -31.24928 -30.61563 -30.17720 -28.05016 -27.41206 -26.95033 -25.56759 -23.90549 -22.70532 -22.16258 -21.85420 -20.75281 -19.98039 -18.84344 -18.62413 -18.01992 -17.14195 -16.92938 -16.72289 -16.64786 -16.13060 -15.77621 -15.64630 -15.56371 -14.93394 -14.81669 -14.69865 -14.36349 -14.13145 -14.10174 -13.80294 -13.74887 -13.64008 -13.41238 -12.92579 -12.90848 -12.75348 -12.60059 -12.34263 -12.15380 -12.09090 -12.03284 -11.89008 -11.83384 -11.74526 -11.32234 -11.20455 -10.85904 -10.67821 -9.95431 -9.20673 -8.87542 -8.75210 -7.82795 -5.17768 -0.29849 0.63620 0.99775 1.48300 1.50224 1.51586 1.56706 1.88581 2.17795 2.51071 2.87970 3.08896 3.25672 3.40283 3.50110 3.65569 3.74561 3.96292 3.98026 4.11288 4.14086 4.21158 4.25699 4.32449 4.37603 4.45455 4.49420 4.57048 4.61883 4.70517 4.79289 4.83053 4.87425 4.89086 4.93489 4.96963 5.01257 5.10520 5.15689 5.29154 5.48754 5.50317 5.53006 5.64077 5.64191 5.72607 5.77223 6.11567 6.20302 6.32081 6.43333 6.84352 7.11701 7.79316 8.43189 9.27287 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.002941 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.992182 B = 9519.310911 C =11493.769847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.063 4.063 5 C -0.146 4.146 6 C -0.112 4.112 7 C 0.003 3.997 8 C 0.609 3.391 9 O -0.563 6.563 10 N -0.641 5.641 11 C 0.115 3.885 12 C -0.095 4.095 13 C 0.129 3.871 14 C -0.104 4.104 15 C 0.190 3.810 16 N -0.624 5.624 17 C -0.236 4.236 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.952 5.952 21 Si 0.974 3.026 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.279 1.279 25 C 0.152 3.848 26 N -0.575 5.575 27 H 0.422 0.578 28 C 0.102 3.898 29 C -0.153 4.153 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.012 0.988 43 H 0.005 0.995 44 H 0.245 0.755 45 H 0.038 0.962 46 H 0.060 0.940 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 18.827 9.055 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.167 4.167 4 C -0.081 4.081 5 C -0.150 4.150 6 C -0.139 4.139 7 C -0.106 4.106 8 C 0.400 3.600 9 O -0.443 6.443 10 N -0.374 5.374 11 C -0.007 4.007 12 C -0.097 4.097 13 C 0.008 3.992 14 C -0.142 4.142 15 C 0.065 3.935 16 N -0.351 5.351 17 C -0.365 4.365 18 H 0.105 0.895 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.803 3.197 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.205 1.205 25 C 0.027 3.973 26 N -0.182 5.182 27 H 0.263 0.737 28 C -0.008 4.008 29 C -0.174 4.174 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.030 0.970 43 H 0.023 0.977 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.137 19.040 8.947 21.440 hybrid contribution -0.417 -1.750 -0.506 1.869 sum -4.554 17.290 8.441 19.772 Atomic orbital electron populations 1.20871 0.88830 1.03959 1.03293 1.20040 0.97397 0.91841 0.96225 1.20900 0.93714 0.98453 1.03657 1.20696 0.94292 0.96285 0.96848 1.18430 0.92699 0.93919 1.09941 1.21065 0.96184 0.92962 1.03714 1.19959 0.83914 0.93440 1.13281 1.16825 0.87238 0.79762 0.76153 1.90802 1.32167 1.67989 1.53361 1.49702 1.13141 1.02839 1.71726 1.23114 0.92415 0.83221 1.01977 1.21957 0.96802 0.94793 0.96113 1.22878 0.92677 0.81378 1.02312 1.22278 1.00746 0.97810 0.93365 1.20903 0.95756 0.88446 0.88376 1.44801 1.57637 1.21545 1.11094 1.19422 1.22537 0.95956 0.98569 0.89482 1.25596 1.02068 1.02246 0.96013 1.70173 1.45899 1.40116 1.03982 0.85211 0.78380 0.79746 0.76344 1.20106 1.22614 1.20519 1.21318 0.94884 0.88476 0.92665 1.42294 1.03707 1.08737 1.63482 0.73661 1.18671 0.91573 0.87814 1.02758 1.20198 0.89270 0.99731 1.08174 0.90182 0.91060 0.89641 0.83039 0.83618 0.82225 0.86633 0.90899 0.89729 0.86636 0.91626 0.90499 0.96975 0.97712 0.94619 0.94396 0.92155 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.99 71.24 0.71 -0.54 16 2 C -0.05 -0.91 5.88 -19.83 -0.12 -1.03 16 3 C -0.15 -2.37 9.61 22.02 0.21 -2.16 16 4 C -0.06 -1.18 10.06 22.30 0.22 -0.95 16 5 C -0.15 -3.56 6.16 -21.36 -0.13 -3.69 16 6 C -0.11 -2.97 10.53 22.55 0.24 -2.73 16 7 C 0.00 0.10 6.94 39.91 0.28 0.37 16 8 C 0.61 18.81 8.05 86.56 0.70 19.51 16 9 O -0.56 -20.56 17.61 -4.17 -0.07 -20.63 16 10 N -0.64 -17.31 3.70 -864.30 -3.19 -20.50 16 11 C 0.11 2.91 6.59 83.76 0.55 3.46 16 12 C -0.09 -2.75 1.06 -52.62 -0.06 -2.80 16 13 C 0.13 3.16 8.02 83.66 0.67 3.83 16 14 C -0.10 -3.58 6.40 31.32 0.20 -3.38 16 15 C 0.19 8.89 5.39 86.81 0.47 9.36 16 16 N -0.62 -29.33 3.41 -693.44 -2.36 -31.69 16 17 C -0.24 -12.35 10.28 84.03 0.86 -11.49 16 18 H 0.09 4.29 7.83 -2.91 -0.02 4.26 16 19 C -0.07 -3.62 5.49 84.86 0.47 -3.16 16 20 N -0.95 -55.68 10.30 21.65 0.22 -55.45 16 21 Si 0.97 44.11 29.55 68.60 2.03 46.14 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.15 5.22 6.70 86.23 0.58 5.80 16 26 N -0.58 -14.56 5.99 -177.18 -1.06 -15.62 16 27 H 0.42 9.67 5.75 -92.71 -0.53 9.14 16 28 C 0.10 2.54 7.25 39.14 0.28 2.83 16 29 C -0.15 -3.21 9.71 22.38 0.22 -2.99 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.08 0.67 8.08 -2.38 -0.02 0.65 16 33 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 36 H 0.12 2.45 8.06 -2.39 -0.02 2.43 16 37 H 0.07 1.91 6.43 -2.39 -0.02 1.89 16 38 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 39 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 43 H 0.00 0.25 7.49 -2.39 -0.02 0.23 16 44 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 47 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -69.94 382.43 2.37 -67.58 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.46 Total: 19.95 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 6.36 Total: 10.23 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.40 Total: -123.27 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.07 Total: -20.63 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.94 2.37 -67.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253538458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.208 kcal (2) G-P(sol) polarization free energy of solvation -69.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds